Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Forward (+)

35035703 .. 35039939

Gene Structure 4237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTGGTGAGCCAGTGGTTCAGGATCAACGGCAGCGCACTTTGCAGGCATTGGAGCGAAGGTTCGAGGCTGCTCAAGCCGAACTTGATTTACACCAAACGAAGAACACAAAGAGATTGAAAACCGAAGGAGCTGGAAAGAAACCGCATACTGCTAATTCTTCAGCCGTTGATTCTTCACCAAATTTAGCTAGTGCATCATCCGCAACTCCATCGAAGAAAGGGAATTTCACCTTTGCTGGTTATGTGAATTCACAAGATATTGACGAAAGCGGTCCAACATATGCAAAACTCTCTCAGCCTATACATGAGAATCTACTCACAGCTAGTAATGTTGAGGTCTCTGGTAGAAAAGAAAGTAAAGTCGATAATGTATTGCACGAGCTTCTTCAGAGTGGCGACTCTGCTCTGAAGTATATGCAAGGATCAAGAAGCAAGAGGATTGACAATTGGATCCTCCTTGATAATTATGTGCAAGGGCGTGGCGGTTCTGGCTCCCGTGCCAGGGCATTGCAGAGTAATTCAAAGCGGTCTAGGAAGCGTATGTCAATGAAACAGCAAAAGAAGAATGGATTGTTTGATTTGCCTCGGGACCTCCATAGCTATGATAAATTTAAGCCAATGCATGAGATGTGGAAAGGCTATATTGCACAACTTCTTAAAACTACCGGGAAAACGCAGCTGGCTCAGTCTCTTCTTAGTGCAGATCTACATGGTGCTATTATTTCAGTTGTTGACTGTAAAGTAACTTCCTACACTGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTAGCATAATTACAGAAGATGATCAATTCCAAGTGGTGCCAAAAAGGTTTTGTGTTTTTGTATTTCAAGTTGATTGCTGGAAGATTACCTTGCATGGGGACAAACTGACTTCAAGAAACTTGGGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

309

Amino Acids

34.33

Weight (kDa)

9.55

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P-MRP_p29	PF01868	230 - 305	2.5e-21	Ribonuclease P/MRP, subunit p29

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	835
AciI	CCGC	5 cut(s)	146, 204, 273, 486, 529
AclWI	GGATC	4 cut(s)	33, 433, 448, 461
AcsI	RAATTY	4 cut(s)	184, 226, 250, 611
AcuI	CTGAAG	3 cut(s)	147, 374, 431
AfiI	CCNNNNNNNGG	3 cut(s)	504, 505, 894
AgsI	TTSAA	4 cut(s)	121, 525, 866, 912
AjnI	CCWGG	1 cut(s)	503
AleI	CACNNNNGTG	1 cut(s)	761
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	6 cut(s)	134, 191, 326, 385, 603, 682
AluI	AGCT	6 cut(s)	134, 191, 326, 385, 603, 682
Alw26I	GTCTC	2 cut(s)	346, 696
AlwI	GGATC	4 cut(s)	33, 433, 448, 461
Ama87I	CYCGRG	1 cut(s)	588
ApeKI	GCWGC	3 cut(s)	34, 71, 679
ApoI	RAATTY	4 cut(s)	184, 226, 250, 611
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	275, 592
AsuC2I	CCSGG	1 cut(s)	670
AsuHPI	GGTGA	3 cut(s)	20, 171, 223
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	2 cut(s)	275, 592
BamHI	GGATCC	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	835
BarI	GAAGNNNNNNTAC	2 cut(s)	733, 765
BauI	CACGAG	1 cut(s)	380
BbvI	GCAGC	3 cut(s)	46, 58, 691
BccI	CCATC	1 cut(s)	220
BceAI	ACGGC	2 cut(s)	47, 152
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BciT130I	CCWGG	1 cut(s)	505
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	1 cut(s)	670
BcoDI	GTCTC	2 cut(s)	346, 696
BfaI	CTAG	3 cut(s)	192, 327, 534
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	3 cut(s)	35, 72, 680
BlsI	GCNGC	3 cut(s)	36, 73, 681
Bme1390I	CCNGG	2 cut(s)	505, 670
Bme18I	GGWCC	2 cut(s)	275, 592
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	2 cut(s)	275, 592
BmiI	GGNNCC	4 cut(s)	455, 496, 593, 837
BmrFI	CCNGG	2 cut(s)	505, 670
BmsI	GCATC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	670
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	504, 587
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	3 cut(s)	504, 505, 894
Bse1I	ACTGG	2 cut(s)	14, 763
Bse3DI	GCAATG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	504, 587
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	3 cut(s)	504, 505, 894
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	2 cut(s)	311, 701
BseNI	ACTGG	2 cut(s)	14, 763
BseXI	GCAGC	3 cut(s)	46, 58, 691
BsgI	GTGCAG	1 cut(s)	723
BshNI	GGYRCC	1 cut(s)	835
BsiHKCI	CYCGRG	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	669
BslFI	GGGAC	2 cut(s)	605, 911
BslI	CCNNNNNNNGG	3 cut(s)	504, 505, 894
BsmAI	GTCTC	2 cut(s)	346, 696
BsmFI	GGGAC	2 cut(s)	605, 911
Bso31I	GGTCTC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	588
Bsp143I	GATC	5 cut(s)	25, 425, 453, 706, 820
BspACI	CCGC	5 cut(s)	146, 204, 273, 486, 529
BspCNI	CTCAG	2 cut(s)	310, 700
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	4 cut(s)	455, 496, 593, 837
BspPI	GGATC	4 cut(s)	33, 433, 448, 461
BspT107I	GGYRCC	1 cut(s)	835
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	14, 763
BssECI	CCNNGG	2 cut(s)	504, 587
BssMI	GATC	5 cut(s)	25, 425, 453, 706, 820
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	740
Bst6I	CTCTTC	1 cut(s)	699
BstC8I	GCNNGC	2 cut(s)	48, 684
BstDEI	CTNAG	3 cut(s)	297, 687, 698
BstF5I	GGATG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	5 cut(s)	28, 428, 456, 709, 823
BstMAI	GTCTC	2 cut(s)	346, 696
BstMBI	GATC	5 cut(s)	25, 425, 453, 706, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 77, 203, 492
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	2 cut(s)	503, 668
BstV1I	GCAGC	3 cut(s)	46, 58, 691
BstX2I	RGATCY	2 cut(s)	453, 706
BstYI	RGATCY	2 cut(s)	453, 706
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	21, 756
Cac8I	GCNNGC	2 cut(s)	48, 684
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	275, 592
CviAII	CATG	5 cut(s)	308, 626, 713, 775, 893
DdeI	CTNAG	3 cut(s)	297, 687, 698
DpnI	GATC	5 cut(s)	27, 427, 455, 708, 822
DpnII	GATC	5 cut(s)	25, 425, 453, 706, 820
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	275, 592
Eco57I	CTGAAG	3 cut(s)	147, 374, 431
Eco88I	CYCGRG	1 cut(s)	588
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	503
EcoT22I	ATGCAT	1 cut(s)	627
FaeI	CATG	5 cut(s)	311, 629, 716, 778, 896
FalI	AAGNNNNNCTT	4 cut(s)	69, 101, 872, 904
FaqI	GGGAC	2 cut(s)	605, 911
FatI	CATG	5 cut(s)	307, 625, 712, 774, 892
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	3 cut(s)	35, 72, 680
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	35, 72, 680
FspBI	CTAG	3 cut(s)	192, 327, 534
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	3 cut(s)	35, 72, 680
GsuI	CTGGAG	1 cut(s)	780
HapII	CCGG	1 cut(s)	669
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	311, 629, 716, 778, 896
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HinfI	GANTC	4 cut(s)	173, 313, 401, 778
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	3 cut(s)	20, 171, 223
Hpy166II	GTNNAC	1 cut(s)	736
Hpy188I	TCNGA	2 cut(s)	393, 411
Hpy188III	TCNNGA	7 cut(s)	23, 429, 590, 775, 782, 912, 927
Hpy8I	GTNNAC	1 cut(s)	736
HpyAV	CCTTC	2 cut(s)	54, 122
HpyCH4III	ACNGT	1 cut(s)	740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 77, 203, 492
HpyF3I	CTNAG	3 cut(s)	297, 687, 698
Hsp92II	CATG	5 cut(s)	311, 629, 716, 778, 896
HspAI	GCGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	5 cut(s)	25, 425, 453, 706, 820
LmnI	GCTCC	3 cut(s)	55, 131, 500
Lsp1109I	GCAGC	3 cut(s)	46, 58, 691
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	3 cut(s)	192, 327, 534
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	5 cut(s)	27, 427, 455, 708, 822
MboI	GATC	5 cut(s)	25, 425, 453, 706, 820
MboII	GAAGA	9 cut(s)	115, 153, 168, 229, 380, 577, 686, 827, 892
MfeI	CAATTG	1 cut(s)	448
MflI	RGATCY	2 cut(s)	453, 706
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	6 cut(s)	61, 331, 432, 467, 597, 605
Mph1103I	ATGCAT	1 cut(s)	627
MseI	TTAA	2 cut(s)	615, 660
MslI	CAYNNNNRTG	2 cut(s)	603, 761
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	1 cut(s)	669
MspR9I	CCNGG	2 cut(s)	505, 670
MunI	CAATTG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	505
MwoI	GCNNNNNNNGC	4 cut(s)	43, 77, 203, 492
NciI	CCSGG	1 cut(s)	670
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	5 cut(s)	25, 425, 453, 706, 820
NlaIII	CATG	5 cut(s)	311, 629, 716, 778, 896
NlaIV	GGNNCC	4 cut(s)	455, 496, 593, 837
NsiI	ATGCAT	1 cut(s)	627
OliI	CACNNNNGTG	1 cut(s)	761
PagI	TCATGA	1 cut(s)	774
PfeI	GAWTC	3 cut(s)	173, 313, 778
PkrI	GCNGC	3 cut(s)	36, 73, 681
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PpuMI	RGGWCCY	1 cut(s)	592
Psp5II	RGGWCCY	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	4 cut(s)	455, 496, 593, 837
PspPI	GGNCC	2 cut(s)	275, 592
PspPPI	RGGWCCY	1 cut(s)	592
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PsuI	RGATCY	2 cut(s)	453, 706
PvuII	CAGCTG	1 cut(s)	682
RseI	CAYNNNNRTG	2 cut(s)	603, 761
SaqAI	TTAA	2 cut(s)	615, 660
SatI	GCNGC	3 cut(s)	35, 72, 680
Sau3AI	GATC	5 cut(s)	25, 425, 453, 706, 820
Sau96I	GGNCC	2 cut(s)	275, 592
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	505, 670
SfaNI	GCATC	1 cut(s)	206
SinI	GGWCC	2 cut(s)	275, 592
SmiMI	CAYNNNNRTG	2 cut(s)	603, 761
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SsiI	CCGC	5 cut(s)	146, 204, 273, 486, 529
SspMI	CTAG	3 cut(s)	192, 327, 534
StyD4I	CCNGG	2 cut(s)	503, 668
TaaI	ACNGT	1 cut(s)	740
TaqI	TCGA	3 cut(s)	66, 215, 366
TfiI	GAWTC	3 cut(s)	173, 313, 778
Tru1I	TTAA	2 cut(s)	615, 660
Tru9I	TTAA	2 cut(s)	615, 660
TscAI	CASTG	2 cut(s)	21, 763
TseI	GCWGC	3 cut(s)	34, 71, 679
TspDTI	ATGAA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	21, 763
VpaK11BI	GGWCC	2 cut(s)	275, 592
XapI	RAATTY	4 cut(s)	184, 226, 250, 611
XspI	CTAG	3 cut(s)	192, 327, 534
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.