Rh3AG146800

Ribonuclease P protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006825
Physical Location & Seq
Reverse (-)
12968824 .. 12975050
6227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG146800.1

Sequence Viewer

Length: 933 bp
ATGGCTGGTGAGCCAGCGGTTCAGGATCAACGGCAGCGCACTTTGCAGGCATTGGAGCGAAGGTTCGAGGCTGCTCAAGCCGAACTTGATTTACACCAAACGAAGAACACAAAGAGATTGAAAACCGAAGGAGCTGGAAAGAAACCGCATACTGCTAATTCTTCAGCCGTTGATTCTTCACCAAATTTAGCTAATGCATCATCCGCAACTCCATCGAAGAAAGGGAATTTCACCTTTGCTGGTTATGTGAATTCACAAGATATCGACGAAAGCGGTCCAACATATTCAAAACTCTCTCAGCCTATACATGAGAATCTACTCACAGCTAGTAATGTTGAGGTCTCTGGTAGAAAAGAAAGTAAAGTCGATAATGTATTGCATGAGCTTCTTCAGAGTGGCGACTCTGCTCTGAAGTATATGCAAGGATCAAGAAGCAAGAGGATTGACAATTGGATCCTCCTTGATAATTATGTGCAAGGGCGTGGTGGTTCTGGCTCCCGTGCCAGGGCATTGCAGAGTAATTCAAAGCGGTCTAGGAAGCGTATGTCGATGAAACAGCAAAAGAAGAATGGATTGTTTGATTTGCCTCAGGAGCTCCATAGCTATGATAAATTTAAGCCAATGCATGAGATGTGGAAAGACTATATAGCACAACTTCTTAAAACTACTGGGAAAACACAGCTGGCTCAGTCTCTTCTTAGTGCAGATCTACATGGTGCTATTATTTCAGCAGTTGTTGACTGTAAAGTAACTTCCTACACTGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTGGCATAATTACAGAAGATGATCAATTCCGAGTGGTGCCAAAAAGGTTTTCTGTTTTTGTATTTCAAGTTGATTGCTGGAAGATTACCTTGCATGGGGACAAACTGACTTCAAGAAACCTGGGTTCGTGA

Protein Analysis

310

Amino Acids

34.44

Weight (kDa)

9.53

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_P-MRP_p29 PF01868 230 - 306 9.3e-19 Ribonuclease P/MRP, subunit p29
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 838
AciI CCGC 5 cut(s) 17, 146, 204, 273, 529
AclWI GGATC 4 cut(s) 33, 433, 448, 461
AcsI RAATTY 4 cut(s) 184, 226, 250, 611
AcuI CTGAAG 3 cut(s) 147, 374, 431
AfiI CCNNNNNNNGG 3 cut(s) 504, 505, 897
AgsI TTSAA 5 cut(s) 121, 288, 525, 869, 915
AjnI CCWGG 2 cut(s) 503, 921
AjuI GAANNNNNNNTTGG 2 cut(s) 835, 867
AleI CACNNNNGTG 1 cut(s) 764
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 7 cut(s) 134, 191, 326, 385, 595, 603, 682
AluI AGCT 7 cut(s) 134, 191, 326, 385, 595, 603, 682
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 2 cut(s) 346, 696
AlwI GGATC 4 cut(s) 33, 433, 448, 461
ApeKI GCWGC 2 cut(s) 34, 71
ApoI RAATTY 4 cut(s) 184, 226, 250, 611
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 20, 171, 223
AvaII GGWCC 1 cut(s) 275
AxyI CCTNAGG 1 cut(s) 588
BamHI GGATCC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 1 cut(s) 597
BarI GAAGNNNNNNTAC 2 cut(s) 736, 768
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 46, 58
BccI CCATC 1 cut(s) 220
BceAI ACGGC 2 cut(s) 47, 152
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BciT130I CCWGG 2 cut(s) 505, 923
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 2 cut(s) 346, 696
BfaI CTAG 2 cut(s) 327, 534
BglII AGATCT 1 cut(s) 706
BisI GCNGC 2 cut(s) 35, 72
BlsI GCNGC 2 cut(s) 36, 73
Bme1390I CCNGG 2 cut(s) 505, 923
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 455, 496, 840
BmrFI CCNGG 2 cut(s) 505, 923
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 504, 922
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 3 cut(s) 504, 505, 897
Bse1I ACTGG 2 cut(s) 673, 766
Bse21I CCTNAGG 1 cut(s) 588
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 2 cut(s) 505, 923
BseDI CCNNGG 2 cut(s) 504, 922
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 3 cut(s) 504, 505, 897
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 3 cut(s) 311, 602, 701
BseNI ACTGG 2 cut(s) 673, 766
BseXI GCAGC 2 cut(s) 46, 58
BsgI GTGCAG 1 cut(s) 723
BshNI GGYRCC 1 cut(s) 838
BsiHKAI GWGCWC 1 cut(s) 597
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 3 cut(s) 504, 505, 897
BsmAI GTCTC 2 cut(s) 346, 696
BsmFI GGGAC 1 cut(s) 914
Bso31I GGTCTC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 597
Bsp143I GATC 5 cut(s) 25, 425, 453, 706, 823
BspACI CCGC 5 cut(s) 17, 146, 204, 273, 529
BspCNI CTCAG 3 cut(s) 310, 601, 700
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 3 cut(s) 455, 496, 840
BspPI GGATC 4 cut(s) 33, 433, 448, 461
BspT107I GGYRCC 1 cut(s) 838
BspTNI GGTCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 2 cut(s) 673, 766
BssECI CCNNGG 2 cut(s) 504, 922
BssMI GATC 5 cut(s) 25, 425, 453, 706, 823
Bst2UI CCWGG 2 cut(s) 505, 923
Bst4CI ACNGT 1 cut(s) 743
Bst6I CTCTTC 1 cut(s) 699
BstC8I GCNNGC 3 cut(s) 15, 48, 684
BstDEI CTNAG 4 cut(s) 297, 588, 687, 698
BstF5I GGATG 1 cut(s) 200
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 5 cut(s) 28, 428, 456, 709, 826
BstMAI GTCTC 2 cut(s) 346, 696
BstMBI GATC 5 cut(s) 25, 425, 453, 706, 823
BstMWI GCNNNNNNNGC 4 cut(s) 43, 77, 203, 592
BstNI CCWGG 2 cut(s) 505, 923
BstSCI CCNGG 2 cut(s) 503, 921
BstV1I GCAGC 2 cut(s) 46, 58
BstX2I RGATCY 2 cut(s) 453, 706
BstYI RGATCY 2 cut(s) 453, 706
Bsu36I CCTNAGG 1 cut(s) 588
BtsCI GGATG 1 cut(s) 200
BtsIMutI CAGTG 1 cut(s) 759
Cac8I GCNNGC 3 cut(s) 15, 48, 684
CciI TCATGA 1 cut(s) 777
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 275
CviAII CATG 6 cut(s) 308, 380, 626, 713, 778, 896
DdeI CTNAG 4 cut(s) 297, 588, 687, 698
DpnI GATC 5 cut(s) 27, 427, 455, 708, 825
DpnII GATC 5 cut(s) 25, 425, 453, 706, 823
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
Ecl136II GAGCTC 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 597
Eco31I GGTCTC 1 cut(s) 346
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 595
Eco57I CTGAAG 3 cut(s) 147, 374, 431
Eco81I CCTNAGG 1 cut(s) 588
EcoICRI GAGCTC 1 cut(s) 595
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 503, 921
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 2 cut(s) 199, 627
EcoT38I GRGCYC 1 cut(s) 597
FaeI CATG 6 cut(s) 311, 383, 629, 716, 781, 899
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 875, 907
FaqI GGGAC 1 cut(s) 914
FatI CATG 6 cut(s) 307, 379, 625, 712, 777, 895
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 2 cut(s) 35, 72
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 2 cut(s) 35, 72
FspBI CTAG 2 cut(s) 327, 534
GlaI GCGC 1 cut(s) 38
GluI GCNGC 2 cut(s) 35, 72
GsuI CTGGAG 1 cut(s) 783
HhaI GCGC 1 cut(s) 39
Hin1II CATG 6 cut(s) 311, 383, 629, 716, 781, 899
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HinfI GANTC 4 cut(s) 173, 313, 401, 781
HphI GGTGA 3 cut(s) 20, 171, 223
Hpy166II GTNNAC 1 cut(s) 739
Hpy188I TCNGA 3 cut(s) 393, 411, 833
Hpy188III TCNNGA 7 cut(s) 23, 429, 590, 778, 785, 915, 930
Hpy8I GTNNAC 1 cut(s) 739
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 54, 122
HpyCH4III ACNGT 1 cut(s) 743
HpyCH4V TGCA 9 cut(s) 46, 197, 379, 421, 475, 514, 625, 704, 895
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 77, 203, 592
HpyF3I CTNAG 4 cut(s) 297, 588, 687, 698
Hsp92II CATG 6 cut(s) 311, 383, 629, 716, 781, 899
HspAI GCGC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 5 cut(s) 25, 425, 453, 706, 823
LmnI GCTCC 5 cut(s) 55, 131, 500, 592, 600
Lsp1109I GCAGC 2 cut(s) 46, 58
LweI GCATC 1 cut(s) 206
MaeI CTAG 2 cut(s) 327, 534
MaeIII GTNAC 1 cut(s) 748
MalI GATC 5 cut(s) 27, 427, 455, 708, 825
MboI GATC 5 cut(s) 25, 425, 453, 706, 823
MboII GAAGA 9 cut(s) 115, 153, 168, 229, 380, 577, 686, 830, 895
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 2 cut(s) 453, 706
MhlI GDGCHC 1 cut(s) 597
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 302
MnlI CCTC 5 cut(s) 61, 331, 432, 467, 597
Mph1103I ATGCAT 2 cut(s) 199, 627
MseI TTAA 2 cut(s) 615, 660
MslI CAYNNNNRTG 2 cut(s) 603, 764
MspA1I CMGCKG 2 cut(s) 17, 682
MspR9I CCNGG 2 cut(s) 505, 923
MunI CAATTG 1 cut(s) 448
MvaI CCWGG 2 cut(s) 505, 923
MwoI GCNNNNNNNGC 4 cut(s) 43, 77, 203, 592
NdeII GATC 5 cut(s) 25, 425, 453, 706, 823
NlaIII CATG 6 cut(s) 311, 383, 629, 716, 781, 899
NlaIV GGNNCC 3 cut(s) 455, 496, 840
NsiI ATGCAT 2 cut(s) 199, 627
OliI CACNNNNGTG 1 cut(s) 764
PagI TCATGA 1 cut(s) 777
PfeI GAWTC 3 cut(s) 173, 313, 781
PkrI GCNGC 2 cut(s) 36, 73
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 597
Psp6I CCWGG 2 cut(s) 503, 921
PspGI CCWGG 2 cut(s) 503, 921
PspN4I GGNNCC 3 cut(s) 455, 496, 840
PspPI GGNCC 1 cut(s) 275
PsrI GAACNNNNNNTAC 2 cut(s) 75, 107
PsuI RGATCY 2 cut(s) 453, 706
PvuII CAGCTG 1 cut(s) 682
RseI CAYNNNNRTG 2 cut(s) 603, 764
SacI GAGCTC 1 cut(s) 597
SaqAI TTAA 2 cut(s) 615, 660
SatI GCNGC 2 cut(s) 35, 72
Sau3AI GATC 5 cut(s) 25, 425, 453, 706, 823
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 505, 923
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 1 cut(s) 206
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 603, 764
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SsiI CCGC 5 cut(s) 17, 146, 204, 273, 529
SspMI CTAG 2 cut(s) 327, 534
SstI GAGCTC 1 cut(s) 597
StyD4I CCNGG 2 cut(s) 503, 921
TaaI ACNGT 1 cut(s) 743
TaqI TCGA 5 cut(s) 66, 215, 264, 366, 548
TfiI GAWTC 3 cut(s) 173, 313, 781
Tru1I TTAA 2 cut(s) 615, 660
Tru9I TTAA 2 cut(s) 615, 660
TscAI CASTG 1 cut(s) 766
TseI GCWGC 2 cut(s) 34, 71
TspDTI ATGAA 1 cut(s) 566
TspRI CASTG 1 cut(s) 766
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 4 cut(s) 184, 226, 250, 611
XspI CTAG 2 cut(s) 327, 534
Zsp2I ATGCAT 2 cut(s) 199, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.