Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Reverse (-)

14549424 .. 14555650

Gene Structure 6227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG169300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTGGTGAGCCAGCGGTTCAGGATCAACGGCAGCGCACTTTGCAGGCATTGGAGCGAAGGTTCGAGGCTGCTCAAGCCGAACTTGATTTACACCAAACGAAGAACACAAAGAGATTGAAAACCGAAGGAGCTGGAAAGAAACCGCATACTGCTAATTCTTCAGCCGTTGATTCTTCACCAAATTTAGCTAATGCATCATCCGCAACTCCATCGAAGAAAGGGAATTTCACCTTTGCTGGTTATGTGAATTCACAAGATATCGACGAAAGCGGTCCAACATATTCAAAACTCTCTCAGCCTATACATGAGAATCTACTCACAGCTAGTAATGTTGAGGTCTCTGGTAGAAAAGAAAGTAAAGTCGATAATGTATTGCATGAGCTTCTTCAGAGTGGCGACTCTGCTCTGAAGTATATGCAAGGATCAAGAAGCAAGAGGATTGACAATTGGATCCTCCTTGATAATTATGTGCAAGGGCGTGGTGGTTCTGGCTCCCGTGCCAGGGCATTGCAGAGTAATTCAAAGCGGTCTAGGAAGCGTATGTCGATGAAACAGCAAAAGAAGAATGGATTGTTTGATTTGCCTCAGGAGCTCCATAGCTATGATAAATTTAAGCCAATGCATGAGATGTGGAAAGACTATATAGCACAACTTCTTAAAACTACTGGGAAAACACAGCTGGCTCAGTCTCTTCTTAGTGCAGATCTACATGGTGCTATTATTTCAGTTGTTGACTGTAAAGTAACTTCCTACACTGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTGGCATAATTACAGAAGATGATCAATTCCGAGGTAATTCTGCTGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

283

Amino Acids

31.22

Weight (kDa)

9.42

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P-MRP_p29	PF01868	230 - 276	7.9e-12	Ribonuclease P/MRP, subunit p29

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	17, 146, 204, 273, 529
AclWI	GGATC	4 cut(s)	33, 433, 448, 461
AcsI	RAATTY	4 cut(s)	184, 226, 250, 611
AcuI	CTGAAG	3 cut(s)	147, 374, 431
AfiI	CCNNNNNNNGG	2 cut(s)	504, 505
AgsI	TTSAA	3 cut(s)	121, 288, 525
AjnI	CCWGG	1 cut(s)	503
AleI	CACNNNNGTG	1 cut(s)	761
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	7 cut(s)	134, 191, 326, 385, 595, 603, 682
AluI	AGCT	7 cut(s)	134, 191, 326, 385, 595, 603, 682
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	2 cut(s)	346, 696
AlwI	GGATC	4 cut(s)	33, 433, 448, 461
ApeKI	GCWGC	3 cut(s)	34, 71, 842
ApoI	RAATTY	4 cut(s)	184, 226, 250, 611
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	3 cut(s)	20, 171, 223
AvaII	GGWCC	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	588
BamHI	GGATCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	597
BarI	GAAGNNNNNNTAC	2 cut(s)	733, 765
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	46, 58, 829
BccI	CCATC	1 cut(s)	220
BceAI	ACGGC	2 cut(s)	47, 152
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BciT130I	CCWGG	1 cut(s)	505
BclI	TGATCA	1 cut(s)	820
BcoDI	GTCTC	2 cut(s)	346, 696
BfaI	CTAG	2 cut(s)	327, 534
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	3 cut(s)	35, 72, 843
BlsI	GCNGC	3 cut(s)	36, 73, 844
Bme1390I	CCNGG	1 cut(s)	505
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	455, 496
BmrFI	CCNGG	1 cut(s)	505
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	504, 829
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	2 cut(s)	504, 505
Bse1I	ACTGG	2 cut(s)	673, 763
Bse21I	CCTNAGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	504, 829
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	504, 505
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	3 cut(s)	311, 602, 701
BseNI	ACTGG	2 cut(s)	673, 763
BseXI	GCAGC	3 cut(s)	46, 58, 829
BsgI	GTGCAG	1 cut(s)	723
BsiHKAI	GWGCWC	1 cut(s)	597
BslI	CCNNNNNNNGG	2 cut(s)	504, 505
BsmAI	GTCTC	2 cut(s)	346, 696
Bso31I	GGTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	5 cut(s)	25, 425, 453, 706, 820
BspACI	CCGC	5 cut(s)	17, 146, 204, 273, 529
BspCNI	CTCAG	3 cut(s)	310, 601, 700
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	2 cut(s)	455, 496
BspPI	GGATC	4 cut(s)	33, 433, 448, 461
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	673, 763
BssECI	CCNNGG	2 cut(s)	504, 829
BssMI	GATC	5 cut(s)	25, 425, 453, 706, 820
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	740
Bst6I	CTCTTC	1 cut(s)	699
BstC8I	GCNNGC	3 cut(s)	15, 48, 684
BstDEI	CTNAG	4 cut(s)	297, 588, 687, 698
BstF5I	GGATG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	5 cut(s)	28, 428, 456, 709, 823
BstMAI	GTCTC	2 cut(s)	346, 696
BstMBI	GATC	5 cut(s)	25, 425, 453, 706, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 77, 203, 592
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	503
BstV1I	GCAGC	3 cut(s)	46, 58, 829
BstX2I	RGATCY	2 cut(s)	453, 706
BstYI	RGATCY	2 cut(s)	453, 706
Bsu36I	CCTNAGG	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	3 cut(s)	15, 48, 684
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	275
CviAII	CATG	5 cut(s)	308, 380, 626, 713, 775
DdeI	CTNAG	4 cut(s)	297, 588, 687, 698
DpnI	GATC	5 cut(s)	27, 427, 455, 708, 822
DpnII	GATC	5 cut(s)	25, 425, 453, 706, 820
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Ecl136II	GAGCTC	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	346
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	595
Eco57I	CTGAAG	3 cut(s)	147, 374, 431
Eco81I	CCTNAGG	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	595
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	503
EcoRV	GATATC	1 cut(s)	262
EcoT22I	ATGCAT	2 cut(s)	199, 627
EcoT38I	GRGCYC	1 cut(s)	597
FaeI	CATG	5 cut(s)	311, 383, 629, 716, 778
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FatI	CATG	5 cut(s)	307, 379, 625, 712, 774
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	3 cut(s)	35, 72, 843
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	3 cut(s)	35, 72, 843
FspBI	CTAG	2 cut(s)	327, 534
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	3 cut(s)	35, 72, 843
GsuI	CTGGAG	1 cut(s)	780
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	311, 383, 629, 716, 778
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HinfI	GANTC	4 cut(s)	173, 313, 401, 778
HphI	GGTGA	3 cut(s)	20, 171, 223
Hpy166II	GTNNAC	1 cut(s)	736
Hpy188I	TCNGA	3 cut(s)	393, 411, 830
Hpy188III	TCNNGA	5 cut(s)	23, 429, 590, 775, 782
Hpy8I	GTNNAC	1 cut(s)	736
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	54, 122
HpyCH4III	ACNGT	1 cut(s)	740
HpyCH4V	TGCA	8 cut(s)	46, 197, 379, 421, 475, 514, 625, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 77, 203, 592
HpyF3I	CTNAG	4 cut(s)	297, 588, 687, 698
Hsp92II	CATG	5 cut(s)	311, 383, 629, 716, 778
HspAI	GCGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	5 cut(s)	25, 425, 453, 706, 820
LmnI	GCTCC	5 cut(s)	55, 131, 500, 592, 600
Lsp1109I	GCAGC	3 cut(s)	46, 58, 829
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	2 cut(s)	327, 534
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	5 cut(s)	27, 427, 455, 708, 822
MboI	GATC	5 cut(s)	25, 425, 453, 706, 820
MboII	GAAGA	8 cut(s)	115, 153, 168, 229, 380, 577, 686, 827
MfeI	CAATTG	1 cut(s)	448
MflI	RGATCY	2 cut(s)	453, 706
MhlI	GDGCHC	1 cut(s)	597
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	6 cut(s)	61, 331, 432, 467, 597, 824
Mph1103I	ATGCAT	2 cut(s)	199, 627
MseI	TTAA	3 cut(s)	615, 660, 850
MslI	CAYNNNNRTG	2 cut(s)	603, 761
MspA1I	CMGCKG	2 cut(s)	17, 682
MspR9I	CCNGG	1 cut(s)	505
MunI	CAATTG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	505
MwoI	GCNNNNNNNGC	4 cut(s)	43, 77, 203, 592
NdeII	GATC	5 cut(s)	25, 425, 453, 706, 820
NlaIII	CATG	5 cut(s)	311, 383, 629, 716, 778
NlaIV	GGNNCC	2 cut(s)	455, 496
NsiI	ATGCAT	2 cut(s)	199, 627
OliI	CACNNNNGTG	1 cut(s)	761
PagI	TCATGA	1 cut(s)	774
PfeI	GAWTC	3 cut(s)	173, 313, 778
PkrI	GCNGC	3 cut(s)	36, 73, 844
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
Psp124BI	GAGCTC	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	455, 496
PspPI	GGNCC	1 cut(s)	275
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PsuI	RGATCY	2 cut(s)	453, 706
PvuII	CAGCTG	1 cut(s)	682
RseI	CAYNNNNRTG	2 cut(s)	603, 761
SacI	GAGCTC	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	615, 660, 850
SatI	GCNGC	3 cut(s)	35, 72, 843
Sau3AI	GATC	5 cut(s)	25, 425, 453, 706, 820
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	597
SfaNI	GCATC	1 cut(s)	206
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	603, 761
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SsiI	CCGC	5 cut(s)	17, 146, 204, 273, 529
SspMI	CTAG	2 cut(s)	327, 534
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	740
TaqI	TCGA	5 cut(s)	66, 215, 264, 366, 548
TfiI	GAWTC	3 cut(s)	173, 313, 778
Tru1I	TTAA	3 cut(s)	615, 660, 850
Tru9I	TTAA	3 cut(s)	615, 660, 850
TscAI	CASTG	1 cut(s)	763
TseI	GCWGC	3 cut(s)	34, 71, 842
TspDTI	ATGAA	1 cut(s)	566
TspRI	CASTG	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	4 cut(s)	184, 226, 250, 611
XspI	CTAG	2 cut(s)	327, 534
Zsp2I	ATGCAT	2 cut(s)	199, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.