Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Reverse (-)

14732693 .. 14736084

Gene Structure 3392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G230000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTGGTGAGCCAGTCGTTGAAGATCAACAACGGCAACGAACTTTGAAAGCATTGGAGCGAAGGTTCGAGGCTGCCCAAGCTGAACTTGATTTACAAAAAAAGAAGACTGTAAAAAGACCAAAAACCGAGGAAGCTGGAAAGAAATCGCATATCCCAACTTCTTCGGTTGTTGATTCTTCAGCAAAGTCATCCAATGCATCAGCCTCAAGTTCAACGCCATCAAAGAAAGGGGCTTTCACTTTTTCTGGTTATGTTAATTCACAAGATATCGACGAAAGCGGTCCAACGTATGCAAAACTCTCTCAATCTGTACATGAGAATCTGCTGACAACCAATGTTGAGGTCTCTGGTAGAAAGGAGAGTAAAGTTGATAAGGTTTTGCACGAGCTTCTTCAGAGTGGAGACTCGGCTCAGAAGTACATGCAAGGATCCAGAAGCAAGAGAATTGACAATTGGATCCTCCTTGACAATTACGTGCAAGGACGTGGCGTTTTGACTGGCTCTCGTGCCAGGGCGTTGCAGATTCATTCAAAGCGCTCGAAAAAATGCATGTCGATCAAGCAGCTAAAAAAGCATGGATTGTTTGATTTGCCCCAAGATTTCCATTGCTTTGATAAATTTAAGCCAATGCATGAGATGTGGAAAGACTATATTGTGCAACTTCTGAAAACTACTGGGAAGAATCAGCTGGCTCAATGTCTTCTTACTGCAGATCTACATGGTGCTATTATTTCAGTTGCTGAGTGTAAAGTAACTTCCTACACCGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTGGGATAATTACACAGGATGATAAATTCAGAGTGGTGCCCAAAAGGTTTTCTGTTTTTATATTTCAAGTTGATTGCTGGAAGATTACCTTGCACGGGGACAAACTCACTTCAAGAAACTTGAGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

313

Amino Acids

34.96

Weight (kDa)

9.54

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	844
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	4 cut(s)	426, 439, 454, 467
AcsI	RAATTY	2 cut(s)	620, 833
AcuI	CTGAAG	2 cut(s)	165, 380
AfaI	GTAC	2 cut(s)	315, 422
AfeI	AGCGCT	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	903
AgsI	TTSAA	6 cut(s)	23, 49, 216, 534, 875, 921
AjiI	CACGTC	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	512
AjuI	GAANNNNNNNTTGG	2 cut(s)	439, 471
AleI	CACNNNNGTG	1 cut(s)	770
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	5 cut(s)	83, 137, 391, 568, 691
AluI	AGCT	5 cut(s)	83, 137, 391, 568, 691
Alw26I	GTCTC	2 cut(s)	352, 399
AlwI	GGATC	4 cut(s)	426, 439, 454, 467
AlwNI	CAGNNNCTG	1 cut(s)	743
Aor51HI	AGCGCT	1 cut(s)	539
ApeKI	GCWGC	2 cut(s)	74, 565
ApoI	RAATTY	2 cut(s)	620, 833
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	849
BamHI	GGATCC	2 cut(s)	431, 459
BanI	GGYRCC	1 cut(s)	844
BarI	GAAGNNNNNNTAC	2 cut(s)	742, 774
BauI	CACGAG	2 cut(s)	386, 507
BbsI	GAAGAC	2 cut(s)	113, 695
BbvI	GCAGC	2 cut(s)	61, 577
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	352, 399
BfmI	CTRYAG	1 cut(s)	711
BfoI	RGCGCY	1 cut(s)	541
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	2 cut(s)	75, 566
BlsI	GCNGC	2 cut(s)	76, 567
Bme1390I	CCNGG	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	3 cut(s)	433, 461, 846
BmrFI	CCNGG	1 cut(s)	514
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	687
BpiI	GAAGAC	2 cut(s)	113, 695
BpuEI	CTTGAG	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	129, 513
BsaWI	WCCGGW	1 cut(s)	767
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	903
Bse1I	ACTGG	3 cut(s)	14, 505, 682
Bse3DI	GCAATG	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	129, 513
BseGI	GGATG	2 cut(s)	191, 832
BseLI	CCNNNNNNNGG	1 cut(s)	903
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	2 cut(s)	428, 735
BseNI	ACTGG	3 cut(s)	14, 505, 682
BseSI	GKGCMC	1 cut(s)	849
BseXI	GCAGC	2 cut(s)	61, 577
BshNI	GGYRCC	1 cut(s)	844
BsiSI	CCGG	1 cut(s)	768
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	1 cut(s)	903
BsmAI	GTCTC	2 cut(s)	352, 399
BsmFI	GGGAC	1 cut(s)	920
Bso31I	GGTCTC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	849
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	5 cut(s)	25, 431, 459, 558, 715
BspACI	CCGC	1 cut(s)	282
BspCNI	CTCAG	2 cut(s)	427, 736
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	3 cut(s)	433, 461, 846
BspMAI	CTGCAG	1 cut(s)	715
BspPI	GGATC	4 cut(s)	426, 439, 454, 467
BspT107I	GGYRCC	1 cut(s)	844
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	607
BsrGI	TGTACA	1 cut(s)	313
BsrI	ACTGG	3 cut(s)	14, 505, 682
BssECI	CCNNGG	2 cut(s)	129, 513
BssMI	GATC	5 cut(s)	25, 431, 459, 558, 715
BssSI	CACGAG	2 cut(s)	386, 507
Bst2BI	CACGAG	2 cut(s)	386, 507
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	2 cut(s)	414, 744
BstF5I	GGATG	2 cut(s)	191, 832
BstH2I	RGCGCY	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	5 cut(s)	28, 434, 462, 561, 718
BstMAI	GTCTC	2 cut(s)	352, 399
BstMBI	GATC	5 cut(s)	25, 431, 459, 558, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 574
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	2 cut(s)	427, 556
BstSCI	CCNGG	1 cut(s)	512
BstSFI	CTRYAG	1 cut(s)	711
BstSLI	GKGCMC	1 cut(s)	849
BstV1I	GCAGC	2 cut(s)	61, 577
BstV2I	GAAGAC	2 cut(s)	113, 695
BstX2I	RGATCY	3 cut(s)	431, 459, 715
BstYI	RGATCY	3 cut(s)	431, 459, 715
BtrI	CACGTC	1 cut(s)	488
BtsCI	GGATG	2 cut(s)	191, 832
Cac8I	GCNNGC	1 cut(s)	693
CaiI	CAGNNNCTG	1 cut(s)	743
CciI	TCATGA	1 cut(s)	783
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	314, 421
CviAII	CATG	7 cut(s)	317, 424, 553, 578, 635, 722, 784
CviQI	GTAC	2 cut(s)	314, 421
DdeI	CTNAG	2 cut(s)	414, 744
DpnI	GATC	5 cut(s)	27, 433, 461, 560, 717
DpnII	GATC	5 cut(s)	25, 431, 459, 558, 715
Eco31I	GGTCTC	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	284
Eco47III	AGCGCT	1 cut(s)	539
Eco57I	CTGAAG	2 cut(s)	165, 380
EcoRII	CCWGG	1 cut(s)	512
EcoRV	GATATC	1 cut(s)	271
EcoT22I	ATGCAT	3 cut(s)	202, 554, 636
FaeI	CATG	7 cut(s)	320, 427, 556, 581, 638, 725, 787
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 881, 913
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	7 cut(s)	316, 423, 552, 577, 634, 721, 783
Fnu4HI	GCNGC	2 cut(s)	75, 566
FokI	GGATG	2 cut(s)	178, 839
Fsp4HI	GCNGC	2 cut(s)	75, 566
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	2 cut(s)	75, 566
HaeII	RGCGCY	1 cut(s)	541
HapII	CCGG	1 cut(s)	768
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	7 cut(s)	320, 427, 556, 581, 638, 725, 787
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HinfI	GANTC	6 cut(s)	176, 322, 407, 526, 685, 787
HpaII	CCGG	1 cut(s)	768
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	4 cut(s)	399, 417, 669, 839
Hpy188III	TCNNGA	4 cut(s)	435, 784, 791, 921
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	3 cut(s)	290, 477, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 574
HpyF3I	CTNAG	2 cut(s)	414, 744
HpySE526I	ACGT	3 cut(s)	290, 477, 487
Hsp92II	CATG	7 cut(s)	320, 427, 556, 581, 638, 725, 787
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	25, 431, 459, 558, 715
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	2 cut(s)	61, 577
LweI	GCATC	1 cut(s)	209
MaeII	ACGT	3 cut(s)	290, 477, 487
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	5 cut(s)	27, 433, 461, 560, 717
MboI	GATC	5 cut(s)	25, 431, 459, 558, 715
MboII	GAAGA	8 cut(s)	35, 118, 156, 171, 386, 694, 695, 901
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	3 cut(s)	431, 459, 715
MhlI	GDGCHC	1 cut(s)	849
MluCI	AATT	7 cut(s)	259, 447, 454, 472, 620, 816, 833
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	5 cut(s)	64, 124, 217, 337, 473
Mph1103I	ATGCAT	3 cut(s)	202, 554, 636
MseI	TTAA	2 cut(s)	258, 624
MslI	CAYNNNNRTG	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	691
MspI	CCGG	1 cut(s)	768
MspR9I	CCNGG	1 cut(s)	514
MunI	CAATTG	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	2 cut(s)	80, 574
NdeII	GATC	5 cut(s)	25, 431, 459, 558, 715
NlaIII	CATG	7 cut(s)	320, 427, 556, 581, 638, 725, 787
NlaIV	GGNNCC	3 cut(s)	433, 461, 846
NmeAIII	GCCGAG	1 cut(s)	389
NsiI	ATGCAT	3 cut(s)	202, 554, 636
NspI	RCATGY	2 cut(s)	427, 556
OliI	CACNNNNGTG	1 cut(s)	770
PagI	TCATGA	1 cut(s)	783
PfeI	GAWTC	5 cut(s)	176, 322, 526, 685, 787
PkrI	GCNGC	2 cut(s)	76, 567
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Ppu21I	YACGTR	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	3 cut(s)	433, 461, 846
PspPI	GGNCC	1 cut(s)	284
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PstI	CTGCAG	1 cut(s)	715
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	3 cut(s)	431, 459, 715
PvuII	CAGCTG	1 cut(s)	691
RsaI	GTAC	2 cut(s)	315, 422
RsaNI	GTAC	2 cut(s)	314, 421
RseI	CAYNNNNRTG	1 cut(s)	770
SaqAI	TTAA	2 cut(s)	258, 624
SatI	GCNGC	2 cut(s)	75, 566
Sau3AI	GATC	5 cut(s)	25, 431, 459, 558, 715
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	849
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	1 cut(s)	711
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	770
SmlI	CTYRAG	2 cut(s)	208, 928
SmoI	CTYRAG	2 cut(s)	208, 928
Sse9I	AATT	7 cut(s)	259, 447, 454, 472, 620, 816, 833
SsiI	CCGC	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	3 cut(s)	293, 480, 490
TaqI	TCGA	4 cut(s)	69, 273, 542, 557
TasI	AATT	7 cut(s)	259, 447, 454, 472, 620, 816, 833
TatI	WGTACW	2 cut(s)	313, 420
TfiI	GAWTC	5 cut(s)	176, 322, 526, 685, 787
Tru1I	TTAA	2 cut(s)	258, 624
Tru9I	TTAA	2 cut(s)	258, 624
TseI	GCWGC	2 cut(s)	74, 565
TspDTI	ATGAA	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	2 cut(s)	620, 833
XceI	RCATGY	2 cut(s)	427, 556
Zsp2I	ATGCAT	3 cut(s)	202, 554, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.