Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Reverse (-)

9576597 .. 9580264

Gene Structure 3668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15400.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTAGTGAGCCGGTGGTTCAGGATCAACGGCAGCGCACTTTGCAGGCATTAGAGCGAAGGTTCGAAGCTGCCAAAGCCGAACTTGATTTACACCAGACCAAGAACACAAAGCGATTGAAAACCGAAGGAGCTGCAAAGAAACCGCATACCGCAATTTCTTCAGCCGTTGATTCTTCACCGAAGTTAGCTAATGTATCGACCGCAACTCCATCCAAGAAAGGAAATTTCACCTTTGCTGGTTATGTGAATTCTCAAGATATCGACGAAAGTGGTCCAACATATTCAAAGCTTTCTCAGCCTATACATGAGAATCTACTCAAAGCTAGTAATGTTGAGGCCTCTGGTAGAAAAGAAAGTAAAGTCGATAATGTCTTGCACGAGCTTCTTCAGAGTGGTGACTCTGCGCAGAAGTATATGCAAGGATCAAGAAGCAAGAGGATCGACAATTGGATGCTCCTTGATAATTATGTGCAAGGACGTGGAGGTTTTGGGGCCCGTGCCAGGGCGTCGCGGAGTAATTCAAAGCGGTCTAGGAAGCGTATGTCGATGAAACAGCAAAAGAAGAATGGATTGTTTGATTTTCCGCAAGAGCTCCATAGCTATGTTAAATTTAAGCCAATGCATGAGATGTGGAAAGGCTATATTTCACAACTTCTCAAAACCACTGGGAAAACACAGCTGGCTCAATCTCTTCTTGTTGCAGATCTACATGGTGCTATTATTTCAGTTGTTGACTGTAAAGTAACTTCCTACACTGGAGTGAGTGGTGTCATGATTCGTGAAACAGCAGAAACATTTGGCATAATTACGGAAGATGATAAATTCCGAGTGGTGCCAAAAAGATTTTCTGTTTTTATATTTCAAGCTGATTGCTGGAAGATTACCTTGCATGGGGACAAACTGGCTTCAAGAAACTTGGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

310

Amino Acids

34.5

Weight (kDa)

9.84

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P-MRP_p29	PF01868	230 - 305	2.2e-19	Ribonuclease P/MRP, subunit p29

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	835
AccII	CGCG	1 cut(s)	514
AciI	CCGC	6 cut(s)	146, 153, 204, 514, 529, 587
AclWI	GGATC	3 cut(s)	33, 433, 449
AcsI	RAATTY	4 cut(s)	226, 250, 611, 824
AcuI	CTGAAG	2 cut(s)	147, 374
AcyI	GRCGYC	1 cut(s)	509
AfiI	CCNNNNNNNGG	3 cut(s)	504, 505, 894
AgsI	TTSAA	5 cut(s)	121, 288, 525, 866, 912
AjiI	CACGTC	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	503
AjuI	GAANNNNNNNTTGG	2 cut(s)	832, 864
AleI	CACNNNNGTG	1 cut(s)	761
Alw21I	GWGCWC	1 cut(s)	597
AlwI	GGATC	3 cut(s)	33, 433, 449
AoxI	GGCC	2 cut(s)	339, 495
ApaI	GGGCCC	1 cut(s)	499
ApeKI	GCWGC	3 cut(s)	34, 71, 134
ApoI	RAATTY	4 cut(s)	226, 250, 611, 824
AspLEI	GCGC	2 cut(s)	39, 409
AspS9I	GGNCC	3 cut(s)	275, 495, 496
AsuHPI	GGTGA	3 cut(s)	171, 223, 410
AsuII	TTCGAA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	835
BanII	GRGCYC	2 cut(s)	499, 597
BarI	GAAGNNNNNNTAC	2 cut(s)	733, 765
BauI	CACGAG	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	46, 58, 121
BccI	CCATC	1 cut(s)	220
BceAI	ACGGC	2 cut(s)	47, 152
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 424, 458
BciT130I	CCWGG	1 cut(s)	505
BfaI	CTAG	3 cut(s)	6, 327, 534
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	3 cut(s)	35, 72, 135
BlsI	GCNGC	3 cut(s)	36, 73, 136
Bme1390I	CCNGG	1 cut(s)	505
Bme18I	GGWCC	1 cut(s)	275
BmgBI	CACGTC	1 cut(s)	482
BmgT120I	GGNCC	3 cut(s)	275, 495, 496
BmiI	GGNNCC	3 cut(s)	496, 497, 837
BmrFI	CCNGG	1 cut(s)	505
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	1 cut(s)	444
BmuI	ACTGGG	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	3 cut(s)	504, 505, 894
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	3 cut(s)	673, 763, 909
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	212, 459
BseLI	CCNNNNNNNGG	3 cut(s)	504, 505, 894
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	3 cut(s)	673, 763, 909
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	3 cut(s)	46, 58, 121
Bsh1236I	CGCG	1 cut(s)	514
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	341, 497
BshNI	GGYRCC	1 cut(s)	835
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	597
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	911
BslI	CCNNNNNNNGG	3 cut(s)	504, 505, 894
BsmFI	GGGAC	1 cut(s)	911
BsnI	GGCC	2 cut(s)	341, 497
Bsp119I	TTCGAA	1 cut(s)	66
Bsp120I	GGGCCC	1 cut(s)	495
Bsp1286I	GDGCHC	2 cut(s)	499, 597
Bsp143I	GATC	4 cut(s)	25, 425, 441, 706
BspACI	CCGC	6 cut(s)	146, 153, 204, 514, 529, 587
BspANI	GGCC	2 cut(s)	341, 497
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	514
BspHI	TCATGA	2 cut(s)	774, 926
BspLI	GGNNCC	3 cut(s)	496, 497, 837
BspPI	GGATC	3 cut(s)	33, 433, 449
BspT104I	TTCGAA	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	835
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	3 cut(s)	673, 763, 909
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	4 cut(s)	25, 425, 441, 706
BssNI	GRCGYC	1 cut(s)	509
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	740
Bst6I	CTCTTC	1 cut(s)	699
BstACI	GRCGYC	1 cut(s)	509
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	48, 684
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	212, 459
BstFNI	CGCG	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	39, 409
BstKTI	GATC	4 cut(s)	28, 428, 444, 709
BstMBI	GATC	4 cut(s)	25, 425, 441, 706
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 77, 298
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	499
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	3 cut(s)	46, 58, 121
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	2 cut(s)	341, 497
BtrI	CACGTC	1 cut(s)	482
BtsCI	GGATG	2 cut(s)	212, 459
BtsIMutI	CAGTG	2 cut(s)	666, 756
Cac8I	GCNNGC	2 cut(s)	48, 684
CciI	TCATGA	2 cut(s)	774, 926
CfoI	GCGC	2 cut(s)	39, 409
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	275, 495, 496
CseI	GACGC	1 cut(s)	498
CviAII	CATG	6 cut(s)	308, 626, 713, 775, 893, 927
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	4 cut(s)	27, 427, 443, 708
DpnII	GATC	4 cut(s)	25, 425, 441, 706
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Ecl136II	GAGCTC	1 cut(s)	595
Eco147I	AGGCCT	1 cut(s)	341
Eco24I	GRGCYC	2 cut(s)	499, 597
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	595
Eco57I	CTGAAG	2 cut(s)	147, 374
EcoICRI	GAGCTC	1 cut(s)	595
EcoO109I	RGGNCCY	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	503
EcoRV	GATATC	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	627
EcoT38I	GRGCYC	2 cut(s)	499, 597
FaeI	CATG	6 cut(s)	311, 629, 716, 778, 896, 930
FalI	AAGNNNNNCTT	4 cut(s)	69, 101, 872, 904
FaqI	GGGAC	1 cut(s)	911
FatI	CATG	6 cut(s)	307, 625, 712, 774, 892, 926
Fnu4HI	GCNGC	3 cut(s)	35, 72, 135
FokI	GGATG	2 cut(s)	199, 466
FriOI	GRGCYC	2 cut(s)	499, 597
Fsp4HI	GCNGC	3 cut(s)	35, 72, 135
FspBI	CTAG	3 cut(s)	6, 327, 534
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	2 cut(s)	38, 408
GluI	GCNGC	3 cut(s)	35, 72, 135
GsuI	CTGGAG	1 cut(s)	780
HaeIII	GGCC	2 cut(s)	341, 497
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	498
HhaI	GCGC	2 cut(s)	39, 409
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	6 cut(s)	311, 629, 716, 778, 896, 930
Hin6I	GCGC	2 cut(s)	37, 407
HinP1I	GCGC	2 cut(s)	37, 407
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	4 cut(s)	173, 313, 401, 778
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	3 cut(s)	171, 223, 410
Hpy166II	GTNNAC	1 cut(s)	736
Hpy188I	TCNGA	2 cut(s)	393, 830
Hpy188III	TCNNGA	7 cut(s)	23, 257, 429, 775, 782, 912, 927
Hpy8I	GTNNAC	1 cut(s)	736
Hpy99I	CGWCG	2 cut(s)	269, 514
HpyAV	CCTTC	2 cut(s)	54, 122
HpyCH4III	ACNGT	1 cut(s)	740
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	8 cut(s)	46, 137, 379, 421, 475, 625, 704, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 77, 298
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	481
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	6 cut(s)	311, 629, 716, 778, 896, 930
HspAI	GCGC	2 cut(s)	37, 407
Kzo9I	GATC	4 cut(s)	25, 425, 441, 706
LmnI	GCTCC	3 cut(s)	131, 462, 600
Lsp1109I	GCAGC	3 cut(s)	46, 58, 121
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	3 cut(s)	6, 327, 534
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	2 cut(s)	398, 745
MalI	GATC	4 cut(s)	27, 427, 443, 708
MboI	GATC	4 cut(s)	25, 425, 441, 706
MboII	GAAGA	7 cut(s)	153, 168, 380, 577, 686, 827, 892
MfeI	CAATTG	1 cut(s)	448
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	2 cut(s)	499, 597
MluCI	AATT	9 cut(s)	156, 226, 250, 448, 466, 520, 611, 807, 824
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	4 cut(s)	331, 352, 432, 479
Mph1103I	ATGCAT	1 cut(s)	627
MseI	TTAA	2 cut(s)	609, 615
MslI	CAYNNNNRTG	2 cut(s)	603, 761
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	505
MunI	CAATTG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	43, 77, 298
NdeII	GATC	4 cut(s)	25, 425, 441, 706
NlaIII	CATG	6 cut(s)	311, 629, 716, 778, 896, 930
NlaIV	GGNNCC	3 cut(s)	496, 497, 837
NmuCI	GTSAC	1 cut(s)	398
NsbI	TGCGCA	1 cut(s)	408
NsiI	ATGCAT	1 cut(s)	627
NspV	TTCGAA	1 cut(s)	66
OliI	CACNNNNGTG	1 cut(s)	761
PagI	TCATGA	2 cut(s)	774, 926
PceI	AGGCCT	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	173, 313, 778
PkrI	GCNGC	3 cut(s)	36, 73, 136
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
Psp124BI	GAGCTC	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	3 cut(s)	496, 497, 837
PspOMI	GGGCCC	1 cut(s)	495
PspPI	GGNCC	3 cut(s)	275, 495, 496
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PsuI	RGATCY	1 cut(s)	706
PvuII	CAGCTG	1 cut(s)	682
RseI	CAYNNNNRTG	2 cut(s)	603, 761
SacI	GAGCTC	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	609, 615
SatI	GCNGC	3 cut(s)	35, 72, 135
Sau3AI	GATC	4 cut(s)	25, 425, 441, 706
Sau96I	GGNCC	3 cut(s)	275, 495, 496
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	2 cut(s)	499, 597
SfaNI	GCATC	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	66
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	603, 761
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	9 cut(s)	156, 226, 250, 448, 466, 520, 611, 807, 824
SseBI	AGGCCT	1 cut(s)	341
SsiI	CCGC	6 cut(s)	146, 153, 204, 514, 529, 587
SspMI	CTAG	3 cut(s)	6, 327, 534
SstI	GAGCTC	1 cut(s)	597
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	740
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	6 cut(s)	66, 200, 264, 366, 444, 548
TasI	AATT	9 cut(s)	156, 226, 250, 448, 466, 520, 611, 807, 824
TfiI	GAWTC	3 cut(s)	173, 313, 778
Tru1I	TTAA	2 cut(s)	609, 615
Tru9I	TTAA	2 cut(s)	609, 615
TscAI	CASTG	2 cut(s)	673, 763
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	3 cut(s)	34, 71, 134
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	2 cut(s)	566, 915
TspGWI	ACGGA	1 cut(s)	827
TspRI	CASTG	2 cut(s)	673, 763
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	4 cut(s)	226, 250, 611, 824
XspI	CTAG	3 cut(s)	6, 327, 534
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.