RchiOBHm_Chr3g0468881

Ribonuclease P protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006825
Physical Location & Seq
Reverse (-)
14749111 .. 14753004
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43474

Sequence Viewer

Length: 930 bp
ATGGCTGGTGAGCCAGCGGTTCAGGATCAACGGCAGCGCACTTTGCAGGCATTGGAGCGAAGGTTCGAGGCTGCTCAAGCCGAACTTGATTTACACCAAACGAAGAACACAAAGAGATTGAAAACCGAAGGAGCTGGAAAGAAACCGCATACTGCTAATTCTTCAGCCGTTGATTCTTCACCAAATTTAGCTAATGCATCATCCGCAACTCCATCGAAGAAAGGGAATTTCACCTTTGCTGGTTATGTGAATTCACAAGATATCGACGAAAGCGGTCCAACATATTCAAAACTCTCTCAGCCTATACATGAGAATCTACTCACAGCTAGTAATGTTGAGGTCTCTGGTAGAAAAGAAAGTAAAGTCGATAATGTATTGCATGAGCTTCTTCAGAGTGGCGACTCTGCTCTGAAGTATATGCAAGGATCAAGAAGCAAGAGGATTGACAATTGGATCCTCCTTGATAATTATGTGCAAGGGCGTGGTGGTTCTGGCTCCCGTGCCAGGGCATTGCAGAGTAATTCAAAGCGGTCTAGGAAGCGTATGTCGATGAAACAGCAAAAGAAGAATGGATTGTTTGATTTGCCTCAGGAGCTCCATAGCTATGATAAATTTAAGCCAATGCATGAGATGTGGAAAGACTATATAGCACAACTTCTTAAAACTACTGGGAAAACACAGCTGGCTCAGTCTCTTCTTAGTGCAGATCTACATGGTGCTATTATTTCAGTTGTTGACTGTAAAGTAACTTCCTACACTGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTGGCATAATTACAGAAGATGATCAATTCCGAGTGGTGCCAAAAAGGTTTTCTGTTTTTGTATTTCAAGTTGATTGCTGGAAGATTACCTTGCATGGGGACAAACTGACTTCAAGAAACCTGGGTTCGTGA

Protein Analysis

309

Amino Acids

34.37

Weight (kDa)

9.53

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_P-MRP_p29 PF01868 230 - 305 5.5e-21 Ribonuclease P/MRP, subunit p29
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 835
AciI CCGC 5 cut(s) 17, 146, 204, 273, 529
AclWI GGATC 4 cut(s) 33, 433, 448, 461
AcsI RAATTY 4 cut(s) 184, 226, 250, 611
AcuI CTGAAG 3 cut(s) 147, 374, 431
AfiI CCNNNNNNNGG 3 cut(s) 504, 505, 894
AgsI TTSAA 5 cut(s) 121, 288, 525, 866, 912
AjnI CCWGG 2 cut(s) 503, 918
AjuI GAANNNNNNNTTGG 2 cut(s) 832, 864
AleI CACNNNNGTG 1 cut(s) 761
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 7 cut(s) 134, 191, 326, 385, 595, 603, 682
AluI AGCT 7 cut(s) 134, 191, 326, 385, 595, 603, 682
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 2 cut(s) 346, 696
AlwI GGATC 4 cut(s) 33, 433, 448, 461
ApeKI GCWGC 2 cut(s) 34, 71
ApoI RAATTY 4 cut(s) 184, 226, 250, 611
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 20, 171, 223
AvaII GGWCC 1 cut(s) 275
AxyI CCTNAGG 1 cut(s) 588
BamHI GGATCC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 1 cut(s) 597
BarI GAAGNNNNNNTAC 2 cut(s) 733, 765
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 46, 58
BccI CCATC 1 cut(s) 220
BceAI ACGGC 2 cut(s) 47, 152
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BciT130I CCWGG 2 cut(s) 505, 920
BclI TGATCA 1 cut(s) 820
BcoDI GTCTC 2 cut(s) 346, 696
BfaI CTAG 2 cut(s) 327, 534
BglII AGATCT 1 cut(s) 706
BisI GCNGC 2 cut(s) 35, 72
BlsI GCNGC 2 cut(s) 36, 73
Bme1390I CCNGG 2 cut(s) 505, 920
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 455, 496, 837
BmrFI CCNGG 2 cut(s) 505, 920
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 780
BpuEI CTTGAG 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 504, 919
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 3 cut(s) 504, 505, 894
Bse1I ACTGG 2 cut(s) 673, 763
Bse21I CCTNAGG 1 cut(s) 588
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 2 cut(s) 505, 920
BseDI CCNNGG 2 cut(s) 504, 919
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 3 cut(s) 504, 505, 894
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 3 cut(s) 311, 602, 701
BseNI ACTGG 2 cut(s) 673, 763
BseXI GCAGC 2 cut(s) 46, 58
BsgI GTGCAG 1 cut(s) 723
BshNI GGYRCC 1 cut(s) 835
BsiHKAI GWGCWC 1 cut(s) 597
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 3 cut(s) 504, 505, 894
BsmAI GTCTC 2 cut(s) 346, 696
BsmFI GGGAC 1 cut(s) 911
Bso31I GGTCTC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 597
Bsp143I GATC 5 cut(s) 25, 425, 453, 706, 820
BspACI CCGC 5 cut(s) 17, 146, 204, 273, 529
BspCNI CTCAG 3 cut(s) 310, 601, 700
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 3 cut(s) 455, 496, 837
BspPI GGATC 4 cut(s) 33, 433, 448, 461
BspT107I GGYRCC 1 cut(s) 835
BspTNI GGTCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 2 cut(s) 673, 763
BssECI CCNNGG 2 cut(s) 504, 919
BssMI GATC 5 cut(s) 25, 425, 453, 706, 820
Bst2UI CCWGG 2 cut(s) 505, 920
Bst4CI ACNGT 1 cut(s) 740
Bst6I CTCTTC 1 cut(s) 699
BstC8I GCNNGC 3 cut(s) 15, 48, 684
BstDEI CTNAG 4 cut(s) 297, 588, 687, 698
BstF5I GGATG 1 cut(s) 200
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 5 cut(s) 28, 428, 456, 709, 823
BstMAI GTCTC 2 cut(s) 346, 696
BstMBI GATC 5 cut(s) 25, 425, 453, 706, 820
BstMWI GCNNNNNNNGC 4 cut(s) 43, 77, 203, 592
BstNI CCWGG 2 cut(s) 505, 920
BstSCI CCNGG 2 cut(s) 503, 918
BstV1I GCAGC 2 cut(s) 46, 58
BstX2I RGATCY 2 cut(s) 453, 706
BstYI RGATCY 2 cut(s) 453, 706
Bsu36I CCTNAGG 1 cut(s) 588
BtsCI GGATG 1 cut(s) 200
BtsIMutI CAGTG 1 cut(s) 756
Cac8I GCNNGC 3 cut(s) 15, 48, 684
CciI TCATGA 1 cut(s) 774
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 275
CviAII CATG 6 cut(s) 308, 380, 626, 713, 775, 893
DdeI CTNAG 4 cut(s) 297, 588, 687, 698
DpnI GATC 5 cut(s) 27, 427, 455, 708, 822
DpnII GATC 5 cut(s) 25, 425, 453, 706, 820
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
Ecl136II GAGCTC 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 597
Eco31I GGTCTC 1 cut(s) 346
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 595
Eco57I CTGAAG 3 cut(s) 147, 374, 431
Eco81I CCTNAGG 1 cut(s) 588
EcoICRI GAGCTC 1 cut(s) 595
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 503, 918
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 2 cut(s) 199, 627
EcoT38I GRGCYC 1 cut(s) 597
FaeI CATG 6 cut(s) 311, 383, 629, 716, 778, 896
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 872, 904
FaqI GGGAC 1 cut(s) 911
FatI CATG 6 cut(s) 307, 379, 625, 712, 774, 892
FbaI TGATCA 1 cut(s) 820
Fnu4HI GCNGC 2 cut(s) 35, 72
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 2 cut(s) 35, 72
FspBI CTAG 2 cut(s) 327, 534
GlaI GCGC 1 cut(s) 38
GluI GCNGC 2 cut(s) 35, 72
GsuI CTGGAG 1 cut(s) 780
HhaI GCGC 1 cut(s) 39
Hin1II CATG 6 cut(s) 311, 383, 629, 716, 778, 896
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HinfI GANTC 4 cut(s) 173, 313, 401, 778
HphI GGTGA 3 cut(s) 20, 171, 223
Hpy166II GTNNAC 1 cut(s) 736
Hpy188I TCNGA 3 cut(s) 393, 411, 830
Hpy188III TCNNGA 7 cut(s) 23, 429, 590, 775, 782, 912, 927
Hpy8I GTNNAC 1 cut(s) 736
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 54, 122
HpyCH4III ACNGT 1 cut(s) 740
HpyCH4V TGCA 9 cut(s) 46, 197, 379, 421, 475, 514, 625, 704, 892
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 77, 203, 592
HpyF3I CTNAG 4 cut(s) 297, 588, 687, 698
Hsp92II CATG 6 cut(s) 311, 383, 629, 716, 778, 896
HspAI GCGC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 5 cut(s) 25, 425, 453, 706, 820
LmnI GCTCC 5 cut(s) 55, 131, 500, 592, 600
Lsp1109I GCAGC 2 cut(s) 46, 58
LweI GCATC 1 cut(s) 206
MaeI CTAG 2 cut(s) 327, 534
MaeIII GTNAC 1 cut(s) 745
MalI GATC 5 cut(s) 27, 427, 455, 708, 822
MboI GATC 5 cut(s) 25, 425, 453, 706, 820
MboII GAAGA 9 cut(s) 115, 153, 168, 229, 380, 577, 686, 827, 892
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 2 cut(s) 453, 706
MhlI GDGCHC 1 cut(s) 597
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 302
MnlI CCTC 5 cut(s) 61, 331, 432, 467, 597
Mph1103I ATGCAT 2 cut(s) 199, 627
MseI TTAA 2 cut(s) 615, 660
MslI CAYNNNNRTG 2 cut(s) 603, 761
MspA1I CMGCKG 2 cut(s) 17, 682
MspR9I CCNGG 2 cut(s) 505, 920
MunI CAATTG 1 cut(s) 448
MvaI CCWGG 2 cut(s) 505, 920
MwoI GCNNNNNNNGC 4 cut(s) 43, 77, 203, 592
NdeII GATC 5 cut(s) 25, 425, 453, 706, 820
NlaIII CATG 6 cut(s) 311, 383, 629, 716, 778, 896
NlaIV GGNNCC 3 cut(s) 455, 496, 837
NsiI ATGCAT 2 cut(s) 199, 627
OliI CACNNNNGTG 1 cut(s) 761
PagI TCATGA 1 cut(s) 774
PfeI GAWTC 3 cut(s) 173, 313, 778
PkrI GCNGC 2 cut(s) 36, 73
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 597
Psp6I CCWGG 2 cut(s) 503, 918
PspGI CCWGG 2 cut(s) 503, 918
PspN4I GGNNCC 3 cut(s) 455, 496, 837
PspPI GGNCC 1 cut(s) 275
PsrI GAACNNNNNNTAC 2 cut(s) 75, 107
PsuI RGATCY 2 cut(s) 453, 706
PvuII CAGCTG 1 cut(s) 682
RseI CAYNNNNRTG 2 cut(s) 603, 761
SacI GAGCTC 1 cut(s) 597
SaqAI TTAA 2 cut(s) 615, 660
SatI GCNGC 2 cut(s) 35, 72
Sau3AI GATC 5 cut(s) 25, 425, 453, 706, 820
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 505, 920
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 1 cut(s) 206
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 603, 761
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SsiI CCGC 5 cut(s) 17, 146, 204, 273, 529
SspMI CTAG 2 cut(s) 327, 534
SstI GAGCTC 1 cut(s) 597
StyD4I CCNGG 2 cut(s) 503, 918
TaaI ACNGT 1 cut(s) 740
TaqI TCGA 5 cut(s) 66, 215, 264, 366, 548
TfiI GAWTC 3 cut(s) 173, 313, 778
Tru1I TTAA 2 cut(s) 615, 660
Tru9I TTAA 2 cut(s) 615, 660
TscAI CASTG 1 cut(s) 763
TseI GCWGC 2 cut(s) 34, 71
TspDTI ATGAA 1 cut(s) 566
TspRI CASTG 1 cut(s) 763
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 4 cut(s) 184, 226, 250, 611
XspI CTAG 2 cut(s) 327, 534
Zsp2I ATGCAT 2 cut(s) 199, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.