Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Forward (+)

7589937 .. 7593090

Gene Structure 3154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0097000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCAAGCCCTCCAGCATCATCCACTCGCCGGAGACCACATTCTCCGGCCCAAAAGCGGCCGGACGCCTCTCAAGCCTGTGAACTCTCCAGCAACTCCGGTCAATATTGTTACAAAGGCAAAGCCACCAGCACAAGAATGTATCAGCATCTCTCTGTTGGGCCCCTCGAACAAGGAGAACGGGCCGGTTTATGCGGCTCAGATGATCGAAACTGCGGCCATGGACGCTTCTTTGGCGGAGGAGCTGAGTGCGATGAGGAAGAAGCTGGAGAGGATAAGACTGGATAGAGAGAGAACAGAGAAGATGCTCGAGGAAAGGGATGCAATGCTGGATTTGCAGATGAAGGAGATAGAAAACAGAGGTCAAATCCAGAAGATGGTTGAGATTGATGTTGATAGGGTGTTCAGATTGAATCAGCTCCATTCTCAATCCATTAGATTTTCTCCGATTCGGTCTCTGAGAGAAAAGGAGCAGCAAAAGAAGGCCGCTGGATCACCAGCAGTTAAGATAGTGAATTTTGAAGAGATGGAGGAATCAGTAGGTGAAAACACACCACAGAAGCTGAGTTCTGCTTCAATTGATTCCGAAAGTGTTACAGCAAGGGATACTGTGATTACCAAATCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

209

Amino Acids

23.35

Weight (kDa)

7.85

Isoelectric Point (pI)

57.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	376
AciI	CCGC	5 cut(s)	57, 194, 215, 236, 486
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	2 cut(s)	58, 216
AcsI	RAATTY	1 cut(s)	514
AcyI	GRCGYC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	29, 56, 376
AgsI	TTSAA	3 cut(s)	412, 521, 576
AluBI	AGCT	4 cut(s)	244, 265, 418, 562
AluI	AGCT	4 cut(s)	244, 265, 418, 562
Alw26I	GTCTC	2 cut(s)	27, 459
AlwI	GGATC	1 cut(s)	499
AlwNI	CAGNNNCTG	1 cut(s)	562
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	6 cut(s)	47, 58, 160, 182, 216, 483
ApaI	GGGCCC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	1 cut(s)	514
AspS9I	GGNCC	4 cut(s)	48, 160, 161, 182
AsuHPI	GGTGA	2 cut(s)	486, 554
AvaI	CYCGRG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	370, 520
BciVI	GTATCC	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	27, 459
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	5 cut(s)	58, 195, 216, 473, 486
BlsI	GCNGC	5 cut(s)	59, 196, 217, 474, 487
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	4 cut(s)	48, 160, 161, 182
BmiI	GGNNCC	2 cut(s)	162, 163
BmsI	GCATC	4 cut(s)	25, 156, 294, 310
BpmI	CTGGAG	2 cut(s)	72, 287
BpuEI	CTTGAG	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	2 cut(s)	27, 459
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 56, 376
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	19, 325
BseLI	CCNNNNNNNGG	3 cut(s)	29, 56, 376
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	4 cut(s)	212, 236, 449, 554
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	164
BseX3I	CGGCCG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	484
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	6 cut(s)	49, 60, 162, 184, 218, 485
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	5 cut(s)	30, 46, 61, 98, 185
BslI	CCNNNNNNNGG	3 cut(s)	29, 56, 376
BsmAI	GTCTC	2 cut(s)	27, 459
BsnI	GGCC	6 cut(s)	49, 60, 162, 184, 218, 485
Bso31I	GGTCTC	2 cut(s)	27, 459
BsoBI	CYCGRG	1 cut(s)	308
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	204, 491
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	5 cut(s)	57, 194, 215, 236, 486
BspANI	GGCC	6 cut(s)	49, 60, 162, 184, 218, 485
BspCNI	CTCAG	4 cut(s)	211, 237, 450, 555
BspLI	GGNNCC	2 cut(s)	162, 163
BspPI	GGATC	1 cut(s)	499
BspTNI	GGTCTC	2 cut(s)	27, 459
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	204, 491
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	1 cut(s)	516
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	198, 245, 458, 563
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	19, 325
BstKTI	GATC	2 cut(s)	207, 494
BstMAI	GTCTC	2 cut(s)	27, 459
BstMBI	GATC	2 cut(s)	204, 491
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 224, 233, 334
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	484
BstZI	CGGCCG	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	6 cut(s)	49, 60, 162, 184, 218, 485
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	19, 325
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	4 cut(s)	48, 160, 161, 182
CseI	GACGC	2 cut(s)	73, 233
CviAII	CATG	1 cut(s)	220
DdeI	CTNAG	4 cut(s)	198, 245, 458, 563
DpnI	GATC	2 cut(s)	206, 493
DpnII	GATC	2 cut(s)	204, 491
EaeI	YGGCCR	2 cut(s)	58, 216
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
EciI	GGCGGA	1 cut(s)	251
EclXI	CGGCCG	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	164
Eco31I	GGTCTC	2 cut(s)	27, 459
Eco52I	CGGCCG	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	223
FaiI	YATR	2 cut(s)	192, 221
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	5 cut(s)	58, 195, 216, 473, 486
FokI	GGATG	2 cut(s)	6, 332
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	5 cut(s)	58, 195, 216, 473, 486
GluI	GCNGC	5 cut(s)	58, 195, 216, 473, 486
GsuI	CTGGAG	2 cut(s)	72, 287
HaeIII	GGCC	6 cut(s)	49, 60, 162, 184, 218, 485
HapII	CCGG	5 cut(s)	30, 46, 61, 98, 185
HgaI	GACGC	2 cut(s)	73, 233
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	4 cut(s)	412, 448, 533, 581
HpaII	CCGG	5 cut(s)	30, 46, 61, 98, 185
HphI	GGTGA	2 cut(s)	486, 554
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	5 cut(s)	201, 407, 447, 459, 586
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	337, 475
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4V	TGCA	3 cut(s)	4, 323, 337
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 224, 233, 334
HpyF3I	CTNAG	4 cut(s)	198, 245, 458, 563
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	204, 491
LmnI	GCTCC	3 cut(s)	241, 423, 469
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	4 cut(s)	25, 156, 294, 310
MaeIII	GTNAC	2 cut(s)	109, 592
MalI	GATC	2 cut(s)	206, 493
MboI	GATC	2 cut(s)	204, 491
MboII	GAAGA	4 cut(s)	271, 313, 385, 533
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	2 cut(s)	514, 576
MnlI	CCTC	9 cut(s)	20, 78, 175, 232, 249, 264, 304, 353, 523
MseI	TTAA	2 cut(s)	504, 628
MslI	CAYNNNNRTG	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	5 cut(s)	30, 46, 61, 98, 185
MunI	CAATTG	1 cut(s)	576
MwoI	GCNNNNNNNGC	4 cut(s)	73, 224, 233, 334
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	2 cut(s)	204, 491
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	162, 163
PaeR7I	CTCGAG	1 cut(s)	308
PfeI	GAWTC	4 cut(s)	412, 448, 533, 581
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	5 cut(s)	59, 196, 217, 474, 487
PspN4I	GGNNCC	2 cut(s)	162, 163
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	4 cut(s)	48, 160, 161, 182
PspXI	VCTCGAGB	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	562
RseI	CAYNNNNRTG	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	504, 628
SatI	GCNGC	5 cut(s)	58, 195, 216, 473, 486
Sau3AI	GATC	2 cut(s)	204, 491
Sau96I	GGNCC	4 cut(s)	48, 160, 161, 182
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	6 cut(s)	246, 267, 364, 420, 544, 564
SfaNI	GCATC	4 cut(s)	25, 156, 294, 310
Sfr274I	CTCGAG	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	136
SmlI	CTYRAG	2 cut(s)	71, 308
SmoI	CTYRAG	2 cut(s)	71, 308
Sse9I	AATT	2 cut(s)	514, 576
SsiI	CCGC	5 cut(s)	57, 194, 215, 236, 486
SspI	AATATT	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	610
TaqI	TCGA	3 cut(s)	167, 207, 309
TaqII	GACCGA	1 cut(s)	441
TasI	AATT	2 cut(s)	514, 576
TauI	GCSGC	4 cut(s)	60, 197, 218, 488
TfiI	GAWTC	4 cut(s)	412, 448, 533, 581
Tru1I	TTAA	2 cut(s)	504, 628
Tru9I	TTAA	2 cut(s)	504, 628
TseI	GCWGC	1 cut(s)	472
TspDTI	ATGAA	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	514
XhoI	CTCGAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.