Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Reverse (-)

13602441 .. 13605369

Gene Structure 2929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAGCTACCAGGATATGCAATCACTGCTGCCATGGCTGGTGAGCCAGTGGTTCAGGATCAACGGCAGCGCACTTTGCAGGCATTGGAGCGAAGGTTCGAGGCTGCTCAAGCCGAACTTGATTTACACCAAACGAAGAACACAAAGAGATTGAAAACCGAAGCAGCTGGAAAGAAACCGCATACTGCTAATTCTTCAGCCGTTGATGCTTCACCAAATTTAGCTAATGCATCATCCGCAACTCCATTGAAGAAAGGGAATTTCACCTTTGCTGGTTATGTGAATTCACAAGATATCGACGAAAGCGGTCCAACATATTCAAAACTCTCTCAGCCTATACATGAGAATCTACTCACAGCTAGTAATGTTGAGGTCTCTGGTAGAAAAGAAAGTAAAGTCGATAATGTATTGCACGAGCTTCTTCAGAGTGGCGACTCTGCTCTGAAGTATATGCAAGGATCAAGAAGCAAGAGGATTGACAATTGGATCCTCCTTGATAATTATGTGCAAGGGCGTGGTGGTTCTGTCTCCCGTGCCAGGGCATTGAAGAGTAATTCAAAGCGGTCTAGGAAGCGTATGTCGATGAAACAGCAAAAGAAGAATGGATTGTTTGATTTGCCTCAGGAGCTCCATAGCTATGATAAATTTAAGCCAATGCATGAGATGTGGAAAGACTATATAGCACAACTTCTTAAAACTACTGGGAAAACGCAGCTGGCTCAGTCTCTTCTTAGTGCAGATCTACATGGTGCTATTATTTCAGTTGTTGACTGTAAAGTAACTTCCTACACTGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTGGCATAATTACAGAAGATGATCAATTCCGAGTGGTGCCAAAAAGGTTTTCTGTTTTTGTATTTCAAGTTGATTGCTGGAAGATTACCTTGCATGGGGACAAACTGACTTCAAGAAACCTGGGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

320

Amino Acids

35.58

Weight (kDa)

9.6

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P-MRP_p29	PF01868	241 - 316	5.9e-21	Ribonuclease P/MRP, subunit p29

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	868
AciI	CCGC	4 cut(s)	179, 237, 306, 562
AclWI	GGATC	4 cut(s)	66, 466, 481, 494
AcsI	RAATTY	4 cut(s)	217, 259, 283, 644
AcuI	CTGAAG	3 cut(s)	180, 407, 464
AfiI	CCNNNNNNNGG	3 cut(s)	537, 538, 927
AgsI	TTSAA	7 cut(s)	154, 250, 321, 547, 558, 899, 945
AjnI	CCWGG	3 cut(s)	10, 536, 951
AjuI	GAANNNNNNNTTGG	2 cut(s)	865, 897
AleI	CACNNNNGTG	1 cut(s)	794
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	8 cut(s)	7, 167, 224, 359, 418, 628, 636, 715
AluI	AGCT	8 cut(s)	7, 167, 224, 359, 418, 628, 636, 715
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	3 cut(s)	379, 532, 729
AlwI	GGATC	4 cut(s)	66, 466, 481, 494
ApeKI	GCWGC	5 cut(s)	29, 67, 104, 164, 712
ApoI	RAATTY	4 cut(s)	217, 259, 283, 644
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	3 cut(s)	53, 204, 256
AvaII	GGWCC	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	621
BamHI	GGATCC	1 cut(s)	486
BanI	GGYRCC	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	630
BarI	GAAGNNNNNNTAC	2 cut(s)	766, 798
BauI	CACGAG	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	630
BbvI	GCAGC	5 cut(s)	16, 79, 91, 176, 724
BceAI	ACGGC	2 cut(s)	80, 185
BciT130I	CCWGG	3 cut(s)	12, 538, 953
BclI	TGATCA	1 cut(s)	853
BcoDI	GTCTC	3 cut(s)	379, 532, 729
BfaI	CTAG	2 cut(s)	360, 567
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	5 cut(s)	30, 68, 105, 165, 713
BlsI	GCNGC	5 cut(s)	31, 69, 106, 166, 714
Bme1390I	CCNGG	3 cut(s)	12, 538, 953
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	2 cut(s)	488, 870
BmrFI	CCNGG	3 cut(s)	12, 538, 953
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	2 cut(s)	196, 239
BmuI	ACTGGG	1 cut(s)	711
BpmI	CTGGAG	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	33, 537, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	537, 538, 927
Bse1I	ACTGG	3 cut(s)	47, 706, 796
Bse21I	CCTNAGG	1 cut(s)	621
BseBI	CCWGG	3 cut(s)	12, 538, 953
BseDI	CCNNGG	3 cut(s)	33, 537, 952
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	3 cut(s)	537, 538, 927
BseMII	CTCAG	3 cut(s)	344, 635, 734
BseNI	ACTGG	3 cut(s)	47, 706, 796
BseXI	GCAGC	5 cut(s)	16, 79, 91, 176, 724
BsgI	GTGCAG	1 cut(s)	756
BshNI	GGYRCC	1 cut(s)	868
BsiHKAI	GWGCWC	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	944
BslI	CCNNNNNNNGG	3 cut(s)	537, 538, 927
BsmAI	GTCTC	3 cut(s)	379, 532, 729
BsmFI	GGGAC	1 cut(s)	944
Bso31I	GGTCTC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp143I	GATC	5 cut(s)	58, 458, 486, 739, 853
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	4 cut(s)	179, 237, 306, 562
BspCNI	CTCAG	3 cut(s)	343, 634, 733
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	2 cut(s)	488, 870
BspPI	GGATC	4 cut(s)	66, 466, 481, 494
BspT107I	GGYRCC	1 cut(s)	868
BspTNI	GGTCTC	1 cut(s)	379
BsrI	ACTGG	3 cut(s)	47, 706, 796
BssECI	CCNNGG	3 cut(s)	33, 537, 952
BssMI	GATC	5 cut(s)	58, 458, 486, 739, 853
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	3 cut(s)	12, 538, 953
Bst4CI	ACNGT	1 cut(s)	773
Bst6I	CTCTTC	2 cut(s)	542, 732
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	81, 717
BstDEI	CTNAG	4 cut(s)	330, 621, 720, 731
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	5 cut(s)	61, 461, 489, 742, 856
BstMAI	GTCTC	3 cut(s)	379, 532, 729
BstMBI	GATC	5 cut(s)	58, 458, 486, 739, 853
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 35, 76, 110, 206, 236, 625
BstNI	CCWGG	3 cut(s)	12, 538, 953
BstSCI	CCNGG	3 cut(s)	10, 536, 951
BstV1I	GCAGC	5 cut(s)	16, 79, 91, 176, 724
BstX2I	RGATCY	2 cut(s)	486, 739
BstYI	RGATCY	2 cut(s)	486, 739
Bsu36I	CCTNAGG	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	3 cut(s)	24, 54, 789
Cac8I	GCNNGC	2 cut(s)	81, 717
CciI	TCATGA	1 cut(s)	807
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	308
CviAII	CATG	6 cut(s)	34, 341, 659, 746, 808, 926
DdeI	CTNAG	4 cut(s)	330, 621, 720, 731
DpnI	GATC	5 cut(s)	60, 460, 488, 741, 855
DpnII	GATC	5 cut(s)	58, 458, 486, 739, 853
Eam1104I	CTCTTC	2 cut(s)	542, 732
EarI	CTCTTC	2 cut(s)	542, 732
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	630
Eco31I	GGTCTC	1 cut(s)	379
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	628
Eco57I	CTGAAG	3 cut(s)	180, 407, 464
Eco81I	CCTNAGG	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	3 cut(s)	10, 536, 951
EcoRV	GATATC	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	2 cut(s)	232, 660
EcoT38I	GRGCYC	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	6 cut(s)	37, 344, 662, 749, 811, 929
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 905, 937
FaqI	GGGAC	1 cut(s)	944
FatI	CATG	6 cut(s)	33, 340, 658, 745, 807, 925
FbaI	TGATCA	1 cut(s)	853
Fnu4HI	GCNGC	5 cut(s)	30, 68, 105, 165, 713
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	630
Fsp4HI	GCNGC	5 cut(s)	30, 68, 105, 165, 713
FspBI	CTAG	2 cut(s)	360, 567
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	5 cut(s)	30, 68, 105, 165, 713
GsuI	CTGGAG	1 cut(s)	813
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	6 cut(s)	37, 344, 662, 749, 811, 929
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	3 cut(s)	346, 434, 811
HphI	GGTGA	3 cut(s)	53, 204, 256
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	3 cut(s)	426, 444, 863
Hpy188III	TCNNGA	7 cut(s)	56, 462, 623, 808, 815, 945, 960
Hpy8I	GTNNAC	1 cut(s)	769
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	773
HpyCH4V	TGCA	9 cut(s)	20, 79, 230, 412, 454, 508, 658, 737, 925
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 35, 76, 110, 206, 236, 625
HpyF3I	CTNAG	4 cut(s)	330, 621, 720, 731
Hsp92II	CATG	6 cut(s)	37, 344, 662, 749, 811, 929
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	5 cut(s)	58, 458, 486, 739, 853
LmnI	GCTCC	3 cut(s)	88, 625, 633
Lsp1109I	GCAGC	5 cut(s)	16, 79, 91, 176, 724
LweI	GCATC	2 cut(s)	196, 239
MaeI	CTAG	2 cut(s)	360, 567
MaeIII	GTNAC	1 cut(s)	778
MalI	GATC	5 cut(s)	60, 460, 488, 741, 855
MboI	GATC	5 cut(s)	58, 458, 486, 739, 853
MboII	GAAGA	9 cut(s)	148, 186, 262, 413, 559, 610, 719, 860, 925
MfeI	CAATTG	1 cut(s)	481
MflI	RGATCY	2 cut(s)	486, 739
MhlI	GDGCHC	1 cut(s)	630
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	5 cut(s)	94, 364, 465, 500, 630
Mph1103I	ATGCAT	2 cut(s)	232, 660
MseI	TTAA	2 cut(s)	648, 693
MslI	CAYNNNNRTG	2 cut(s)	636, 794
MspA1I	CMGCKG	2 cut(s)	167, 715
MspR9I	CCNGG	3 cut(s)	12, 538, 953
MunI	CAATTG	1 cut(s)	481
MvaI	CCWGG	3 cut(s)	12, 538, 953
MwoI	GCNNNNNNNGC	7 cut(s)	26, 35, 76, 110, 206, 236, 625
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	5 cut(s)	58, 458, 486, 739, 853
NlaIII	CATG	6 cut(s)	37, 344, 662, 749, 811, 929
NlaIV	GGNNCC	2 cut(s)	488, 870
NsiI	ATGCAT	2 cut(s)	232, 660
OliI	CACNNNNGTG	1 cut(s)	794
PagI	TCATGA	1 cut(s)	807
PfeI	GAWTC	2 cut(s)	346, 811
PkrI	GCNGC	5 cut(s)	31, 69, 106, 166, 714
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Psp124BI	GAGCTC	1 cut(s)	630
Psp6I	CCWGG	3 cut(s)	10, 536, 951
PspGI	CCWGG	3 cut(s)	10, 536, 951
PspN4I	GGNNCC	2 cut(s)	488, 870
PspPI	GGNCC	1 cut(s)	308
PsrI	GAACNNNNNNTAC	2 cut(s)	108, 140
PsuI	RGATCY	2 cut(s)	486, 739
PvuII	CAGCTG	2 cut(s)	167, 715
RseI	CAYNNNNRTG	2 cut(s)	636, 794
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	2 cut(s)	648, 693
SatI	GCNGC	5 cut(s)	30, 68, 105, 165, 713
Sau3AI	GATC	5 cut(s)	58, 458, 486, 739, 853
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	3 cut(s)	12, 538, 953
SduI	GDGCHC	1 cut(s)	630
SfaNI	GCATC	2 cut(s)	196, 239
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	2 cut(s)	636, 794
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
SsiI	CCGC	4 cut(s)	179, 237, 306, 562
SspMI	CTAG	2 cut(s)	360, 567
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	3 cut(s)	10, 536, 951
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	773
TaqI	TCGA	4 cut(s)	99, 297, 399, 581
TfiI	GAWTC	2 cut(s)	346, 811
Tru1I	TTAA	2 cut(s)	648, 693
Tru9I	TTAA	2 cut(s)	648, 693
TscAI	CASTG	3 cut(s)	31, 54, 796
TseI	GCWGC	5 cut(s)	29, 67, 104, 164, 712
TspDTI	ATGAA	2 cut(s)	17, 599
TspRI	CASTG	3 cut(s)	31, 54, 796
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	4 cut(s)	217, 259, 283, 644
XspI	CTAG	2 cut(s)	360, 567
Zsp2I	ATGCAT	2 cut(s)	232, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.