Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Forward (+)

32734021 .. 32742367

Gene Structure 8347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCTTCTTCGCGTGCGCCGCTGAAGTTTCTGGTTTTTGATGCACTGAACCTGTTTGATAAAATTCCCCAAAGGCTTTGTGTTTCTTGTGTAGCTGCCATGTCTGGTGGGCCAGTGGTTCAAGATCAACGGCAACGCACTTTGCAAGCATTGGAGCGAAGGTTCGAGGATGCACAAGCTGAACTTGATTTACACCAAATGAAGAACACAAAGAGATTGAAAACCGAAGGGGCTGGAAAGAAACCGCAGGGCTCAAGTTGTTCAGCTGTTGATTCTTCAACGAAGTTAGCTGGTGCACCAACCGCAACTCCATCGAAGAAAGGGAATTTCACCTTTGCTGGTTATGTGAATTCACAAGATCTCGACGAACGCGGTCCAACATATGCAAAACTCTCTCAACCCATACATGAGAATCTACTCATAGATAGTAATGCTGAGGTCTCTGGTAGAAAGGATAGTAAAGTTGATAATGTCTTGCATGAGCTTCTTCAGAGTGGTGACTCTGCTCTGAAGTACATGCAAGGATCAAGAAGTAAGAGGATTGACAATTGGATGCTCCTTGATAATTATGTGCAAGGACGTCGCTGTTTTGGCTCCAGTGCCAGGACATTGCAGCGTAATTCAAAGCGGTCTAGGAAGCGCATGTCGATGAAACAGCAAAAGAAGAATGGATTGTTTGATCTGCCTCGGGAGCTCCATAGCTATGATAAATTTAAGCCAATGCATGAGATGTGGAAAGGCTATATTGTTCAACTTCTTAAAATTATTGGGAAAACGCAGCTGGCTCAGTCTCTTCTTAGTGCAGATCTATGTGGTGCTATTATTTCAGTTGTTGACTGTAAAGTAACTTCCTACACTGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTGGCATAATTACAGAAGATGATCAATTTCGAGTGGTGCCAAAAAGGTTTTCTGTTTTTGTATTTCAAGTTGATTGCTGGAAGATTACCTTGCATGGGGACAAACTGACTTCAAGAAACTTGGGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

342

Amino Acids

38.28

Weight (kDa)

9.6

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P-MRP_p29	PF01868	263 - 338	3.3e-20	Ribonuclease P/MRP, subunit p29

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	583
AccB1I	GGYRCC	1 cut(s)	934
AccII	CGCG	2 cut(s)	13, 372
AciI	CCGC	5 cut(s)	20, 245, 303, 372, 628
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	4 cut(s)	63, 325, 349, 710
AcuI	CTGAAG	3 cut(s)	44, 473, 530
AcyI	GRCGYC	1 cut(s)	580
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	603, 993
AgsI	TTSAA	7 cut(s)	122, 220, 279, 624, 752, 965, 1011
AjnI	CCWGG	1 cut(s)	602
AjuI	GAANNNNNNNTTGG	2 cut(s)	931, 963
AleI	CACNNNNGTG	1 cut(s)	860
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	8 cut(s)	95, 179, 266, 290, 484, 694, 702, 781
AluI	AGCT	8 cut(s)	95, 179, 266, 290, 484, 694, 702, 781
Alw21I	GWGCWC	2 cut(s)	298, 696
Alw26I	GTCTC	2 cut(s)	445, 795
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	532
Ama87I	CYCGRG	1 cut(s)	687
AoxI	GGCC	1 cut(s)	110
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	95, 613, 778
ApoI	RAATTY	4 cut(s)	63, 325, 349, 710
AspLEI	GCGC	2 cut(s)	19, 642
AspS9I	GGNCC	2 cut(s)	110, 374
AsuHPI	GGTGA	2 cut(s)	322, 509
AvaI	CYCGRG	1 cut(s)	687
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	934
BanII	GRGCYC	2 cut(s)	254, 696
BarI	GAAGNNNNNNTAC	2 cut(s)	832, 864
Bbv12I	GWGCWC	2 cut(s)	298, 696
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	3 cut(s)	82, 625, 790
BccI	CCATC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	146
BcgI	CGANNNNNNTGC	4 cut(s)	294, 328, 563, 597
BciT130I	CCWGG	1 cut(s)	604
BclI	TGATCA	1 cut(s)	919
BcoDI	GTCTC	2 cut(s)	445, 795
BfaI	CTAG	1 cut(s)	633
BglII	AGATCT	2 cut(s)	358, 805
BisI	GCNGC	4 cut(s)	20, 96, 614, 779
BlsI	GCNGC	4 cut(s)	21, 97, 615, 780
Bme1390I	CCNGG	1 cut(s)	604
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	687
BmgT120I	GGNCC	2 cut(s)	110, 374
BmiI	GGNNCC	2 cut(s)	595, 936
BmrFI	CCNGG	1 cut(s)	604
BmsI	GCATC	3 cut(s)	31, 160, 543
BpmI	CTGGAG	2 cut(s)	580, 879
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	580
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	686
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 292, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	603, 993
Bse1I	ACTGG	3 cut(s)	113, 597, 862
Bse3DI	GCAATG	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	604
BseDI	CCNNGG	1 cut(s)	686
BseGI	GGATG	2 cut(s)	175, 558
BseLI	CCNNNNNNNGG	2 cut(s)	603, 993
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	2 cut(s)	426, 800
BseNI	ACTGG	3 cut(s)	113, 597, 862
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	82, 625, 790
BsgI	GTGCAG	1 cut(s)	822
Bsh1236I	CGCG	2 cut(s)	13, 372
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	934
BsiHKAI	GWGCWC	2 cut(s)	298, 696
BsiHKCI	CYCGRG	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	1010
BslI	CCNNNNNNNGG	2 cut(s)	603, 993
BsmAI	GTCTC	2 cut(s)	445, 795
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	445
BsoBI	CYCGRG	1 cut(s)	687
Bsp1286I	GDGCHC	3 cut(s)	254, 298, 696
Bsp143I	GATC	6 cut(s)	124, 358, 524, 679, 805, 919
BspACI	CCGC	5 cut(s)	20, 245, 303, 372, 628
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	427, 799
BspFNI	CGCG	2 cut(s)	13, 372
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	2 cut(s)	595, 936
BspPI	GGATC	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	934
BspTNI	GGTCTC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	608
BsrI	ACTGG	3 cut(s)	113, 597, 862
BssECI	CCNNGG	1 cut(s)	686
BssMI	GATC	6 cut(s)	124, 358, 524, 679, 805, 919
BssNI	GRCGYC	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	604
Bst4CI	ACNGT	1 cut(s)	839
Bst6I	CTCTTC	1 cut(s)	798
BstACI	GRCGYC	1 cut(s)	580
BstC8I	GCNNGC	3 cut(s)	15, 147, 783
BstDEI	CTNAG	3 cut(s)	435, 786, 797
BstF5I	GGATG	2 cut(s)	175, 558
BstFNI	CGCG	2 cut(s)	13, 372
BstHHI	GCGC	2 cut(s)	19, 642
BstKTI	GATC	6 cut(s)	127, 361, 527, 682, 808, 922
BstMAI	GTCTC	2 cut(s)	445, 795
BstMBI	GATC	6 cut(s)	124, 358, 524, 679, 805, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 302, 591, 691
BstNI	CCWGG	1 cut(s)	604
BstNSI	RCATGY	2 cut(s)	520, 646
BstSCI	CCNGG	1 cut(s)	602
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	2 cut(s)	13, 372
BstV1I	GCAGC	3 cut(s)	82, 625, 790
BstX2I	RGATCY	2 cut(s)	358, 805
BstYI	RGATCY	2 cut(s)	358, 805
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	175, 558
BtsIMutI	CAGTG	4 cut(s)	44, 120, 604, 855
Cac8I	GCNNGC	3 cut(s)	15, 147, 783
CciI	TCATGA	1 cut(s)	873
CfoI	GCGC	2 cut(s)	19, 642
Cfr13I	GGNCC	2 cut(s)	110, 374
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	8 cut(s)	100, 407, 479, 517, 643, 725, 874, 992
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	3 cut(s)	435, 786, 797
DpnI	GATC	6 cut(s)	126, 360, 526, 681, 807, 921
DpnII	GATC	6 cut(s)	124, 358, 524, 679, 805, 919
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Ecl136II	GAGCTC	1 cut(s)	694
Eco24I	GRGCYC	2 cut(s)	254, 696
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	3 cut(s)	44, 473, 530
Eco88I	CYCGRG	1 cut(s)	687
EcoICRI	GAGCTC	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	602
EcoT22I	ATGCAT	1 cut(s)	726
EcoT38I	GRGCYC	2 cut(s)	254, 696
FaeI	CATG	8 cut(s)	103, 410, 482, 520, 646, 728, 877, 995
FalI	AAGNNNNNCTT	4 cut(s)	168, 200, 971, 1003
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	8 cut(s)	99, 406, 478, 516, 642, 724, 873, 991
FauNDI	CATATG	1 cut(s)	382
FbaI	TGATCA	1 cut(s)	919
Fnu4HI	GCNGC	4 cut(s)	20, 96, 614, 779
FokI	GGATG	2 cut(s)	182, 565
FriOI	GRGCYC	2 cut(s)	254, 696
Fsp4HI	GCNGC	4 cut(s)	20, 96, 614, 779
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	2 cut(s)	18, 641
GluI	GCNGC	4 cut(s)	20, 96, 614, 779
GsuI	CTGGAG	2 cut(s)	580, 879
HaeIII	GGCC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	19, 642
Hin1I	GRCGYC	1 cut(s)	580
Hin1II	CATG	8 cut(s)	103, 410, 482, 520, 646, 728, 877, 995
Hin6I	GCGC	2 cut(s)	17, 640
HinP1I	GCGC	2 cut(s)	17, 640
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	4 cut(s)	272, 412, 500, 877
HphI	GGTGA	2 cut(s)	322, 509
Hpy166II	GTNNAC	2 cut(s)	296, 835
Hpy188I	TCNGA	2 cut(s)	492, 510
Hpy188III	TCNNGA	8 cut(s)	122, 362, 528, 689, 874, 881, 1011, 1026
Hpy8I	GTNNAC	2 cut(s)	296, 835
Hpy99I	CGWCG	2 cut(s)	368, 585
HpyAV	CCTTC	2 cut(s)	153, 221
HpyCH4III	ACNGT	1 cut(s)	839
HpyCH4IV	ACGT	1 cut(s)	580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 302, 591, 691
HpyF3I	CTNAG	3 cut(s)	435, 786, 797
HpySE526I	ACGT	1 cut(s)	580
Hsp92I	GRCGYC	1 cut(s)	580
Hsp92II	CATG	8 cut(s)	103, 410, 482, 520, 646, 728, 877, 995
HspAI	GCGC	2 cut(s)	17, 640
Ksp22I	TGATCA	1 cut(s)	919
Kzo9I	GATC	6 cut(s)	124, 358, 524, 679, 805, 919
LmnI	GCTCC	5 cut(s)	154, 561, 599, 691, 699
Lsp1109I	GCAGC	3 cut(s)	82, 625, 790
LweI	GCATC	3 cut(s)	31, 160, 543
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	2 cut(s)	497, 844
MalI	GATC	6 cut(s)	126, 360, 526, 681, 807, 921
MboI	GATC	6 cut(s)	124, 358, 524, 679, 805, 919
MboII	GAAGA	8 cut(s)	214, 267, 328, 479, 676, 785, 926, 991
MfeI	CAATTG	1 cut(s)	547
MflI	RGATCY	2 cut(s)	358, 805
MhlI	GDGCHC	3 cut(s)	254, 298, 696
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	160, 430, 531, 696
Mph1103I	ATGCAT	1 cut(s)	726
MseI	TTAA	2 cut(s)	714, 759
MslI	CAYNNNNRTG	3 cut(s)	647, 702, 860
MspA1I	CMGCKG	3 cut(s)	22, 266, 781
MspR9I	CCNGG	1 cut(s)	604
MunI	CAATTG	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	604
MvnI	CGCG	2 cut(s)	13, 372
MwoI	GCNNNNNNNGC	4 cut(s)	19, 302, 591, 691
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	6 cut(s)	124, 358, 524, 679, 805, 919
NlaIII	CATG	8 cut(s)	103, 410, 482, 520, 646, 728, 877, 995
NlaIV	GGNNCC	2 cut(s)	595, 936
NmuCI	GTSAC	1 cut(s)	497
NsiI	ATGCAT	1 cut(s)	726
NspI	RCATGY	2 cut(s)	520, 646
OliI	CACNNNNGTG	1 cut(s)	860
PagI	TCATGA	1 cut(s)	873
PfeI	GAWTC	3 cut(s)	272, 412, 877
PkrI	GCNGC	4 cut(s)	21, 97, 615, 780
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	602
PspGI	CCWGG	1 cut(s)	602
PspN4I	GGNNCC	2 cut(s)	595, 936
PspPI	GGNCC	2 cut(s)	110, 374
PsrI	GAACNNNNNNTAC	2 cut(s)	174, 206
PsuI	RGATCY	2 cut(s)	358, 805
PvuII	CAGCTG	2 cut(s)	266, 781
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	3 cut(s)	647, 702, 860
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	714, 759
SatI	GCNGC	4 cut(s)	20, 96, 614, 779
Sau3AI	GATC	6 cut(s)	124, 358, 524, 679, 805, 919
Sau96I	GGNCC	2 cut(s)	110, 374
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	604
SduI	GDGCHC	3 cut(s)	254, 298, 696
SfaNI	GCATC	3 cut(s)	31, 160, 543
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	3 cut(s)	647, 702, 860
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
SsiI	CCGC	5 cut(s)	20, 245, 303, 372, 628
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	1 cut(s)	602
TaaI	ACNGT	1 cut(s)	839
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	5 cut(s)	165, 314, 363, 647, 928
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	3 cut(s)	272, 412, 877
Tru1I	TTAA	2 cut(s)	714, 759
Tru9I	TTAA	2 cut(s)	714, 759
TscAI	CASTG	4 cut(s)	51, 120, 604, 862
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	3 cut(s)	95, 613, 778
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	2 cut(s)	215, 665
TspRI	CASTG	4 cut(s)	51, 120, 604, 862
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	4 cut(s)	63, 325, 349, 710
XceI	RCATGY	2 cut(s)	520, 646
XspI	CTAG	1 cut(s)	633
ZraI	GACGTC	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.