Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Forward (+)

19884938 .. 19898364

Gene Structure 13427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1123900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCTTTATGTTATGCTCTCTGTAAAAACGTCTGCAATCGAAATTCGATCCGCAGGTGGTTTTTTTGCCATGGCCGGTGAAACAATTGTTGACGATCAACGCCAACGCACTTTGAAGGCATTGGAACGAAGGTTTGAGGCTGCCCAAGTCGAGCTCGATTTACATCAAAAGAAGACTGTCAAGAGATCAAAAACCGAGGAAGCTGGAAAGAAATCGCATATTGCAAGTTCTTCAGCTGTTGATTCTTCACCAAATTTAGCAAATCCATCAGCCTCAAGTTCAACTCCATTTAAGAAAGGAGCTTTCACTTTTTCGGGGTATATTAATTCACAAGAGATCGACGAAAGTGGTCCAACATATGCAAAACTAGTTCAATCTGTTGATGAGAATCTGCTGGCAACTAGTGTTGAGGTCTCTGGCGGTAGAAAGGAGAGTAAAGTTGATAAGGTTTTGCACGAGCTTCTTCAGAGTGGAGACTCATCTCAGAAGTACATGCAAGGATCCAGAAGTAAGAGAATTGACAATTGGATTCTCCTCGATAACTATGTGCAAGGACGTGGCGTTTCAACTGGCTCTCATGCCAGGGCGCTGCAGATTCATTCCAAGCGTTCTAAAAAGCACATGTCAATGAAACAGCAAAAAAGGAAGGGATTGTTTGATTTTCCTAAAGATTTTCATAGCTTTGATAAATTTAAGCCAATGCATGAGATGTGGAAAGGCTATATTGTGCAACTCTTAAAAACTACTGGAAAAAATCAGCTGGCTCAGTGTATTCTTAGTGCAGATCTACACGGTGCTATTATTTCAGTTGCCGAGTGTAAAGTAACTTCATACACTGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTGGGATAATTACACAGGATGATAAATTCAGAGTGGTGCCCAAAAAGTTTTCTGTGTTTATATTTCAAGTTGATTGCTGGAAGATTACCTTGCACGGGGACAAACTCACTTCAAGAAACTTGGGCTTAACAGTTAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

340

Amino Acids

37.75

Weight (kDa)

9.63

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P-MRP_p29	PF01868	258 - 331	7.1e-20	Ribonuclease P/MRP, subunit p29

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	913
AciI	CCGC	2 cut(s)	51, 420
AclWI	GGATC	3 cut(s)	42, 495, 508
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	4 cut(s)	42, 253, 689, 902
AcuI	CTGAAG	2 cut(s)	216, 449
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	1 cut(s)	972
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	6 cut(s)	115, 282, 374, 567, 944, 990
AhlI	ACTAGT	2 cut(s)	367, 401
AjiI	CACGTC	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	581
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
AleI	CACNNNNGTG	1 cut(s)	839
AluBI	AGCT	7 cut(s)	154, 203, 236, 302, 460, 681, 760
AluI	AGCT	7 cut(s)	154, 203, 236, 302, 460, 681, 760
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	418, 468
AlwI	GGATC	3 cut(s)	42, 495, 508
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	140, 589
ApoI	RAATTY	4 cut(s)	42, 253, 689, 902
AseI	ATTAAT	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	89, 240
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	918
BamHI	GGATCC	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	913
BanII	GRGCYC	1 cut(s)	156
BarI	GAAGNNNNNNTAC	2 cut(s)	811, 843
BauI	CACGAG	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	127, 576
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	418, 468
BcuI	ACTAGT	2 cut(s)	367, 401
BfaI	CTAG	2 cut(s)	368, 402
BfmI	CTRYAG	1 cut(s)	590
BfoI	RGCGCY	1 cut(s)	590
BfuAI	ACCTGC	1 cut(s)	44
BglII	AGATCT	1 cut(s)	784
BisI	GCNGC	2 cut(s)	141, 590
BlsI	GCNGC	2 cut(s)	142, 591
Bme1390I	CCNGG	1 cut(s)	583
Bme18I	GGWCC	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	502, 915
BmrFI	CCNGG	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	259
BsaBI	GATNNNNATC	2 cut(s)	162, 387
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	3 cut(s)	69, 195, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	972
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	3 cut(s)	574, 751, 841
Bse8I	GATNNNNATC	2 cut(s)	162, 387
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	3 cut(s)	69, 195, 582
BseGI	GGATG	1 cut(s)	901
BseJI	GATNNNNATC	2 cut(s)	162, 387
BseLI	CCNNNNNNNGG	1 cut(s)	972
BseMII	CTCAG	2 cut(s)	497, 779
BseNI	ACTGG	3 cut(s)	574, 751, 841
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	918
BseXI	GCAGC	2 cut(s)	127, 576
BsgI	GTGCAG	1 cut(s)	801
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	913
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	989
BslI	CCNNNNNNNGG	1 cut(s)	972
BsmAI	GTCTC	2 cut(s)	418, 468
BsmFI	GGGAC	1 cut(s)	989
BsnI	GGCC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	156, 918
Bsp143I	GATC	6 cut(s)	47, 94, 185, 336, 500, 784
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	51, 420
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	2 cut(s)	496, 778
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	2 cut(s)	502, 915
BspMAI	CTGCAG	1 cut(s)	594
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	3 cut(s)	42, 495, 508
BspT107I	GGYRCC	1 cut(s)	913
BspTNI	GGTCTC	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	574, 751, 841
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	69, 195, 582
BssMI	GATC	6 cut(s)	47, 94, 185, 336, 500, 784
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	3 cut(s)	178, 794, 1009
BstC8I	GCNNGC	2 cut(s)	396, 762
BstDEI	CTNAG	3 cut(s)	483, 765, 776
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	901
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	6 cut(s)	50, 97, 188, 339, 503, 787
BstMAI	GTCTC	2 cut(s)	418, 468
BstMBI	GATC	6 cut(s)	47, 94, 185, 336, 500, 784
BstNI	CCWGG	1 cut(s)	583
BstNSI	RCATGY	2 cut(s)	496, 625
BstSCI	CCNGG	1 cut(s)	581
BstSFI	CTRYAG	1 cut(s)	590
BstSLI	GKGCMC	1 cut(s)	918
BstV1I	GCAGC	2 cut(s)	127, 576
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	500, 784
BstYI	RGATCY	2 cut(s)	500, 784
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	557
BtsCI	GGATG	1 cut(s)	901
BtsIMutI	CAGTG	2 cut(s)	773, 834
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	396, 762
CciI	TCATGA	1 cut(s)	852
CfoI	GCGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	6 cut(s)	70, 493, 578, 622, 704, 853
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	3 cut(s)	483, 765, 776
DpnI	GATC	6 cut(s)	49, 96, 187, 338, 502, 786
DpnII	GATC	6 cut(s)	47, 94, 185, 336, 500, 784
EaeI	YGGCCR	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	216, 449
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	705
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	6 cut(s)	73, 496, 581, 625, 707, 856
FalI	AAGNNNNNCTT	2 cut(s)	950, 982
FaqI	GGGAC	1 cut(s)	989
FatI	CATG	6 cut(s)	69, 492, 577, 621, 703, 852
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	141, 590
FokI	GGATG	1 cut(s)	908
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	141, 590
FspBI	CTAG	2 cut(s)	368, 402
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	2 cut(s)	141, 590
GsuI	CTGGAG	1 cut(s)	858
HaeII	RGCGCY	1 cut(s)	590
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	6 cut(s)	73, 496, 581, 625, 707, 856
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	6 cut(s)	242, 388, 476, 529, 595, 856
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	89, 240
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	3 cut(s)	468, 486, 908
Hpy188III	TCNNGA	5 cut(s)	181, 504, 853, 860, 990
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	3 cut(s)	109, 123, 640
HpyCH4III	ACNGT	3 cut(s)	178, 794, 1009
HpyCH4IV	ACGT	2 cut(s)	29, 556
HpyF3I	CTNAG	3 cut(s)	483, 765, 776
HpySE526I	ACGT	2 cut(s)	29, 556
Hsp92II	CATG	6 cut(s)	73, 496, 581, 625, 707, 856
HspAI	GCGC	1 cut(s)	587
Kzo9I	GATC	6 cut(s)	47, 94, 185, 336, 500, 784
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	2 cut(s)	127, 576
MaeI	CTAG	2 cut(s)	368, 402
MaeII	ACGT	2 cut(s)	29, 556
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	6 cut(s)	49, 96, 187, 338, 502, 786
MboI	GATC	6 cut(s)	47, 94, 185, 336, 500, 784
MboII	GAAGA	5 cut(s)	184, 222, 237, 455, 970
MfeI	CAATTG	2 cut(s)	84, 523
MflI	RGATCY	2 cut(s)	500, 784
MhlI	GDGCHC	2 cut(s)	156, 918
MluCI	AATT	9 cut(s)	42, 84, 253, 325, 516, 523, 689, 885, 902
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	5 cut(s)	130, 190, 283, 403, 545
Mph1103I	ATGCAT	1 cut(s)	705
MseI	TTAA	6 cut(s)	291, 324, 693, 737, 1004, 1011
MslI	CAYNNNNRTG	2 cut(s)	626, 839
MspA1I	CMGCKG	2 cut(s)	236, 760
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	583
MunI	CAATTG	2 cut(s)	84, 523
MvaI	CCWGG	1 cut(s)	583
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	6 cut(s)	47, 94, 185, 336, 500, 784
NlaIII	CATG	6 cut(s)	73, 496, 581, 625, 707, 856
NlaIV	GGNNCC	2 cut(s)	502, 915
NmeAIII	GCCGAG	1 cut(s)	838
NsiI	ATGCAT	1 cut(s)	705
NspI	RCATGY	2 cut(s)	496, 625
OliI	CACNNNNGTG	1 cut(s)	839
PagI	TCATGA	1 cut(s)	852
PaqCI	CACCTGC	1 cut(s)	44
PciI	ACATGT	1 cut(s)	621
PfeI	GAWTC	5 cut(s)	242, 388, 529, 595, 856
PkrI	GCNGC	2 cut(s)	142, 591
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PscI	ACATGT	1 cut(s)	621
PshBI	ATTAAT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	2 cut(s)	502, 915
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	594
PsuI	RGATCY	2 cut(s)	500, 784
PvuII	CAGCTG	2 cut(s)	236, 760
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	2 cut(s)	626, 839
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	6 cut(s)	291, 324, 693, 737, 1004, 1011
SatI	GCNGC	2 cut(s)	141, 590
Sau3AI	GATC	6 cut(s)	47, 94, 185, 336, 500, 784
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	2 cut(s)	156, 918
SfcI	CTRYAG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	2 cut(s)	626, 839
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SpeI	ACTAGT	2 cut(s)	367, 401
Sse9I	AATT	9 cut(s)	42, 84, 253, 325, 516, 523, 689, 885, 902
SsiI	CCGC	2 cut(s)	51, 420
SspMI	CTAG	2 cut(s)	368, 402
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	581
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	178, 794, 1009
TaiI	ACGT	2 cut(s)	32, 559
TaqI	TCGA	6 cut(s)	39, 46, 150, 156, 339, 537
TasI	AATT	9 cut(s)	42, 84, 253, 325, 516, 523, 689, 885, 902
TatI	WGTACW	1 cut(s)	489
TfiI	GAWTC	5 cut(s)	242, 388, 529, 595, 856
Tru1I	TTAA	6 cut(s)	291, 324, 693, 737, 1004, 1011
Tru9I	TTAA	6 cut(s)	291, 324, 693, 737, 1004, 1011
TscAI	CASTG	2 cut(s)	773, 841
TseI	GCWGC	2 cut(s)	140, 589
TspDTI	ATGAA	4 cut(s)	587, 644, 665, 819
TspRI	CASTG	2 cut(s)	773, 841
VpaK11BI	GGWCC	1 cut(s)	350
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	4 cut(s)	42, 253, 689, 902
XceI	RCATGY	2 cut(s)	496, 625
XspI	CTAG	2 cut(s)	368, 402
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.