Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Forward (+)

19122627 .. 19127855

Gene Structure 5229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1104000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTTATTTTATTTTCGGCTTTTTGTAGCCATGGCTGGTGAGACAGTCGTTGATGATCAACACCGACGCACTTTGAAGGCGTTGGAGCGGAGGTTTGAGGCTGCCCAAGCTGAGCTCGATATACATAAAAAAAAGACTGTAAAGAGATCAAAAACCGAGGAAGCTGGAAAGAAATTGCACATCTCAAGTTCTTTGGCTGTTGATTCTTCACCAAATTTAGCAAATACATCAGCCTCAAGTTCAACTCCATCTAAGAAAGATATCGATGAAAGTGGTCCAACATATGCAAAACTAGCTCAATCTGTTGATGAGAATCTGCTGAAAACTAGTGTTGAGGTCTCTGGCGGTAGACAGGAGAGTAAAGTTGATAAGGTTTTGCACAAGCTTCTTCAGAGTGGAGACTCAGCTCAGAAGTACATGCAAGGATCCAGAAGCAAGAGAATTGACAATTGGATCCTCCTCGATAACTACGTGCAAGGATGTGGTGTTTTGACTGGCTCTCGTGCCAGGGCACTGCTGATTCATTCCATGCGTTCTAAAAAGAACATGTCAATGAAACAGCAAAAAAAGAAGGGATTGTTTGATTTTCCTAAAGATTTTCACAGCTTTGATGAATTTAAGTCGATGCATGAGATGTGGAAAGGCTATATTATGCAACTCTTAAAATCTACTGGGAAAAATCAGCTGGCTCAGTTTCTTCTTAGTGCAGATCTACACGGTGCTATTATTTCAGTTCCTGTCTATTTACTGGCAGTTGCCGAGTGTAAAGTAACTTCAGACACTGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTGGGATAATTACACAGGATGATAAATTCAGAGTGGTGCCCAAAATGTTTTCTGTTTTTATATTTCAAGTTGATTGCTGGAAGATTACCTTGCATGGGGATAAACTCACTTCAAGAAACTTGGGCTTTTCCTCGAGACTGGTTGCTTCAGAGTTAAGACGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

330

Amino Acids

36.95

Weight (kDa)

9.62

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P-MRP_p29	PF01868	233 - 313	9.4e-15	Ribonuclease P/MRP, subunit p29

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	859
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	349
AciI	CCGC	2 cut(s)	88, 345
AclWI	GGATC	4 cut(s)	420, 433, 448, 461
AcsI	RAATTY	3 cut(s)	214, 614, 848
AcuI	CTGAAG	3 cut(s)	374, 759, 954
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	918
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	4 cut(s)	76, 243, 890, 936
AhlI	ACTAGT	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	506
AjuI	GAANNNNNNNTTGG	2 cut(s)	433, 465
AleI	CACNNNNGTG	1 cut(s)	785
AluBI	AGCT	8 cut(s)	110, 115, 164, 296, 385, 407, 606, 685
AluI	AGCT	8 cut(s)	110, 115, 164, 296, 385, 407, 606, 685
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	4 cut(s)	35, 343, 393, 952
AlwI	GGATC	4 cut(s)	420, 433, 448, 461
AlwNI	CAGNNNCTG	2 cut(s)	737, 782
Ama87I	CYCGRG	1 cut(s)	955
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	3 cut(s)	214, 614, 848
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	50, 201
AvaI	CYCGRG	1 cut(s)	955
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	2 cut(s)	514, 864
BamHI	GGATCC	2 cut(s)	425, 453
BanI	GGYRCC	1 cut(s)	859
BanII	GRGCYC	1 cut(s)	117
BarI	GAAGNNNNNNTAC	2 cut(s)	757, 789
BauI	CACGAG	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	508
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	4 cut(s)	35, 343, 393, 952
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	2 cut(s)	293, 327
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	1 cut(s)	102
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	508
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	955
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	3 cut(s)	427, 455, 861
BmrFI	CCNGG	1 cut(s)	508
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	1 cut(s)	615
BmuI	ACTGGG	1 cut(s)	681
BpmI	CTGGAG	1 cut(s)	804
Bpu1102I	GCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	169, 220
Bsa29I	ATCGAT	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	3 cut(s)	30, 156, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	918
Bse1I	ACTGG	5 cut(s)	499, 676, 753, 787, 966
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	508
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	30, 156, 507
BseGI	GGATG	2 cut(s)	485, 847
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	918
BseMII	CTCAG	4 cut(s)	102, 417, 422, 704
BseNI	ACTGG	5 cut(s)	499, 676, 753, 787, 966
BseRI	GAGGAG	1 cut(s)	449
BseSI	GKGCMC	2 cut(s)	514, 864
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	726
BshNI	GGYRCC	1 cut(s)	859
BshVI	ATCGAT	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	955
BslI	CCNNNNNNNGG	1 cut(s)	918
BsmAI	GTCTC	4 cut(s)	35, 343, 393, 952
Bso31I	GGTCTC	1 cut(s)	343
BsoBI	CYCGRG	1 cut(s)	955
Bsp1286I	GDGCHC	3 cut(s)	117, 514, 864
Bsp143I	GATC	5 cut(s)	55, 146, 425, 453, 709
Bsp1720I	GCTNAGC	1 cut(s)	111
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	2 cut(s)	88, 345
BspCNI	CTCAG	4 cut(s)	103, 416, 421, 703
BspDI	ATCGAT	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	3 cut(s)	427, 455, 861
BspPI	GGATC	4 cut(s)	420, 433, 448, 461
BspT107I	GGYRCC	1 cut(s)	859
BspTNI	GGTCTC	1 cut(s)	343
BsrBI	CCGCTC	1 cut(s)	88
BsrI	ACTGG	5 cut(s)	499, 676, 753, 787, 966
BssECI	CCNNGG	3 cut(s)	30, 156, 507
BssMI	GATC	5 cut(s)	55, 146, 425, 453, 709
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	4 cut(s)	46, 139, 719, 984
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	6 cut(s)	111, 252, 403, 408, 690, 701
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	485, 847
BstKTI	GATC	5 cut(s)	58, 149, 428, 456, 712
BstMAI	GTCTC	4 cut(s)	35, 343, 393, 952
BstMBI	GATC	5 cut(s)	55, 146, 425, 453, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 293
BstNI	CCWGG	1 cut(s)	508
BstNSI	RCATGY	2 cut(s)	421, 550
BstSCI	CCNGG	1 cut(s)	506
BstSLI	GKGCMC	2 cut(s)	514, 864
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	3 cut(s)	425, 453, 709
BstYI	RGATCY	3 cut(s)	425, 453, 709
Bsu15I	ATCGAT	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	485, 847
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	2 cut(s)	512, 780
Cac8I	GCNNGC	1 cut(s)	687
CaiI	CAGNNNCTG	2 cut(s)	737, 782
CciI	TCATGA	1 cut(s)	798
Cfr13I	GGNCC	1 cut(s)	275
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	7 cut(s)	31, 418, 529, 547, 629, 799, 917
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	6 cut(s)	111, 252, 403, 408, 690, 701
DpnI	GATC	5 cut(s)	57, 148, 427, 455, 711
DpnII	GATC	5 cut(s)	55, 146, 425, 453, 709
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	3 cut(s)	374, 759, 954
Eco88I	CYCGRG	1 cut(s)	955
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	506
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	7 cut(s)	34, 421, 532, 550, 632, 802, 920
FalI	AAGNNNNNCTT	2 cut(s)	896, 928
FatI	CATG	7 cut(s)	30, 417, 528, 546, 628, 798, 916
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	2 cut(s)	492, 854
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	2 cut(s)	293, 327
GluI	GCNGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	804
HgaI	GACGC	1 cut(s)	75
Hin1II	CATG	7 cut(s)	34, 421, 532, 550, 632, 802, 920
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	5 cut(s)	203, 313, 401, 520, 802
HphI	GGTGA	2 cut(s)	50, 201
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	5 cut(s)	393, 411, 778, 854, 973
Hpy188III	TCNNGA	5 cut(s)	429, 799, 806, 936, 957
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	70, 565
HpyCH4III	ACNGT	4 cut(s)	46, 139, 719, 984
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	9 cut(s)	178, 287, 379, 421, 475, 628, 655, 707, 916
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 293
HpyF3I	CTNAG	6 cut(s)	111, 252, 403, 408, 690, 701
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	7 cut(s)	34, 421, 532, 550, 632, 802, 920
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	5 cut(s)	55, 146, 425, 453, 709
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	2 cut(s)	293, 327
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	769
MalI	GATC	5 cut(s)	57, 148, 427, 455, 711
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	5 cut(s)	55, 146, 425, 453, 709
MboII	GAAGA	4 cut(s)	198, 380, 689, 916
MfeI	CAATTG	1 cut(s)	448
MflI	RGATCY	3 cut(s)	425, 453, 709
MhlI	GDGCHC	3 cut(s)	117, 514, 864
MluCI	AATT	7 cut(s)	173, 214, 441, 448, 614, 831, 848
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	2 cut(s)	63, 302
MnlI	CCTC	8 cut(s)	84, 91, 151, 244, 328, 467, 470, 964
Mph1103I	ATGCAT	1 cut(s)	630
MseI	TTAA	3 cut(s)	618, 662, 977
MslI	CAYNNNNRTG	2 cut(s)	551, 785
MspA1I	CMGCKG	1 cut(s)	685
MspR9I	CCNGG	1 cut(s)	508
MunI	CAATTG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	2 cut(s)	107, 293
NcoI	CCATGG	1 cut(s)	30
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	5 cut(s)	55, 146, 425, 453, 709
NlaIII	CATG	7 cut(s)	34, 421, 532, 550, 632, 802, 920
NlaIV	GGNNCC	3 cut(s)	427, 455, 861
NmeAIII	GCCGAG	1 cut(s)	784
NsiI	ATGCAT	1 cut(s)	630
NspI	RCATGY	2 cut(s)	421, 550
OliI	CACNNNNGTG	1 cut(s)	785
PaeR7I	CTCGAG	1 cut(s)	955
PagI	TCATGA	1 cut(s)	798
PciI	ACATGT	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	203, 313, 520, 802
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
Ppu21I	YACGTR	1 cut(s)	472
PscI	ACATGT	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	3 cut(s)	427, 455, 861
PspPI	GGNCC	1 cut(s)	275
PstNI	CAGNNNCTG	2 cut(s)	737, 782
PsuI	RGATCY	3 cut(s)	425, 453, 709
PvuII	CAGCTG	1 cut(s)	685
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	2 cut(s)	551, 785
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	618, 662, 977
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	5 cut(s)	55, 146, 425, 453, 709
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	508
SduI	GDGCHC	3 cut(s)	117, 514, 864
SfaNI	GCATC	1 cut(s)	615
Sfr274I	CTCGAG	1 cut(s)	955
SinI	GGWCC	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	955
SmiMI	CAYNNNNRTG	2 cut(s)	551, 785
SmlI	CTYRAG	3 cut(s)	184, 235, 955
SmoI	CTYRAG	3 cut(s)	184, 235, 955
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	7 cut(s)	173, 214, 441, 448, 614, 831, 848
SsiI	CCGC	2 cut(s)	88, 345
SspMI	CTAG	2 cut(s)	293, 327
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	506
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	4 cut(s)	46, 139, 719, 984
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	5 cut(s)	117, 264, 462, 623, 956
TasI	AATT	7 cut(s)	173, 214, 441, 448, 614, 831, 848
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	4 cut(s)	203, 313, 520, 802
Tru1I	TTAA	3 cut(s)	618, 662, 977
Tru9I	TTAA	3 cut(s)	618, 662, 977
TscAI	CASTG	2 cut(s)	519, 787
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	4 cut(s)	282, 512, 569, 627
TspRI	CASTG	2 cut(s)	519, 787
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	3 cut(s)	214, 614, 848
XceI	RCATGY	2 cut(s)	421, 550
XhoI	CTCGAG	1 cut(s)	955
XmiI	GTMKAC	1 cut(s)	349
XspI	CTAG	2 cut(s)	293, 327
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.