Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Reverse (-)

49544399 .. 49552244

Gene Structure 7846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG365200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCGTCTTCTTCGCGTGCGCCGCTGAAGTTTCTGGTTTTTGATGCACCGAACCTGTTTGATAAAATTCCCCAAAGGCTTTGTGTTTCTTGTGTAGCTGCCATGTCTGGTGGGCCAGTGGTTCAGGATCAACGGCAACGCACTTTGCAAGCATTGGAGCGAAGGTTTGAGGATGCACAAGCCGAACTTGATTTACACCAAACGAAGAACACAAAGAGATTGAAAACCGAAGGGGCTGGAAAGAAACCGCAGGGCTCAAGTTGTTCAGCTGTTGATTCTTCAACGAAGTTAGCTGATGCACCAACCGCAACTCCATCGAAGAAAGGGAATTTCACCTTTGCTGGTTATGTGAATTCACAAGATCTTGACGAACACGGTCCAACATATGCAAAACTCTCTCAACCCATACATGAGAATCTACTCATAGGTAGTAATGCTGAGGTCTCTGGTAGAAAGGATAGTAAAGTTGATAATGTCTTGCACGAGCTTCTTCAGAGTGGTGACTCTGCTCTGAAGTACATGCAAGGATCAAGAAGCAAGAGGATTGACAATTGGATGCTCCTTGATAATTATGTGCAAGGACGTCGCTGTTTTGGCTCCAGTGCCAGGACATTGCAGCGTAATTCAAAGCGGTCTAGGAAGCGCATGTCGATGAAACAGCAAAAGAAGAATGGATTGTTTGATCTGCCTCGGGAGCTCCATAGCTATGATAAATTTAAGCCAATGCATGAGATGTGGAAAGGCTATATTGCTCAACTTCTTAAAATTATTGGGAAAACGCAGCTGGCTCAGTCTCTTCTTAGTGCAGATCTATGTGGTGCTATTATTTCAGTTGTTGACTGTAAAGTAACTTCCTACACTGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTGGCATAATTACAGAAGATGATCAATTTCGAGTGGTGCCAAAAAGGTTTTCTGTTTTTGTATTTCAAGTTGATTGCTGGAAGATTACCTTGCATGGGGACAAACTGACTTCAAGAAACTTGGGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

343

Amino Acids

38.28

Weight (kDa)

9.55

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P-MRP_p29	PF01868	264 - 339	3.3e-20	Ribonuclease P/MRP, subunit p29

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	937
AccII	CGCG	1 cut(s)	16
AciI	CCGC	4 cut(s)	23, 248, 306, 631
AclWI	GGATC	2 cut(s)	135, 535
AcsI	RAATTY	4 cut(s)	66, 328, 352, 713
AcuI	CTGAAG	3 cut(s)	47, 476, 533
AcyI	GRCGYC	1 cut(s)	583
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	2 cut(s)	606, 996
AgsI	TTSAA	5 cut(s)	223, 282, 627, 968, 1014
AjnI	CCWGG	1 cut(s)	605
AjuI	GAANNNNNNNTTGG	2 cut(s)	934, 966
AleI	CACNNNNGTG	1 cut(s)	863
AluBI	AGCT	7 cut(s)	98, 269, 293, 487, 697, 705, 784
AluI	AGCT	7 cut(s)	98, 269, 293, 487, 697, 705, 784
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	2 cut(s)	448, 798
AlwI	GGATC	2 cut(s)	135, 535
Ama87I	CYCGRG	1 cut(s)	690
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	3 cut(s)	98, 616, 781
ApoI	RAATTY	4 cut(s)	66, 328, 352, 713
AspLEI	GCGC	2 cut(s)	22, 645
AspS9I	GGNCC	2 cut(s)	113, 377
AsuHPI	GGTGA	2 cut(s)	325, 512
AvaI	CYCGRG	1 cut(s)	690
AvaII	GGWCC	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	937
BanII	GRGCYC	2 cut(s)	257, 699
BarI	GAAGNNNNNNTAC	2 cut(s)	835, 867
BauI	CACGAG	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	699
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	85, 628, 793
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	4 cut(s)	297, 331, 566, 600
BciT130I	CCWGG	1 cut(s)	607
BclI	TGATCA	1 cut(s)	922
BcoDI	GTCTC	2 cut(s)	448, 798
BfaI	CTAG	1 cut(s)	636
BglII	AGATCT	2 cut(s)	361, 808
BisI	GCNGC	4 cut(s)	23, 99, 617, 782
BlsI	GCNGC	4 cut(s)	24, 100, 618, 783
Bme1390I	CCNGG	1 cut(s)	607
Bme18I	GGWCC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	690
BmgT120I	GGNCC	2 cut(s)	113, 377
BmiI	GGNNCC	2 cut(s)	598, 939
BmrFI	CCNGG	1 cut(s)	607
BmsI	GCATC	4 cut(s)	34, 163, 286, 546
BpmI	CTGGAG	2 cut(s)	583, 882
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	583
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	689
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 295, 325
Bsc4I	CCNNNNNNNGG	2 cut(s)	606, 996
Bse1I	ACTGG	3 cut(s)	116, 600, 865
Bse3DI	GCAATG	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	1 cut(s)	689
BseGI	GGATG	2 cut(s)	178, 561
BseLI	CCNNNNNNNGG	2 cut(s)	606, 996
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	2 cut(s)	429, 803
BseNI	ACTGG	3 cut(s)	116, 600, 865
BseXI	GCAGC	3 cut(s)	85, 628, 793
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	115
BshNI	GGYRCC	1 cut(s)	937
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	1013
BslI	CCNNNNNNNGG	2 cut(s)	606, 996
BsmAI	GTCTC	2 cut(s)	448, 798
BsmFI	GGGAC	1 cut(s)	1013
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	448
BsoBI	CYCGRG	1 cut(s)	690
Bsp1286I	GDGCHC	2 cut(s)	257, 699
Bsp143I	GATC	6 cut(s)	127, 361, 527, 682, 808, 922
BspACI	CCGC	4 cut(s)	23, 248, 306, 631
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	2 cut(s)	430, 802
BspFNI	CGCG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	876
BspLI	GGNNCC	2 cut(s)	598, 939
BspPI	GGATC	2 cut(s)	135, 535
BspT107I	GGYRCC	1 cut(s)	937
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	3 cut(s)	116, 600, 865
BssECI	CCNNGG	1 cut(s)	689
BssMI	GATC	6 cut(s)	127, 361, 527, 682, 808, 922
BssNI	GRCGYC	1 cut(s)	583
BssSI	CACGAG	1 cut(s)	482
Bst2BI	CACGAG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	2 cut(s)	377, 842
Bst6I	CTCTTC	1 cut(s)	801
BstACI	GRCGYC	1 cut(s)	583
BstC8I	GCNNGC	3 cut(s)	18, 150, 786
BstDEI	CTNAG	3 cut(s)	438, 789, 800
BstF5I	GGATG	2 cut(s)	178, 561
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	2 cut(s)	22, 645
BstKTI	GATC	6 cut(s)	130, 364, 530, 685, 811, 925
BstMAI	GTCTC	2 cut(s)	448, 798
BstMBI	GATC	6 cut(s)	127, 361, 527, 682, 808, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 305, 594, 694
BstNI	CCWGG	1 cut(s)	607
BstNSI	RCATGY	2 cut(s)	523, 649
BstSCI	CCNGG	1 cut(s)	605
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	85, 628, 793
BstX2I	RGATCY	2 cut(s)	361, 808
BstYI	RGATCY	2 cut(s)	361, 808
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	178, 561
BtsIMutI	CAGTG	3 cut(s)	123, 607, 858
Cac8I	GCNNGC	3 cut(s)	18, 150, 786
CciI	TCATGA	1 cut(s)	876
CfoI	GCGC	2 cut(s)	22, 645
Cfr13I	GGNCC	2 cut(s)	113, 377
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	7 cut(s)	103, 410, 520, 646, 728, 877, 995
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	3 cut(s)	438, 789, 800
DpnI	GATC	6 cut(s)	129, 363, 529, 684, 810, 924
DpnII	GATC	6 cut(s)	127, 361, 527, 682, 808, 922
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Ecl136II	GAGCTC	1 cut(s)	697
Eco24I	GRGCYC	2 cut(s)	257, 699
Eco31I	GGTCTC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	3 cut(s)	47, 476, 533
Eco88I	CYCGRG	1 cut(s)	690
EcoICRI	GAGCTC	1 cut(s)	697
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	605
EcoT22I	ATGCAT	1 cut(s)	729
EcoT38I	GRGCYC	2 cut(s)	257, 699
FaeI	CATG	7 cut(s)	106, 413, 523, 649, 731, 880, 998
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 974, 1006
FaqI	GGGAC	1 cut(s)	1013
FatI	CATG	7 cut(s)	102, 409, 519, 645, 727, 876, 994
FauNDI	CATATG	1 cut(s)	385
FbaI	TGATCA	1 cut(s)	922
Fnu4HI	GCNGC	4 cut(s)	23, 99, 617, 782
FokI	GGATG	2 cut(s)	185, 568
FriOI	GRGCYC	2 cut(s)	257, 699
Fsp4HI	GCNGC	4 cut(s)	23, 99, 617, 782
FspBI	CTAG	1 cut(s)	636
GlaI	GCGC	2 cut(s)	21, 644
GluI	GCNGC	4 cut(s)	23, 99, 617, 782
GsuI	CTGGAG	2 cut(s)	583, 882
HaeIII	GGCC	1 cut(s)	115
HhaI	GCGC	2 cut(s)	22, 645
Hin1I	GRCGYC	1 cut(s)	583
Hin1II	CATG	7 cut(s)	106, 413, 523, 649, 731, 880, 998
Hin6I	GCGC	2 cut(s)	20, 643
HinP1I	GCGC	2 cut(s)	20, 643
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HinfI	GANTC	4 cut(s)	275, 415, 503, 880
HphI	GGTGA	2 cut(s)	325, 512
Hpy166II	GTNNAC	1 cut(s)	838
Hpy188I	TCNGA	2 cut(s)	495, 513
Hpy188III	TCNNGA	8 cut(s)	125, 365, 531, 692, 877, 884, 1014, 1029
Hpy8I	GTNNAC	1 cut(s)	838
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	2 cut(s)	156, 224
HpyCH4III	ACNGT	2 cut(s)	377, 842
HpyCH4IV	ACGT	1 cut(s)	583
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 305, 594, 694
HpyF3I	CTNAG	3 cut(s)	438, 789, 800
HpySE526I	ACGT	1 cut(s)	583
Hsp92I	GRCGYC	1 cut(s)	583
Hsp92II	CATG	7 cut(s)	106, 413, 523, 649, 731, 880, 998
HspAI	GCGC	2 cut(s)	20, 643
Ksp22I	TGATCA	1 cut(s)	922
Kzo9I	GATC	6 cut(s)	127, 361, 527, 682, 808, 922
LmnI	GCTCC	5 cut(s)	157, 564, 602, 694, 702
Lsp1109I	GCAGC	3 cut(s)	85, 628, 793
LweI	GCATC	4 cut(s)	34, 163, 286, 546
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	2 cut(s)	500, 847
MalI	GATC	6 cut(s)	129, 363, 529, 684, 810, 924
MboI	GATC	6 cut(s)	127, 361, 527, 682, 808, 922
MboII	GAAGA	9 cut(s)	3, 217, 270, 331, 482, 679, 788, 929, 994
MfeI	CAATTG	1 cut(s)	550
MflI	RGATCY	2 cut(s)	361, 808
MhlI	GDGCHC	2 cut(s)	257, 699
MlyI	GAGTC	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	4 cut(s)	163, 433, 534, 699
Mph1103I	ATGCAT	1 cut(s)	729
MseI	TTAA	2 cut(s)	717, 762
MslI	CAYNNNNRTG	3 cut(s)	650, 705, 863
MspA1I	CMGCKG	3 cut(s)	25, 269, 784
MspR9I	CCNGG	1 cut(s)	607
MunI	CAATTG	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	607
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	22, 305, 594, 694
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	6 cut(s)	127, 361, 527, 682, 808, 922
NlaIII	CATG	7 cut(s)	106, 413, 523, 649, 731, 880, 998
NlaIV	GGNNCC	2 cut(s)	598, 939
NmuCI	GTSAC	1 cut(s)	500
NsiI	ATGCAT	1 cut(s)	729
NspI	RCATGY	2 cut(s)	523, 649
OliI	CACNNNNGTG	1 cut(s)	863
PagI	TCATGA	1 cut(s)	876
PfeI	GAWTC	3 cut(s)	275, 415, 880
PkrI	GCNGC	4 cut(s)	24, 100, 618, 783
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	2 cut(s)	598, 939
PspPI	GGNCC	2 cut(s)	113, 377
PsrI	GAACNNNNNNTAC	2 cut(s)	177, 209
PsuI	RGATCY	2 cut(s)	361, 808
PvuII	CAGCTG	2 cut(s)	269, 784
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	3 cut(s)	650, 705, 863
SacI	GAGCTC	1 cut(s)	699
SaqAI	TTAA	2 cut(s)	717, 762
SatI	GCNGC	4 cut(s)	23, 99, 617, 782
Sau3AI	GATC	6 cut(s)	127, 361, 527, 682, 808, 922
Sau96I	GGNCC	2 cut(s)	113, 377
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	607
SduI	GDGCHC	2 cut(s)	257, 699
SfaNI	GCATC	4 cut(s)	34, 163, 286, 546
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	3 cut(s)	650, 705, 863
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SsiI	CCGC	4 cut(s)	23, 248, 306, 631
SspMI	CTAG	1 cut(s)	636
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	605
TaaI	ACNGT	2 cut(s)	377, 842
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	3 cut(s)	317, 650, 931
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	3 cut(s)	275, 415, 880
Tru1I	TTAA	2 cut(s)	717, 762
Tru9I	TTAA	2 cut(s)	717, 762
TscAI	CASTG	3 cut(s)	123, 607, 865
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	3 cut(s)	98, 616, 781
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	668
TspRI	CASTG	3 cut(s)	123, 607, 865
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	4 cut(s)	66, 328, 352, 713
XceI	RCATGY	2 cut(s)	523, 649
XspI	CTAG	1 cut(s)	636
ZraI	GACGTC	1 cut(s)	584
Zsp2I	ATGCAT	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.