RLG00000024404

Ribonuclease P protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006825
Physical Location & Seq
Forward (+)
35522447 .. 35526040
3594 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024404

Sequence Viewer

Length: 930 bp
ATGGCTAGTGAGCCAGTGATTCAGGATCAACGGGAACGCACTTTGCAGGCATTGGAGCGAAGGTTTGAGGCTGCTCAAGCCGAACTTGATTTACACCAAACGAAGAACACGAAGAGATTGAAAACCGAAGGAGCTGGAAAGAAACCGCAGAGCTCAAGTTCTTCAGCTGTTGATTCTTCACTGAAGATAGCTAATGCATCAACCGCTACCCCATCAAAGAAAGGGAATTTCACCTTTGCTGGTTATGTGAATTCACAAGATATCGACGAAAGCGGTCCAACATATGCAAAACTCTCTCAGCCTATACATGAGAATCTACTCACATCTAGTAATGTTGAGGTCTCTGGTAGAAAGGAAAGTAAAGTTGATAATGTCTTGCACGAGCTTCTTCAGAGTGGCGACTCTGCTCTGAAGTACATGCAAGGATCAAGAAGCAAGAGGATTGACAATTGGATGCTCCTTGATAATTATGTGCAAGGACGTCGCTGTTCTGGCTCCCGTGCCAGGGCATTGCAAAGTAATTCAAAGCGGTCTAGGAAGCGTATGTCGATGAAACAGCAAAAGAAGAATGGATTGTTTGATTTGCCTCCAGAACTCCATAGCTATGATAAATTTAAGCCAATGCATGAGATGTGGAAAGGCTATATCACACAACTTCTTAAAATTACTGGGAAAACGCAGCTGGCTCAGTCTCTTCTTAGTGCAGATCTACATGGTGCTATTATTTCAGTTGTTGACTGTAAAGTAACTTCCTACACTGGAGTGAGTGGTATCATGATTCGTGAAACAGCAGAAACATTTGGCATAATTACAGAAGATGATAAATTCCAAGTGGTGCCAAAAAGGTTTTCTGTTTTTGTATTTCAAATTGATTGCTGGAAGATTACCTTGCATGGGGACAAACTGACATCAAGAAACTTGGGTTCGTGA

Protein Analysis

310

Amino Acids

34.55

Weight (kDa)

9.58

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_P-MRP_p29 PF01868 230 - 305 9.2e-21 Ribonuclease P/MRP, subunit p29
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 484
AccB1I GGYRCC 1 cut(s) 835
AciI CCGC 4 cut(s) 146, 204, 273, 529
AclWI GGATC 2 cut(s) 33, 433
AcsI RAATTY 4 cut(s) 226, 250, 611, 824
AcuI CTGAAG 4 cut(s) 147, 203, 374, 431
AcyI GRCGYC 1 cut(s) 481
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 3 cut(s) 504, 505, 894
AgsI TTSAA 3 cut(s) 121, 525, 866
AjnI CCWGG 1 cut(s) 503
AjuI GAANNNNNNNTTGG 2 cut(s) 832, 864
AleI CACNNNNGTG 1 cut(s) 761
AluBI AGCT 7 cut(s) 134, 153, 167, 191, 385, 603, 682
AluI AGCT 7 cut(s) 134, 153, 167, 191, 385, 603, 682
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 2 cut(s) 346, 696
AlwI GGATC 2 cut(s) 33, 433
ApeKI GCWGC 2 cut(s) 71, 679
ApoI RAATTY 4 cut(s) 226, 250, 611, 824
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 275
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 733, 765
BauI CACGAG 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 58, 691
BccI CCATC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 346, 696
BfaI CTAG 3 cut(s) 6, 327, 534
BglII AGATCT 1 cut(s) 706
BisI GCNGC 2 cut(s) 72, 680
BlsI GCNGC 2 cut(s) 73, 681
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 496, 837
BmrFI CCNGG 1 cut(s) 505
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 2 cut(s) 206, 444
BmuI ACTGGG 1 cut(s) 678
BpmI CTGGAG 2 cut(s) 573, 780
BpuEI CTTGAG 2 cut(s) 60, 139
BsaHI GRCGYC 1 cut(s) 481
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 3 cut(s) 504, 505, 894
Bse1I ACTGG 3 cut(s) 14, 673, 763
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 459
BseLI CCNNNNNNNGG 3 cut(s) 504, 505, 894
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 2 cut(s) 311, 701
BseNI ACTGG 3 cut(s) 14, 673, 763
BseXI GCAGC 2 cut(s) 58, 691
BsgI GTGCAG 1 cut(s) 723
BshNI GGYRCC 1 cut(s) 835
BsiHKAI GWGCWC 1 cut(s) 155
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 3 cut(s) 504, 505, 894
BsmAI GTCTC 2 cut(s) 346, 696
BsmFI GGGAC 1 cut(s) 911
Bso31I GGTCTC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 25, 425, 706
BspACI CCGC 4 cut(s) 146, 204, 273, 529
BspCNI CTCAG 2 cut(s) 310, 700
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 2 cut(s) 496, 837
BspPI GGATC 2 cut(s) 33, 433
BspT107I GGYRCC 1 cut(s) 835
BspTNI GGTCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 3 cut(s) 14, 673, 763
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 3 cut(s) 25, 425, 706
BssNI GRCGYC 1 cut(s) 481
BssSI CACGAG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 1 cut(s) 740
Bst6I CTCTTC 2 cut(s) 107, 699
BstACI GRCGYC 1 cut(s) 481
BstC8I GCNNGC 2 cut(s) 48, 684
BstDEI CTNAG 3 cut(s) 297, 687, 698
BstF5I GGATG 1 cut(s) 459
BstKTI GATC 3 cut(s) 28, 428, 709
BstMAI GTCTC 2 cut(s) 346, 696
BstMBI GATC 3 cut(s) 25, 425, 706
BstMWI GCNNNNNNNGC 3 cut(s) 77, 203, 492
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 503
BstV1I GCAGC 2 cut(s) 58, 691
BstX2I RGATCY 1 cut(s) 706
BstYI RGATCY 1 cut(s) 706
BtsCI GGATG 1 cut(s) 459
BtsIMutI CAGTG 3 cut(s) 21, 179, 756
Cac8I GCNNGC 2 cut(s) 48, 684
CciI TCATGA 1 cut(s) 774
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 415
CviAII CATG 6 cut(s) 308, 418, 626, 713, 775, 893
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 3 cut(s) 297, 687, 698
DpnI GATC 3 cut(s) 27, 427, 708
DpnII GATC 3 cut(s) 25, 425, 706
Eam1104I CTCTTC 2 cut(s) 107, 699
EarI CTCTTC 2 cut(s) 107, 699
Ecl136II GAGCTC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 346
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 153
Eco57I CTGAAG 4 cut(s) 147, 203, 374, 431
EcoICRI GAGCTC 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 503
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 2 cut(s) 199, 627
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 6 cut(s) 311, 421, 629, 716, 778, 896
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 872, 904
FaqI GGGAC 1 cut(s) 911
FatI CATG 6 cut(s) 307, 417, 625, 712, 774, 892
FauNDI CATATG 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 72, 680
FokI GGATG 1 cut(s) 466
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 72, 680
FspBI CTAG 3 cut(s) 6, 327, 534
GluI GCNGC 2 cut(s) 72, 680
GsuI CTGGAG 2 cut(s) 573, 780
Hin1I GRCGYC 1 cut(s) 481
Hin1II CATG 6 cut(s) 311, 421, 629, 716, 778, 896
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HinfI GANTC 5 cut(s) 19, 173, 313, 401, 778
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 736
Hpy188I TCNGA 2 cut(s) 393, 411
Hpy188III TCNNGA 7 cut(s) 23, 429, 590, 775, 782, 912, 927
Hpy8I GTNNAC 1 cut(s) 736
Hpy99I CGWCG 2 cut(s) 269, 486
HpyAV CCTTC 2 cut(s) 54, 122
HpyCH4III ACNGT 1 cut(s) 740
HpyCH4IV ACGT 1 cut(s) 481
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 203, 492
HpyF3I CTNAG 3 cut(s) 297, 687, 698
HpySE526I ACGT 1 cut(s) 481
Hsp92I GRCGYC 1 cut(s) 481
Hsp92II CATG 6 cut(s) 311, 421, 629, 716, 778, 896
Kzo9I GATC 3 cut(s) 25, 425, 706
LmnI GCTCC 4 cut(s) 55, 131, 462, 500
Lsp1109I GCAGC 2 cut(s) 58, 691
LweI GCATC 2 cut(s) 206, 444
MaeI CTAG 3 cut(s) 6, 327, 534
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 1 cut(s) 745
MalI GATC 3 cut(s) 27, 427, 708
MboI GATC 3 cut(s) 25, 425, 706
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 1 cut(s) 155
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 302
MnlI CCTC 4 cut(s) 61, 331, 432, 597
Mph1103I ATGCAT 2 cut(s) 199, 627
MseI TTAA 2 cut(s) 615, 660
MslI CAYNNNNRTG 2 cut(s) 603, 761
MspA1I CMGCKG 2 cut(s) 167, 682
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 448
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 3 cut(s) 77, 203, 492
NdeI CATATG 1 cut(s) 283
NdeII GATC 3 cut(s) 25, 425, 706
NlaIII CATG 6 cut(s) 311, 421, 629, 716, 778, 896
NlaIV GGNNCC 2 cut(s) 496, 837
NsiI ATGCAT 2 cut(s) 199, 627
NspI RCATGY 1 cut(s) 421
OliI CACNNNNGTG 1 cut(s) 761
PagI TCATGA 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 4 cut(s) 19, 173, 313, 778
PkrI GCNGC 2 cut(s) 73, 681
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 503
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 2 cut(s) 496, 837
PspPI GGNCC 1 cut(s) 275
PsrI GAACNNNNNNTAC 2 cut(s) 75, 107
PsuI RGATCY 1 cut(s) 706
PvuII CAGCTG 2 cut(s) 167, 682
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
RseI CAYNNNNRTG 2 cut(s) 603, 761
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 2 cut(s) 615, 660
SatI GCNGC 2 cut(s) 72, 680
Sau3AI GATC 3 cut(s) 25, 425, 706
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 1 cut(s) 155
SfaNI GCATC 2 cut(s) 206, 444
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 603, 761
SmlI CTYRAG 2 cut(s) 75, 154
SmoI CTYRAG 2 cut(s) 75, 154
SsiI CCGC 4 cut(s) 146, 204, 273, 529
SspMI CTAG 3 cut(s) 6, 327, 534
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 503
TaaI ACNGT 1 cut(s) 740
TaiI ACGT 1 cut(s) 484
TaqI TCGA 2 cut(s) 264, 548
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 4 cut(s) 19, 173, 313, 778
Tru1I TTAA 2 cut(s) 615, 660
Tru9I TTAA 2 cut(s) 615, 660
TscAI CASTG 3 cut(s) 21, 186, 763
TseI GCWGC 2 cut(s) 71, 679
TspDTI ATGAA 1 cut(s) 566
TspRI CASTG 3 cut(s) 21, 186, 763
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 4 cut(s) 226, 250, 611, 824
XceI RCATGY 1 cut(s) 421
XspI CTAG 3 cut(s) 6, 327, 534
ZraI GACGTC 1 cut(s) 482
Zsp2I ATGCAT 2 cut(s) 199, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.