Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006537

Physical Location & Seq

Genomic Coordinates Reverse (-)

18197822 .. 18200198

Gene Structure 2377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43945.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGTTCGTCTCTACCTCTGAGGCTACTTCTTCCTCTTACAACTTCTCTGATTTCTCCTCCTCCTCCTCCTCCAGATTCTTTCCATGCTCCTTCGTCGTTCAGATCGAAAAACCCTAATTTCAAACGCCGATTGTCTTCTTCTTCCTGTTGTTCTTCCCAGTCGCAGCTTTTCTCTGGGAGATGCAGATCCTATTCGCGGTGTGTTACCATGTGCTTACCAGAACACATGAGAAATCAAGAGAACACAGAAATCTTGACAGATAAAGATGACCACATTGAATGTGTGCTTGAATCGGATGAAGATTCTGGCCTCAGGATTCCGACTCAAGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCAGAGCTAAAACCCGCTGCTGATGTAGATTACATACAAGAGCTATTGGCGATACAGCAGCAAGGTCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAACTGATTGAGATACTTAGCTACGCCATGGTTATAACCAAAAATCATATATACACATCAGGTGCATCTGGAACTAATGCTGCAGTCATCAGAGGTGCATTGAGAGCAGAGAGACCAGAGCTGCTTACAGTAATTCTACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAAGAACTATTGTCTAAAGTACAAAACGTGGTAGAAAAGCCACATAATGACCATTTGCCATTGTTAGAAGCCAGCAGGTTGTGTAATATGGACATCATATCACAAGTTCAACAAGTGATCTGCTTCGCGTTTCATGACAGTAAGCTTCTTATGGAGACATGTCAAGAAGCCAAAAATCTGCGCAAGATTGTCACTCTCTTCTACCTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.17

Weight (kDa)

6.25

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43945 AT3G59870
fragaria_vesca	FvH4_1g00160 FvH4_1g00160 FvH4_1g00160 FvH4_1g00160
malus_domestica	MD00G1087500.v1.1 MD15G1143300.v1.1
prunus_persica	Prupe.7G269700_v2.0.a1 Prupe.7G269700_v2.0.a1
pyrus_communis	pycom15g12940 pycom290g00220
rosa_chinensis	RchiOBHm_Chr2g0084451
rosa_laevigata	RLG00000015619
rosa_multiflora	Rmu_co8449065.1_g000001 Rmu_sc0009404.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156050
rosa_rugosa	Rorug01G0454100 Rorug01G0454100 Rorug01G0454100 Rorug01G0454100
rosa_samantha	Rh2AG002200 Rh2BG001800 Rh2CG002100 Rh2DG002300
rosa_wichuraiana	Rw2G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
Acc16I	TGCGCA	1 cut(s)	839
Acc36I	ACCTGC	1 cut(s)	723
AccII	CGCG	2 cut(s)	199, 785
AciI	CCGC	2 cut(s)	199, 384
AclWI	GGATC	2 cut(s)	183, 358
AfaI	GTAC	1 cut(s)	678
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	815
AgsI	TTSAA	6 cut(s)	124, 281, 293, 347, 637, 767
AluBI	AGCT	6 cut(s)	169, 376, 412, 507, 607, 802
AluI	AGCT	6 cut(s)	169, 376, 412, 507, 607, 802
Alw26I	GTCTC	3 cut(s)	15, 592, 806
AlwI	GGATC	2 cut(s)	183, 358
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	5 cut(s)	166, 386, 427, 566, 607
AspLEI	GCGC	1 cut(s)	840
AspS9I	GGNCC	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	434
AxyI	CCTNAGG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	5 cut(s)	178, 373, 439, 553, 594
BcoDI	GTCTC	3 cut(s)	15, 592, 806
BfaI	CTAG	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	723
BisI	GCNGC	5 cut(s)	167, 387, 428, 567, 608
BlsI	GCNGC	5 cut(s)	168, 388, 429, 568, 609
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	3 cut(s)	173, 490, 560
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	129
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	160
Bse21I	CCTNAGG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMII	CTCAG	3 cut(s)	11, 328, 642
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	5 cut(s)	48, 51, 54, 57, 60
BseXI	GCAGC	5 cut(s)	178, 373, 439, 553, 594
Bsh1236I	CGCG	2 cut(s)	199, 785
BshFI	GGCC	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	3 cut(s)	15, 592, 806
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	592
Bsp143I	GATC	5 cut(s)	104, 188, 350, 440, 774
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	2 cut(s)	199, 384
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	3 cut(s)	12, 327, 643
BspFNI	CGCG	2 cut(s)	199, 785
BspHI	TCATGA	1 cut(s)	790
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	723
BspPI	GGATC	2 cut(s)	183, 358
BspTNI	GGTCTC	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	5 cut(s)	104, 188, 350, 440, 774
BssT1I	CCWWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	616, 797
Bst6I	CTCTTC	1 cut(s)	860
BstC8I	GCNNGC	1 cut(s)	730
BstDEI	CTNAG	4 cut(s)	20, 314, 503, 651
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	2 cut(s)	199, 785
BstHHI	GCGC	1 cut(s)	840
BstKTI	GATC	5 cut(s)	107, 191, 353, 443, 777
BstMAI	GTCTC	3 cut(s)	15, 592, 806
BstMBI	GATC	5 cut(s)	104, 188, 350, 440, 774
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNSI	RCATGY	1 cut(s)	819
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	2 cut(s)	199, 785
BstV1I	GCAGC	5 cut(s)	178, 373, 439, 553, 594
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	188, 350
BstYI	RGATCY	2 cut(s)	188, 350
Bsu36I	CCTNAGG	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	312
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
BveI	ACCTGC	1 cut(s)	723
Cac8I	GCNNGC	1 cut(s)	730
CciI	TCATGA	1 cut(s)	790
CfoI	GCGC	1 cut(s)	840
Cfr13I	GGNCC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	677
CviAII	CATG	7 cut(s)	86, 211, 229, 478, 514, 791, 816
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	4 cut(s)	20, 314, 503, 651
DpnI	GATC	5 cut(s)	106, 190, 352, 442, 776
DpnII	GATC	5 cut(s)	104, 188, 350, 440, 774
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
Eco130I	CCWWGG	1 cut(s)	513
Eco31I	GGTCTC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	434
Eco81I	CCTNAGG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	7 cut(s)	89, 214, 232, 481, 517, 794, 819
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	7 cut(s)	85, 210, 228, 477, 513, 790, 815
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	167, 387, 428, 567, 608
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	5 cut(s)	167, 387, 428, 567, 608
FspBI	CTAG	1 cut(s)	438
FspI	TGCGCA	1 cut(s)	839
GlaI	GCGC	1 cut(s)	839
GluI	GCNGC	5 cut(s)	167, 387, 428, 567, 608
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	312
HhaI	GCGC	1 cut(s)	840
Hin1II	CATG	7 cut(s)	89, 214, 232, 481, 517, 794, 819
Hin6I	GCGC	1 cut(s)	838
HinP1I	GCGC	1 cut(s)	838
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	5 cut(s)	77, 293, 305, 319, 325
Hpy188I	TCNGA	7 cut(s)	21, 51, 104, 298, 324, 373, 578
Hpy188III	TCNNGA	9 cut(s)	74, 239, 256, 316, 485, 555, 650, 791, 821
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	102, 341
HpyCH4III	ACNGT	2 cut(s)	616, 797
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	6 cut(s)	186, 365, 481, 551, 569, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	4 cut(s)	20, 314, 503, 651
HpySE526I	ACGT	1 cut(s)	684
Hsp92II	CATG	7 cut(s)	89, 214, 232, 481, 517, 794, 819
HspAI	GCGC	1 cut(s)	838
Kzo9I	GATC	5 cut(s)	104, 188, 350, 440, 774
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	5 cut(s)	178, 373, 439, 553, 594
LweI	GCATC	3 cut(s)	173, 490, 560
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	2 cut(s)	205, 847
MalI	GATC	5 cut(s)	106, 190, 352, 442, 776
MboI	GATC	5 cut(s)	104, 188, 350, 440, 774
MboII	GAAGA	7 cut(s)	23, 129, 132, 135, 147, 314, 847
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	2 cut(s)	188, 350
MluCI	AATT	3 cut(s)	118, 444, 618
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	347
Mph1103I	ATGCAT	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	444
MvnI	CGCG	2 cut(s)	199, 785
MwoI	GCNNNNNNNGC	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	5 cut(s)	104, 188, 350, 440, 774
NlaIII	CATG	7 cut(s)	89, 214, 232, 481, 517, 794, 819
NmuCI	GTSAC	1 cut(s)	847
NsbI	TGCGCA	1 cut(s)	839
NsiI	ATGCAT	1 cut(s)	483
NspI	RCATGY	1 cut(s)	819
PagI	TCATGA	1 cut(s)	790
PciI	ACATGT	1 cut(s)	815
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PfeI	GAWTC	4 cut(s)	77, 293, 305, 319
PkrI	GCNGC	5 cut(s)	168, 388, 429, 568, 609
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	434
PscI	ACATGT	1 cut(s)	815
PsiI	TTATAA	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	434
PspPPI	RGGWCCY	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	2 cut(s)	188, 350
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SatI	GCNGC	5 cut(s)	167, 387, 428, 567, 608
Sau3AI	GATC	5 cut(s)	104, 188, 350, 440, 774
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	1 cut(s)	319
SfaNI	GCATC	3 cut(s)	173, 490, 560
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	3 cut(s)	118, 444, 618
SsiI	CCGC	2 cut(s)	199, 384
SspMI	CTAG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	616, 797
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	2 cut(s)	107, 864
TasI	AATT	3 cut(s)	118, 444, 618
TatI	WGTACW	1 cut(s)	676
TfiI	GAWTC	4 cut(s)	77, 293, 305, 319
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	5 cut(s)	166, 386, 427, 566, 607
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	3 cut(s)	315, 466, 779
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	434
XceI	RCATGY	1 cut(s)	819
XspI	CTAG	1 cut(s)	438
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.