Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006537

Physical Location & Seq

Genomic Coordinates Reverse (-)

181336 .. 187284

Gene Structure 5949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G000190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGAAGAGATCAAGATATTGATAATCGATCAACTGAAGACAAGAGTGGCATGAACATGTTTGGTTCCGATGAAGAAATAGGCACCCAAATCCCAACTCAAGCTCAATCTGTTGTTGAAGGATCCGGAGCAGTTATGGTTTCAGAGTTTAGACCTGCAGCTGATGTGGATTATCTACAGGAGTTATTAGCCATTCAGCAACAAGGCCCCAGATCAATTGGCTTTTTTGGGACCCGGAATATGGGATTCATGCATCAAGAACTTATTGAGATACTTAGTTATGCGATGGTTATCACTAAAAATCACATTTATACATCAGGGGCATCTGGTACTAATGCAGCTGTTATCAGGGGTGCTTTAAGAGCAGAGAAACCAGAACTGCTGACTGTAATCTTGCCTCAAAGCTTAAAAAAGCAACCTCCAGAGAGCCAGGAATTATTGTCAAAAGTCAAGAATGTGATAGAGAAGCCTCACAATGATCATCTACCGCTGCTAGAAGCCAGCAGGTTGTGCAATATGGACATCATTTCACATGTACAGCAAGTAATATGCTTTGCGTTCCATGACAGTAAATTGTTAATGGAAACATGTCAAGAGGCAAAAAATCTCCGCAAAATTGTGACGCTGTTCTACCTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.85

Weight (kDa)

5.54

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43945 AT3G59870
fragaria_vesca	FvH4_1g00160 FvH4_1g00160 FvH4_1g00160 FvH4_1g00160
malus_domestica	MD00G1087500.v1.1 MD15G1143300.v1.1
prunus_persica	Prupe.7G269700_v2.0.a1 Prupe.7G269700_v2.0.a1
pyrus_communis	pycom15g12940 pycom290g00220
rosa_chinensis	RchiOBHm_Chr2g0084451
rosa_laevigata	RLG00000015619
rosa_multiflora	Rmu_co8449065.1_g000001 Rmu_sc0009404.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156050
rosa_rugosa	Rorug01G0454100 Rorug01G0454100 Rorug01G0454100 Rorug01G0454100
rosa_samantha	Rh2AG002200 Rh2BG001800 Rh2CG002100 Rh2DG002300
rosa_wichuraiana	Rw2G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	163, 495
AccB1I	GGYRCC	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	2 cut(s)	488, 610
AclWI	GGATC	2 cut(s)	117, 130
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	331, 537
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflIII	ACRYGT	3 cut(s)	57, 532, 587
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	429, 633
AluBI	AGCT	4 cut(s)	104, 161, 341, 405
AluI	AGCT	4 cut(s)	104, 161, 341, 405
AlwI	GGATC	2 cut(s)	117, 130
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	158, 338, 490
AspS9I	GGNCC	2 cut(s)	206, 231
AsuC2I	CCSGG	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	170, 350, 477
BccI	CCATC	1 cut(s)	280
BciT130I	CCWGG	2 cut(s)	431, 635
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	235
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	2 cut(s)	156, 176
BfuAI	ACCTGC	2 cut(s)	163, 495
BisI	GCNGC	3 cut(s)	159, 339, 491
BlsI	GCNGC	3 cut(s)	160, 340, 492
Bme1390I	CCNGG	3 cut(s)	235, 431, 635
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	206, 231
BmiI	GGNNCC	6 cut(s)	67, 85, 124, 208, 232, 233
BmrFI	CCNGG	3 cut(s)	235, 431, 635
BmsI	GCATC	2 cut(s)	262, 332
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	2 cut(s)	431, 635
BseCI	ATCGAT	1 cut(s)	28
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	170, 350, 477
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	126, 235
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	207
Bsp13I	TCCGGA	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	535
Bsp143I	GATC	5 cut(s)	10, 29, 122, 212, 478
BspACI	CCGC	2 cut(s)	488, 610
BspANI	GGCC	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	28
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	6 cut(s)	67, 85, 124, 208, 232, 233
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	2 cut(s)	163, 495
BspPI	GGATC	2 cut(s)	117, 130
BspT107I	GGYRCC	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	535
BssMI	GATC	5 cut(s)	10, 29, 122, 212, 478
Bst2UI	CCWGG	2 cut(s)	431, 635
Bst4CI	ACNGT	2 cut(s)	388, 569
BstAPI	GCANNNNNTGC	1 cut(s)	510
BstAUI	TGTACA	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	1 cut(s)	275
BstKTI	GATC	5 cut(s)	13, 32, 125, 215, 481
BstMBI	GATC	5 cut(s)	10, 29, 122, 212, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 510
BstNI	CCWGG	2 cut(s)	431, 635
BstNSI	RCATGY	3 cut(s)	61, 536, 591
BstSCI	CCNGG	3 cut(s)	233, 429, 633
BstSFI	CTRYAG	2 cut(s)	156, 176
BstV1I	GCAGC	3 cut(s)	170, 350, 477
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
Bsu15I	ATCGAT	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	28
BtgZI	GCGATG	1 cut(s)	299
BveI	ACCTGC	2 cut(s)	163, 495
Cac8I	GCNNGC	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	206, 231
ClaI	ATCGAT	1 cut(s)	28
CseI	GACGC	1 cut(s)	631
Csp6I	GTAC	2 cut(s)	330, 536
CviAII	CATG	6 cut(s)	52, 58, 250, 533, 563, 588
CviQI	GTAC	2 cut(s)	330, 536
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	5 cut(s)	12, 31, 124, 214, 480
DpnII	GATC	5 cut(s)	10, 29, 122, 212, 478
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	57
EcoO109I	RGGNCCY	2 cut(s)	206, 231
EcoRII	CCWGG	2 cut(s)	429, 633
EcoT22I	ATGCAT	1 cut(s)	255
FaeI	CATG	6 cut(s)	55, 61, 253, 536, 566, 591
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	6 cut(s)	51, 57, 249, 532, 562, 587
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	159, 339, 491
Fsp4HI	GCNGC	3 cut(s)	159, 339, 491
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	3 cut(s)	159, 339, 491
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	126, 235
HgaI	GACGC	1 cut(s)	631
Hin1II	CATG	6 cut(s)	55, 61, 253, 536, 566, 591
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	2 cut(s)	126, 235
Hpy188I	TCNGA	2 cut(s)	70, 145
Hpy188III	TCNNGA	6 cut(s)	14, 126, 257, 422, 451, 593
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	388, 569
HpyCH4V	TGCA	4 cut(s)	158, 253, 338, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 510
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	6 cut(s)	55, 61, 253, 536, 566, 591
KflI	GGGWCCC	1 cut(s)	231
Kpn2I	TCCGGA	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	5 cut(s)	10, 29, 122, 212, 478
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	3 cut(s)	170, 350, 477
LweI	GCATC	2 cut(s)	262, 332
MaeI	CTAG	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	5 cut(s)	12, 31, 124, 214, 480
MboI	GATC	5 cut(s)	10, 29, 122, 212, 478
MboII	GAAGA	3 cut(s)	18, 50, 86
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	122
MluCI	AATT	4 cut(s)	216, 434, 572, 615
MnlI	CCTC	4 cut(s)	408, 429, 480, 589
Mph1103I	ATGCAT	1 cut(s)	255
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	4 cut(s)	359, 407, 578, 640
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	3 cut(s)	161, 341, 490
MspI	CCGG	2 cut(s)	126, 235
MspR9I	CCNGG	3 cut(s)	235, 431, 635
MunI	CAATTG	1 cut(s)	216
MvaI	CCWGG	2 cut(s)	431, 635
MwoI	GCNNNNNNNGC	2 cut(s)	362, 510
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	5 cut(s)	10, 29, 122, 212, 478
NlaIII	CATG	6 cut(s)	55, 61, 253, 536, 566, 591
NlaIV	GGNNCC	6 cut(s)	67, 85, 124, 208, 232, 233
NmuCI	GTSAC	1 cut(s)	619
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	3 cut(s)	61, 536, 591
PciI	ACATGT	3 cut(s)	57, 532, 587
PfeI	GAWTC	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	160, 340, 492
PpuMI	RGGWCCY	1 cut(s)	231
PscI	ACATGT	3 cut(s)	57, 532, 587
Psp5II	RGGWCCY	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	429, 633
PspGI	CCWGG	2 cut(s)	429, 633
PspN4I	GGNNCC	6 cut(s)	67, 85, 124, 208, 232, 233
PspPI	GGNCC	2 cut(s)	206, 231
PspPPI	RGGWCCY	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	2 cut(s)	161, 341
RsaI	GTAC	2 cut(s)	331, 537
RsaNI	GTAC	2 cut(s)	330, 536
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	4 cut(s)	359, 407, 578, 640
SatI	GCNGC	3 cut(s)	159, 339, 491
Sau3AI	GATC	5 cut(s)	10, 29, 122, 212, 478
Sau96I	GGNCC	2 cut(s)	206, 231
ScrFI	CCNGG	3 cut(s)	235, 431, 635
SetI	ASST	8 cut(s)	106, 157, 163, 343, 407, 421, 509, 636
SfaNI	GCATC	2 cut(s)	262, 332
SfcI	CTRYAG	2 cut(s)	156, 176
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	4 cut(s)	216, 434, 572, 615
SsiI	CCGC	2 cut(s)	488, 610
SspMI	CTAG	1 cut(s)	494
StyD4I	CCNGG	3 cut(s)	233, 429, 633
TaaI	ACNGT	2 cut(s)	388, 569
TaqI	TCGA	1 cut(s)	28
TasI	AATT	4 cut(s)	216, 434, 572, 615
TatI	WGTACW	1 cut(s)	535
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	4 cut(s)	359, 407, 578, 640
Tru9I	TTAA	4 cut(s)	359, 407, 578, 640
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	3 cut(s)	158, 338, 490
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	3 cut(s)	68, 87, 238
VpaK11BI	GGWCC	1 cut(s)	231
XceI	RCATGY	3 cut(s)	61, 536, 591
XspI	CTAG	1 cut(s)	494
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.