Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006537

Physical Location & Seq

Genomic Coordinates Reverse (-)

164632 .. 169783

Gene Structure 5152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG002300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAGCAGCCCAGCAGTACCTTTGAGGCTTTTCTTGCCTCTAACCCCCACCATTACTCCCCAATATCCATTACACTTACCCTCCTCCTCCAAGTTCCTCAAATCCTTCTCCTCCTCCTCCTCCTCCTCTCTCTCATCTCATCAAACATGTGCCTGGAACACAACCTCATCTCACTCCAAACGCCGCAAGTGGCTTTGCGGACAAATGAGAAGAGATCAAGATATTGATAATCGATCAACTGAAGACAAGAGTGGCATGAACATGTTTGGTTCCGATGAAGAAATAGGCACCCAAATCCCAACTCAAGCTCAATCTGTTGTTGAAGGATCCGGAGCAGTTATGGTTTCAGAGTTTAGACCTGCAGCTGATGTGGATTATCTACAGGAGTTATTAGCCATTCAGCAACAAGGCCCCAGATCAATTGGCTTTTTTGGGACCCGGAATATGGGATTCATGCATCAAGAACTTATTGAGATACTTAGTTATGCGATGGTTATCACTAAAAATCACATTTATACATCAGGGGCATCTGGTACTAATGCAGCTGTTATCAGGGGTGCTTTAAGAGCAGAGAAACCAGAACTGCTTACTGTAATCTTGCCTCAAAGCTTAAAAAAGCAACCTCCAGAGAGCCAGGAATTATTGTCAAAAGTCAAGAATGTGATAGAGAAGCCTCACAATGATCATCTACCGCTGCTAGAAGCCAGCAGGTTGTGCAATATGGACATCATTTCACATGTACAGCAAGTAATATGCTTTGCGTTCCATGACAGTAAATTGTTAATGGAAACATGTCAAGAGGCAAAAAATCTCCGCAAAATTGTGACGCTGTTCTACCTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

31.34

Weight (kDa)

7.71

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43945 AT3G59870
fragaria_vesca	FvH4_1g00160 FvH4_1g00160 FvH4_1g00160 FvH4_1g00160
malus_domestica	MD00G1087500.v1.1 MD15G1143300.v1.1
prunus_persica	Prupe.7G269700_v2.0.a1 Prupe.7G269700_v2.0.a1
pyrus_communis	pycom15g12940 pycom290g00220
rosa_chinensis	RchiOBHm_Chr2g0084451
rosa_laevigata	RLG00000015619
rosa_multiflora	Rmu_co8449065.1_g000001 Rmu_sc0009404.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156050
rosa_rugosa	Rorug01G0454100 Rorug01G0454100 Rorug01G0454100 Rorug01G0454100
rosa_samantha	Rh2AG002200 Rh2BG001800 Rh2CG002100 Rh2DG002300
rosa_wichuraiana	Rw2G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	367, 699
AccB1I	GGYRCC	1 cut(s)	287
AccIII	TCCGGA	1 cut(s)	329
AciI	CCGC	4 cut(s)	184, 198, 692, 814
AclWI	GGATC	2 cut(s)	321, 334
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	3 cut(s)	18, 535, 741
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	4 cut(s)	146, 261, 736, 791
AgsI	TTSAA	1 cut(s)	323
AjnI	CCWGG	3 cut(s)	152, 633, 837
AluBI	AGCT	4 cut(s)	308, 365, 545, 609
AluI	AGCT	4 cut(s)	308, 365, 545, 609
AlwI	GGATC	2 cut(s)	321, 334
Aor13HI	TCCGGA	1 cut(s)	329
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	4 cut(s)	6, 362, 542, 694
AspS9I	GGNCC	2 cut(s)	410, 435
AsuC2I	CCSGG	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	4 cut(s)	18, 374, 554, 681
BccI	CCATC	1 cut(s)	484
BciT130I	CCWGG	3 cut(s)	154, 635, 839
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	439
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	2 cut(s)	360, 380
BfuAI	ACCTGC	2 cut(s)	367, 699
BisI	GCNGC	5 cut(s)	7, 184, 363, 543, 695
BlsI	GCNGC	5 cut(s)	8, 185, 364, 544, 696
Bme1390I	CCNGG	4 cut(s)	154, 439, 635, 839
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	410, 435
BmiI	GGNNCC	6 cut(s)	271, 289, 328, 412, 436, 437
BmrFI	CCNGG	4 cut(s)	154, 439, 635, 839
BmsI	GCATC	2 cut(s)	466, 536
BpiI	GAAGAC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	494
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 65, 70, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	494
BseAI	TCCGGA	1 cut(s)	329
BseBI	CCWGG	3 cut(s)	154, 635, 839
BseCI	ATCGAT	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	494
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseRI	GAGGAG	8 cut(s)	73, 76, 100, 103, 106, 109, 112, 115
BseXI	GCAGC	4 cut(s)	18, 374, 554, 681
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	1 cut(s)	411
BshNI	GGYRCC	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	330, 439
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	411
Bsp13I	TCCGGA	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	739
Bsp143I	GATC	5 cut(s)	214, 233, 326, 416, 682
BspACI	CCGC	4 cut(s)	184, 198, 692, 814
BspANI	GGCC	1 cut(s)	411
BspDI	ATCGAT	1 cut(s)	232
BspEI	TCCGGA	1 cut(s)	329
BspLI	GGNNCC	6 cut(s)	271, 289, 328, 412, 436, 437
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	2 cut(s)	367, 699
BspPI	GGATC	2 cut(s)	321, 334
BspT107I	GGYRCC	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	739
BssMI	GATC	5 cut(s)	214, 233, 326, 416, 682
Bst2UI	CCWGG	3 cut(s)	154, 635, 839
Bst4CI	ACNGT	2 cut(s)	592, 773
Bst6I	CTCTTC	1 cut(s)	205
BstAPI	GCANNNNNTGC	1 cut(s)	714
BstAUI	TGTACA	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	1 cut(s)	479
BstKTI	GATC	5 cut(s)	217, 236, 329, 419, 685
BstMBI	GATC	5 cut(s)	214, 233, 326, 416, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 566, 714
BstNI	CCWGG	3 cut(s)	154, 635, 839
BstNSI	RCATGY	4 cut(s)	150, 265, 740, 795
BstSCI	CCNGG	4 cut(s)	152, 437, 633, 837
BstSFI	CTRYAG	2 cut(s)	360, 380
BstV1I	GCAGC	4 cut(s)	18, 374, 554, 681
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
Bsu15I	ATCGAT	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	411
BsuTUI	ATCGAT	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	503
BveI	ACCTGC	2 cut(s)	367, 699
Cac8I	GCNNGC	1 cut(s)	706
Cfr13I	GGNCC	2 cut(s)	410, 435
ClaI	ATCGAT	1 cut(s)	232
CseI	GACGC	1 cut(s)	835
Csp6I	GTAC	3 cut(s)	17, 534, 740
CviAII	CATG	7 cut(s)	147, 256, 262, 454, 737, 767, 792
CviQI	GTAC	3 cut(s)	17, 534, 740
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	5 cut(s)	216, 235, 328, 418, 684
DpnII	GATC	5 cut(s)	214, 233, 326, 416, 682
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	2 cut(s)	410, 435
EcoRII	CCWGG	3 cut(s)	152, 633, 837
EcoT22I	ATGCAT	1 cut(s)	459
FaeI	CATG	7 cut(s)	150, 259, 265, 457, 740, 770, 795
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	7 cut(s)	146, 255, 261, 453, 736, 766, 791
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	5 cut(s)	7, 184, 363, 543, 695
Fsp4HI	GCNGC	5 cut(s)	7, 184, 363, 543, 695
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	5 cut(s)	7, 184, 363, 543, 695
GsaI	CCCAGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	2 cut(s)	330, 439
HgaI	GACGC	1 cut(s)	835
Hin1II	CATG	7 cut(s)	150, 259, 265, 457, 740, 770, 795
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	1 cut(s)	450
HpaII	CCGG	2 cut(s)	330, 439
Hpy188I	TCNGA	2 cut(s)	274, 349
Hpy188III	TCNNGA	6 cut(s)	218, 330, 461, 626, 655, 797
HpyAV	CCTTC	2 cut(s)	115, 317
HpyCH4III	ACNGT	2 cut(s)	592, 773
HpyCH4V	TGCA	4 cut(s)	362, 457, 542, 717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 566, 714
HpyF3I	CTNAG	1 cut(s)	479
Hsp92II	CATG	7 cut(s)	150, 259, 265, 457, 740, 770, 795
KflI	GGGWCCC	1 cut(s)	435
Kpn2I	TCCGGA	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	214, 233, 326, 416, 682
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	4 cut(s)	18, 374, 554, 681
LweI	GCATC	2 cut(s)	466, 536
MaeI	CTAG	1 cut(s)	698
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	5 cut(s)	216, 235, 328, 418, 684
MboI	GATC	5 cut(s)	214, 233, 326, 416, 682
MboII	GAAGA	3 cut(s)	222, 254, 290
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	326
MluCI	AATT	4 cut(s)	420, 638, 776, 819
Mph1103I	ATGCAT	1 cut(s)	459
MroI	TCCGGA	1 cut(s)	329
MseI	TTAA	4 cut(s)	563, 611, 782, 844
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	3 cut(s)	365, 545, 694
MspI	CCGG	2 cut(s)	330, 439
MspR9I	CCNGG	4 cut(s)	154, 439, 635, 839
MunI	CAATTG	1 cut(s)	420
MvaI	CCWGG	3 cut(s)	154, 635, 839
MwoI	GCNNNNNNNGC	3 cut(s)	34, 566, 714
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	5 cut(s)	214, 233, 326, 416, 682
NlaIII	CATG	7 cut(s)	150, 259, 265, 457, 740, 770, 795
NlaIV	GGNNCC	6 cut(s)	271, 289, 328, 412, 436, 437
NmuCI	GTSAC	1 cut(s)	823
NsiI	ATGCAT	1 cut(s)	459
NspI	RCATGY	4 cut(s)	150, 265, 740, 795
PciI	ACATGT	4 cut(s)	146, 261, 736, 791
PfeI	GAWTC	1 cut(s)	450
PkrI	GCNGC	5 cut(s)	8, 185, 364, 544, 696
PpuMI	RGGWCCY	1 cut(s)	435
PscI	ACATGT	4 cut(s)	146, 261, 736, 791
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	3 cut(s)	152, 633, 837
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	3 cut(s)	152, 633, 837
PspN4I	GGNNCC	6 cut(s)	271, 289, 328, 412, 436, 437
PspPI	GGNCC	2 cut(s)	410, 435
PspPPI	RGGWCCY	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	2 cut(s)	365, 545
RsaI	GTAC	3 cut(s)	18, 535, 741
RsaNI	GTAC	3 cut(s)	17, 534, 740
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	4 cut(s)	563, 611, 782, 844
SatI	GCNGC	5 cut(s)	7, 184, 363, 543, 695
Sau3AI	GATC	5 cut(s)	214, 233, 326, 416, 682
Sau96I	GGNCC	2 cut(s)	410, 435
ScrFI	CCNGG	4 cut(s)	154, 439, 635, 839
SfaNI	GCATC	2 cut(s)	466, 536
SfcI	CTRYAG	2 cut(s)	360, 380
SinI	GGWCC	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	420, 638, 776, 819
SsiI	CCGC	4 cut(s)	184, 198, 692, 814
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	4 cut(s)	152, 437, 633, 837
TaaI	ACNGT	2 cut(s)	592, 773
TaqI	TCGA	1 cut(s)	232
TasI	AATT	4 cut(s)	420, 638, 776, 819
TatI	WGTACW	1 cut(s)	739
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	4 cut(s)	563, 611, 782, 844
Tru9I	TTAA	4 cut(s)	563, 611, 782, 844
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	4 cut(s)	6, 362, 542, 694
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	3 cut(s)	272, 291, 442
VpaK11BI	GGWCC	1 cut(s)	435
XceI	RCATGY	4 cut(s)	150, 265, 740, 795
XspI	CTAG	1 cut(s)	698
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.