Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006537

Physical Location & Seq

Genomic Coordinates Reverse (-)

222545 .. 229970

Gene Structure 7426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAGCAGCCCAGTACCTTTGAGGCTTTTCTTGCCTCTAACCCCCACCATTACTCCCCAATATCCAATACACTTACCCTCCTCCAAGTTCCTCAAATCCTTCTCCTCCTCCTCCTCTCTCTCATCTCACCAAACATGTGCCTGGAACACAACCTCATCTCACTCCAAACGCCGCAAGTGGCTTTGCGGACAAATGAGAAGAGATCAAGATATTGATAATCGATCAACTGAAGACAAGAGTGGCATGAACATGTTTGGTTCCGATGAAGAAATAGGCACCCAAATCCCAACTCAAGCTCAATCTGTTGTTGAAGGATCCGGAGCAGTTATGGTTTCAGAGTTTAGACCTGCAGCTGATGTGGATTATCTACAGGAGTTATTAGCCATTCAGCAACAAGGGCCCAGATCAATTGGCTTTTTTGGGACCCGGAATATGGGATTCATGCATCAAGAACTTATTGAGATACTTAGTTATGCGATGGTTATCACTAAAAATCACATTTATACATCAGGGGCATCTGGTACTAATGCAGCTGTTATCAGGGGTGCTTTAAGAGCAGAGAAACCAGAACTGCTTACTGTAATCTTGCCTCAAAGCTTGAAAAAGCAACCTCCAGAGAGCCAGGAATTATTGTCAAAAGTCAAGAATGTGATAGAGAAGCCTCACAATGATCATCTACCGCTGCTAGAAGCCAGCAGGTTGTGCAATATGGACATTATTTCACATGTACAGCAAGCGATTAAGAGGAACATAAGGGGGCAGAAACACAGGAGGAGTCTCTCAGTTCAAACCCCTTACTTCTTCGTCGACGACGACGTTGCTCCAGCTCATCGTCAATATACTAGTACTACTGCAGCAGCAGCTGTGCATGGAAGCGCTACTCAAAGCAATTACCTCTATATCACACCACCTGCTGTTAATATCCAGCAGATCAATGCTACAACTGATCATCGCCTTCACCACCGACGCCACAAATCTGTTTCTGTAGTTGGTGATCCAGGCTACTCATTTGGAATCGCAGAGGAGCTAGATCAGGGCAGTAATTACTACAATAATAACAATCAGCAGATGACAAAGGTCAATGATCGTCAACGGGCAAAGCAACTTGTCCGGTTTAGGAGCCATAGATCATCGTTGTTCTCATCCTGCATTTCTGGTGCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

43.31

Weight (kDa)

9.44

Isoelectric Point (pI)

62.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43945 AT3G59870
fragaria_vesca	FvH4_1g00160 FvH4_1g00160 FvH4_1g00160 FvH4_1g00160
malus_domestica	MD00G1087500.v1.1 MD15G1143300.v1.1
prunus_persica	Prupe.7G269700_v2.0.a1 Prupe.7G269700_v2.0.a1
pyrus_communis	pycom15g12940 pycom290g00220
rosa_chinensis	RchiOBHm_Chr2g0084451
rosa_laevigata	RLG00000015619
rosa_multiflora	Rmu_co8449065.1_g000001 Rmu_sc0009404.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156050
rosa_rugosa	Rorug01G0454100 Rorug01G0454100 Rorug01G0454100 Rorug01G0454100
rosa_samantha	Rh2AG002200 Rh2BG001800 Rh2CG002100 Rh2DG002300
rosa_wichuraiana	Rw2G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	919
Acc36I	ACCTGC	3 cut(s)	355, 687, 919
AccB1I	GGYRCC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	807
AccIII	TCCGGA	1 cut(s)	317
AciI	CCGC	3 cut(s)	172, 186, 680
AclWI	GGATC	3 cut(s)	309, 322, 989
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	967
AfaI	GTAC	4 cut(s)	15, 523, 729, 847
AfeI	AGCGCT	1 cut(s)	877
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflIII	ACRYGT	3 cut(s)	134, 249, 724
AgsI	TTSAA	3 cut(s)	311, 601, 788
AhlI	ACTAGT	1 cut(s)	842
AjnI	CCWGG	3 cut(s)	140, 621, 997
AluBI	AGCT	7 cut(s)	296, 353, 533, 597, 827, 863, 1027
AluI	AGCT	7 cut(s)	296, 353, 533, 597, 827, 863, 1027
Alw26I	GTCTC	1 cut(s)	782
AlwI	GGATC	3 cut(s)	309, 322, 989
AlwNI	CAGNNNCTG	1 cut(s)	863
Aor13HI	TCCGGA	1 cut(s)	317
Aor51HI	AGCGCT	1 cut(s)	877
AoxI	GGCC	1 cut(s)	398
ApaI	GGGCCC	1 cut(s)	402
ApeKI	GCWGC	7 cut(s)	6, 350, 530, 682, 854, 857, 860
AspLEI	GCGC	1 cut(s)	878
AspS9I	GGNCC	3 cut(s)	398, 399, 423
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	3 cut(s)	119, 950, 1004
AvaII	GGWCC	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	7 cut(s)	18, 362, 542, 669, 866, 869, 872
BccI	CCATC	1 cut(s)	472
BcgI	CGANNNNNNTGC	2 cut(s)	800, 834
BciT130I	CCWGG	3 cut(s)	142, 623, 999
BclI	TGATCA	2 cut(s)	670, 946
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	782
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	4 cut(s)	686, 843, 1028, 1165
BfmI	CTRYAG	4 cut(s)	348, 368, 852, 984
BfoI	RGCGCY	1 cut(s)	879
BfuAI	ACCTGC	3 cut(s)	355, 687, 919
BisI	GCNGC	8 cut(s)	7, 172, 351, 531, 683, 855, 858, 861
BlsI	GCNGC	8 cut(s)	8, 173, 352, 532, 684, 856, 859, 862
BmcAI	AGTACT	1 cut(s)	847
Bme1390I	CCNGG	4 cut(s)	142, 427, 623, 999
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	3 cut(s)	398, 399, 423
BmiI	GGNNCC	7 cut(s)	259, 277, 316, 400, 424, 425, 1121
BmrFI	CCNGG	4 cut(s)	142, 427, 623, 999
BmrI	ACTGGG	1 cut(s)	5
BmsI	GCATC	2 cut(s)	454, 524
BmuI	ACTGGG	1 cut(s)	5
BoxI	GACNNNNGTC	1 cut(s)	1076
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	597, 807
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	967
BsaWI	WCCGGW	2 cut(s)	317, 1110
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 62, 67, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	482
BseAI	TCCGGA	1 cut(s)	317
BseBI	CCWGG	3 cut(s)	142, 623, 999
BseCI	ATCGAT	1 cut(s)	220
BseGI	GGATG	1 cut(s)	1142
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	7 cut(s)	70, 94, 97, 100, 103, 787, 1037
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	7 cut(s)	18, 362, 542, 669, 866, 869, 872
BshFI	GGCC	1 cut(s)	400
BshNI	GGYRCC	1 cut(s)	275
BshVI	ATCGAT	1 cut(s)	220
BsiSI	CCGG	3 cut(s)	318, 427, 1111
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	782
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	400
Bsp120I	GGGCCC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	317
Bsp1407I	TGTACA	1 cut(s)	727
BspACI	CCGC	3 cut(s)	172, 186, 680
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	1 cut(s)	794
BspDI	ATCGAT	1 cut(s)	220
BspEI	TCCGGA	1 cut(s)	317
BspLI	GGNNCC	7 cut(s)	259, 277, 316, 400, 424, 425, 1121
BspMAI	CTGCAG	2 cut(s)	352, 856
BspMI	ACCTGC	3 cut(s)	355, 687, 919
BspPI	GGATC	3 cut(s)	309, 322, 989
BspT107I	GGYRCC	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	11
BssNI	GRCGYC	1 cut(s)	967
Bst2UI	CCWGG	3 cut(s)	142, 623, 999
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	1 cut(s)	193
BstACI	GRCGYC	1 cut(s)	967
BstAPI	GCANNNNNTGC	1 cut(s)	702
BstAUI	TGTACA	1 cut(s)	727
BstC8I	GCNNGC	2 cut(s)	694, 735
BstDEI	CTNAG	2 cut(s)	467, 781
BstF5I	GGATG	1 cut(s)	1142
BstH2I	RGCGCY	1 cut(s)	879
BstHHI	GCGC	1 cut(s)	878
BstMAI	GTCTC	1 cut(s)	782
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 397, 554, 702, 860
BstNI	CCWGG	3 cut(s)	142, 623, 999
BstNSI	RCATGY	3 cut(s)	138, 253, 728
BstPAI	GACNNNNGTC	1 cut(s)	1076
BstSCI	CCNGG	4 cut(s)	140, 425, 621, 997
BstSFI	CTRYAG	4 cut(s)	348, 368, 852, 984
BstSLI	GKGCMC	1 cut(s)	402
BstV1I	GCAGC	7 cut(s)	18, 362, 542, 669, 866, 869, 872
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	400
BsuTUI	ATCGAT	1 cut(s)	220
BtgZI	GCGATG	2 cut(s)	491, 935
BtsCI	GGATG	1 cut(s)	1142
BveI	ACCTGC	3 cut(s)	355, 687, 919
Cac8I	GCNNGC	2 cut(s)	694, 735
CaiI	CAGNNNCTG	1 cut(s)	863
CfoI	GCGC	1 cut(s)	878
Cfr13I	GGNCC	3 cut(s)	398, 399, 423
ClaI	ATCGAT	1 cut(s)	220
CseI	GACGC	1 cut(s)	975
Csp6I	GTAC	4 cut(s)	14, 522, 728, 846
CviAII	CATG	6 cut(s)	135, 244, 250, 442, 725, 869
CviQI	GTAC	4 cut(s)	14, 522, 728, 846
DdeI	CTNAG	2 cut(s)	467, 781
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	423
Eco47III	AGCGCT	1 cut(s)	877
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	2 cut(s)	398, 423
EcoRII	CCWGG	3 cut(s)	140, 621, 997
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	6 cut(s)	138, 247, 253, 445, 728, 872
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	6 cut(s)	134, 243, 249, 441, 724, 868
FbaI	TGATCA	2 cut(s)	670, 946
FblI	GTMKAC	1 cut(s)	807
Fnu4HI	GCNGC	8 cut(s)	7, 172, 351, 531, 683, 855, 858, 861
FokI	GGATG	1 cut(s)	1129
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	8 cut(s)	7, 172, 351, 531, 683, 855, 858, 861
FspBI	CTAG	4 cut(s)	686, 843, 1028, 1165
GlaI	GCGC	1 cut(s)	877
GluI	GCNGC	8 cut(s)	7, 172, 351, 531, 683, 855, 858, 861
GsuI	CTGGAG	2 cut(s)	597, 807
HaeII	RGCGCY	1 cut(s)	879
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	3 cut(s)	318, 427, 1111
HgaI	GACGC	1 cut(s)	975
HhaI	GCGC	1 cut(s)	878
Hin1I	GRCGYC	1 cut(s)	967
Hin1II	CATG	6 cut(s)	138, 247, 253, 445, 728, 872
Hin6I	GCGC	1 cut(s)	876
HinP1I	GCGC	1 cut(s)	876
HincII	GTYRAC	2 cut(s)	808, 1091
HindII	GTYRAC	2 cut(s)	808, 1091
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	3 cut(s)	438, 775, 1014
HpaII	CCGG	3 cut(s)	318, 427, 1111
HphI	GGTGA	3 cut(s)	119, 950, 1004
Hpy166II	GTNNAC	2 cut(s)	808, 1091
Hpy188I	TCNGA	2 cut(s)	262, 337
Hpy188III	TCNNGA	5 cut(s)	206, 318, 449, 614, 643
Hpy8I	GTNNAC	2 cut(s)	808, 1091
Hpy99I	CGWCG	5 cut(s)	809, 812, 815, 818, 969
HpyAV	CCTTC	3 cut(s)	109, 305, 965
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	7 cut(s)	350, 445, 530, 705, 854, 868, 1149
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 397, 554, 702, 860
HpyF3I	CTNAG	2 cut(s)	467, 781
HpySE526I	ACGT	1 cut(s)	816
Hsp92I	GRCGYC	1 cut(s)	967
Hsp92II	CATG	6 cut(s)	138, 247, 253, 445, 728, 872
HspAI	GCGC	1 cut(s)	876
KflI	GGGWCCC	1 cut(s)	423
Kpn2I	TCCGGA	1 cut(s)	317
Ksp22I	TGATCA	2 cut(s)	670, 946
LmnI	GCTCC	4 cut(s)	320, 826, 1024, 1119
Lsp1109I	GCAGC	7 cut(s)	18, 362, 542, 669, 866, 869, 872
LweI	GCATC	2 cut(s)	454, 524
MaeI	CTAG	4 cut(s)	686, 843, 1028, 1165
MaeII	ACGT	1 cut(s)	816
MboII	GAAGA	4 cut(s)	210, 242, 278, 793
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	4 cut(s)	408, 626, 889, 1042
MlyI	GAGTC	1 cut(s)	784
Mph1103I	ATGCAT	1 cut(s)	447
MroI	TCCGGA	1 cut(s)	317
MseI	TTAA	3 cut(s)	551, 741, 918
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	4 cut(s)	353, 533, 682, 863
MspI	CCGG	3 cut(s)	318, 427, 1111
MspR9I	CCNGG	4 cut(s)	142, 427, 623, 999
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	3 cut(s)	142, 623, 999
MwoI	GCNNNNNNNGC	5 cut(s)	31, 397, 554, 702, 860
NciI	CCSGG	1 cut(s)	427
NlaIII	CATG	6 cut(s)	138, 247, 253, 445, 728, 872
NlaIV	GGNNCC	7 cut(s)	259, 277, 316, 400, 424, 425, 1121
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	3 cut(s)	138, 253, 728
PaqCI	CACCTGC	1 cut(s)	919
PciI	ACATGT	3 cut(s)	134, 249, 724
PcsI	WCGNNNNNNNCGW	2 cut(s)	810, 813
PfeI	GAWTC	2 cut(s)	438, 1014
PkrI	GCNGC	8 cut(s)	8, 173, 352, 532, 684, 856, 859, 862
PleI	GAGTC	1 cut(s)	783
PpsI	GAGTC	1 cut(s)	783
PpuMI	RGGWCCY	1 cut(s)	423
PscI	ACATGT	3 cut(s)	134, 249, 724
PshAI	GACNNNNGTC	1 cut(s)	1076
Psp5II	RGGWCCY	1 cut(s)	423
Psp6I	CCWGG	3 cut(s)	140, 621, 997
PspGI	CCWGG	3 cut(s)	140, 621, 997
PspN4I	GGNNCC	7 cut(s)	259, 277, 316, 400, 424, 425, 1121
PspOMI	GGGCCC	1 cut(s)	398
PspPI	GGNCC	3 cut(s)	398, 399, 423
PspPPI	RGGWCCY	1 cut(s)	423
PstI	CTGCAG	2 cut(s)	352, 856
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	1 cut(s)	314
PvuII	CAGCTG	3 cut(s)	353, 533, 863
RsaI	GTAC	4 cut(s)	15, 523, 729, 847
RsaNI	GTAC	4 cut(s)	14, 522, 728, 846
RseI	CAYNNNNRTG	1 cut(s)	248
SalI	GTCGAC	1 cut(s)	806
SaqAI	TTAA	3 cut(s)	551, 741, 918
SatI	GCNGC	8 cut(s)	7, 172, 351, 531, 683, 855, 858, 861
Sau96I	GGNCC	3 cut(s)	398, 399, 423
ScaI	AGTACT	1 cut(s)	847
SchI	GAGTC	1 cut(s)	784
ScrFI	CCNGG	4 cut(s)	142, 427, 623, 999
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	2 cut(s)	454, 524
SfcI	CTRYAG	4 cut(s)	348, 368, 852, 984
SgrDI	CGTCGACG	1 cut(s)	806
SinI	GGWCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
SpeI	ACTAGT	1 cut(s)	842
Sse9I	AATT	4 cut(s)	408, 626, 889, 1042
SsiI	CCGC	3 cut(s)	172, 186, 680
SspMI	CTAG	4 cut(s)	686, 843, 1028, 1165
StyD4I	CCNGG	4 cut(s)	140, 425, 621, 997
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	2 cut(s)	220, 807
TasI	AATT	4 cut(s)	408, 626, 889, 1042
TatI	WGTACW	2 cut(s)	727, 845
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	438, 1014
Tru1I	TTAA	3 cut(s)	551, 741, 918
Tru9I	TTAA	3 cut(s)	551, 741, 918
TseI	GCWGC	7 cut(s)	6, 350, 530, 682, 854, 857, 860
TspDTI	ATGAA	3 cut(s)	260, 279, 430
VpaK11BI	GGWCC	1 cut(s)	423
XceI	RCATGY	3 cut(s)	138, 253, 728
XmiI	GTMKAC	1 cut(s)	807
XspI	CTAG	4 cut(s)	686, 843, 1028, 1165
ZrmI	AGTACT	1 cut(s)	847
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.