Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006537

Physical Location & Seq

Genomic Coordinates Forward (+)

10582750 .. 10586007

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1143300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGGAGAGATTGTGAAAAGCGCAGAGAGATAGAAGCAGAAGCAAGCAGCAGCTGCCCCCCAAAGCAGAAGCTGAAAGAAAAGCGAGGAATGACAACACCCTTGCATTTGAGGCTCTTCCTGCCTCTCACCTCCATTACTCCCTATTCTTCTTCTTCTTCTTCCTCCTCAGACTTCCCCTGCAAGTCCTTCAAATCCTTTCACTCTGCAAGCCCTAATTTCAACCTTTCTTCCCTCTCATCTCACAACCACACATGTGCTCGAAACAAGACATCCACTCGCTCCAAACCCAAGTGGCTTTGCGGACACTTGAGAAGAGATCAAGACATAGGTAGTCGATCAAATGAAGACGCGAGCGCGACTGGTGCGAGTATGTTTGGTTCGGATGAAGAAGGAGGTACCCAAATCCCAACCCAGGCTCAATCTGTTGTCGAAGGATCGGGGGCAGTTATGGTTTCAGAGTATAGACCTGTGGACGATGTGGATTATCTCCAGGAGTTATTAGCCATTCAGCAACAAGGGCCCAGAGCCATTGGTTTCTTTGGGACCCGGAATATGGGATTCATGCATCAAGAACTTGTTGAGATTCTCAGCTATGCGATGGTGATCACTAAAAATCACATATATACATCAGGGGCATCCGGCACTAATGCAGCTGTCATCAGGGGTGCTTTAAGAGCAGAGAAACCAGAGCTGCTTACCGTAATCTTGCCCCAGAGCTTGAAGAAGCAACCACCTGAGAGCCAGGAATTATTGTCAAAAGTCAAGAATGTGATAGAAAAGCCTCAAAATGATCATCTACCACTGATAGAAGCGAGCAGGTTGTGCAACATGAACATCATTTCACATGTACAGCAAGTTATATGCTTTGCGTTTCACGACAGTAGATTGCTCATGGAAACTTGTCAAGAGGCCAAAAATCTCCGCAAAATTGTGACTCTCTTCTACCTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

35.39

Weight (kDa)

8.72

Isoelectric Point (pI)

61.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43945 AT3G59870
fragaria_vesca	FvH4_1g00160 FvH4_1g00160 FvH4_1g00160 FvH4_1g00160
malus_domestica	MD00G1087500.v1.1 MD15G1143300.v1.1
prunus_persica	Prupe.7G269700_v2.0.a1 Prupe.7G269700_v2.0.a1
pyrus_communis	pycom15g12940 pycom290g00220
rosa_chinensis	RchiOBHm_Chr2g0084451
rosa_laevigata	RLG00000015619
rosa_multiflora	Rmu_co8449065.1_g000001 Rmu_sc0009404.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156050
rosa_rugosa	Rorug01G0454100 Rorug01G0454100 Rorug01G0454100 Rorug01G0454100
rosa_samantha	Rh2AG002200 Rh2BG001800 Rh2CG002100 Rh2DG002300
rosa_wichuraiana	Rw2G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	810
Acc65I	GGTACC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	398
AccII	CGCG	2 cut(s)	353, 359
AciI	CCGC	2 cut(s)	303, 925
AclWI	GGATC	1 cut(s)	445
AfaI	GTAC	2 cut(s)	400, 852
AfiI	CCNNNNNNNGG	2 cut(s)	415, 556
AflIII	ACRYGT	2 cut(s)	254, 847
AgsI	TTSAA	3 cut(s)	193, 223, 724
AjnI	CCWGG	4 cut(s)	414, 492, 744, 948
AleI	CACNNNNGTG	1 cut(s)	255
AluBI	AGCT	6 cut(s)	54, 73, 594, 656, 694, 720
AluI	AGCT	6 cut(s)	54, 73, 594, 656, 694, 720
Alw21I	GWGCWC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	445
AlwNI	CAGNNNCTG	2 cut(s)	54, 73
AoxI	GGCC	2 cut(s)	521, 912
ApaI	GGGCCC	1 cut(s)	525
ApeKI	GCWGC	5 cut(s)	48, 51, 54, 653, 694
Asp718I	GGTACC	1 cut(s)	398
AspLEI	GCGC	2 cut(s)	24, 359
AspS9I	GGNCC	3 cut(s)	521, 522, 546
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	2 cut(s)	121, 616
AvaII	GGWCC	1 cut(s)	546
BaeGI	GKGCMC	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	5 cut(s)	41, 60, 63, 665, 681
BccI	CCATC	1 cut(s)	595
BciT130I	CCWGG	4 cut(s)	416, 494, 746, 950
BclI	TGATCA	2 cut(s)	606, 793
BcnI	CCSGG	1 cut(s)	550
BfuAI	ACCTGC	1 cut(s)	810
BisI	GCNGC	5 cut(s)	49, 52, 55, 654, 695
BlsI	GCNGC	5 cut(s)	50, 53, 56, 655, 696
Bme1390I	CCNGG	5 cut(s)	416, 494, 550, 746, 950
Bme18I	GGWCC	1 cut(s)	546
BmgT120I	GGNCC	3 cut(s)	521, 522, 546
BmiI	GGNNCC	4 cut(s)	400, 523, 547, 548
BmrFI	CCNGG	5 cut(s)	416, 494, 550, 746, 950
BmsI	GCATC	2 cut(s)	577, 647
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	605
BsaJI	CCNNGG	1 cut(s)	414
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 556
Bse1I	ACTGG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	605
BseBI	CCWGG	4 cut(s)	416, 494, 746, 950
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	3 cut(s)	272, 391, 638
BseJI	GATNNNNATC	1 cut(s)	605
BseLI	CCNNNNNNNGG	2 cut(s)	415, 556
BseMII	CTCAG	3 cut(s)	183, 604, 729
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	2 cut(s)	19, 157
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	5 cut(s)	41, 60, 63, 665, 681
Bsh1236I	CGCG	2 cut(s)	353, 359
BshFI	GGCC	2 cut(s)	523, 914
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	550, 642
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	2 cut(s)	415, 556
BsmFI	GGGAC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	523, 914
Bsp120I	GGGCCC	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	262, 525
Bsp1407I	TGTACA	1 cut(s)	850
Bsp143I	GATC	5 cut(s)	319, 338, 437, 606, 793
BspACI	CCGC	2 cut(s)	303, 925
BspANI	GGCC	2 cut(s)	523, 914
BspCNI	CTCAG	3 cut(s)	182, 603, 730
BspFNI	CGCG	2 cut(s)	353, 359
BspLI	GGNNCC	4 cut(s)	400, 523, 547, 548
BspMI	ACCTGC	1 cut(s)	810
BspPI	GGATC	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	5 cut(s)	319, 338, 437, 606, 793
Bst2UI	CCWGG	4 cut(s)	416, 494, 746, 950
Bst4CI	ACNGT	2 cut(s)	703, 884
Bst6I	CTCTTC	3 cut(s)	122, 310, 947
BstAPI	GCANNNNNTGC	2 cut(s)	54, 825
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	4 cut(s)	46, 211, 355, 817
BstDEI	CTNAG	3 cut(s)	169, 590, 738
BstF5I	GGATG	3 cut(s)	272, 391, 638
BstFNI	CGCG	2 cut(s)	353, 359
BstHHI	GCGC	2 cut(s)	24, 359
BstKTI	GATC	5 cut(s)	322, 341, 440, 609, 796
BstMBI	GATC	5 cut(s)	319, 338, 437, 606, 793
BstMWI	GCNNNNNNNGC	7 cut(s)	54, 112, 121, 365, 520, 677, 825
BstNI	CCWGG	4 cut(s)	416, 494, 746, 950
BstNSI	RCATGY	2 cut(s)	258, 851
BstSCI	CCNGG	5 cut(s)	414, 492, 548, 744, 948
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	2 cut(s)	353, 359
BstV1I	GCAGC	5 cut(s)	41, 60, 63, 665, 681
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	523, 914
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	3 cut(s)	272, 391, 638
BtsIMutI	CAGTG	1 cut(s)	803
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	4 cut(s)	46, 211, 355, 817
CaiI	CAGNNNCTG	2 cut(s)	54, 73
CfoI	GCGC	2 cut(s)	24, 359
Cfr13I	GGNCC	3 cut(s)	521, 522, 546
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	399, 851
CviAII	CATG	5 cut(s)	255, 565, 832, 848, 895
CviQI	GTAC	2 cut(s)	399, 851
DdeI	CTNAG	3 cut(s)	169, 590, 738
DpnI	GATC	5 cut(s)	321, 340, 439, 608, 795
DpnII	GATC	5 cut(s)	319, 338, 437, 606, 793
Eam1104I	CTCTTC	3 cut(s)	122, 310, 947
EarI	CTCTTC	3 cut(s)	122, 310, 947
Eco24I	GRGCYC	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	546
EcoO109I	RGGNCCY	2 cut(s)	521, 546
EcoRII	CCWGG	4 cut(s)	414, 492, 744, 948
EcoT22I	ATGCAT	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	525
FaeI	CATG	5 cut(s)	258, 568, 835, 851, 898
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	5 cut(s)	254, 564, 831, 847, 894
FbaI	TGATCA	2 cut(s)	606, 793
Fnu4HI	GCNGC	5 cut(s)	49, 52, 55, 654, 695
FokI	GGATG	3 cut(s)	259, 398, 625
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	5 cut(s)	49, 52, 55, 654, 695
GlaI	GCGC	2 cut(s)	23, 358
GluI	GCNGC	5 cut(s)	49, 52, 55, 654, 695
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	523, 914
HapII	CCGG	2 cut(s)	550, 642
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	2 cut(s)	24, 359
Hin1II	CATG	5 cut(s)	258, 568, 835, 851, 898
Hin6I	GCGC	2 cut(s)	22, 357
HinP1I	GCGC	2 cut(s)	22, 357
HinfI	GANTC	3 cut(s)	561, 586, 937
HpaII	CCGG	2 cut(s)	550, 642
HphI	GGTGA	2 cut(s)	121, 616
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	3 cut(s)	172, 385, 460
Hpy188III	TCNNGA	5 cut(s)	323, 572, 766, 878, 908
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	3 cut(s)	199, 386, 428
HpyCH4III	ACNGT	2 cut(s)	703, 884
HpyCH4V	TGCA	6 cut(s)	106, 183, 209, 568, 653, 828
HpyF10VI	GCNNNNNNNGC	7 cut(s)	54, 112, 121, 365, 520, 677, 825
HpyF3I	CTNAG	3 cut(s)	169, 590, 738
Hsp92II	CATG	5 cut(s)	258, 568, 835, 851, 898
HspAI	GCGC	2 cut(s)	22, 357
KflI	GGGWCCC	1 cut(s)	546
KpnI	GGTACC	1 cut(s)	402
Ksp22I	TGATCA	2 cut(s)	606, 793
Kzo9I	GATC	5 cut(s)	319, 338, 437, 606, 793
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	5 cut(s)	41, 60, 63, 665, 681
LweI	GCATC	2 cut(s)	577, 647
MaeIII	GTNAC	1 cut(s)	934
MalI	GATC	5 cut(s)	321, 340, 439, 608, 795
MboI	GATC	5 cut(s)	319, 338, 437, 606, 793
MhlI	GDGCHC	2 cut(s)	262, 525
MluCI	AATT	3 cut(s)	217, 749, 930
MlyI	GAGTC	1 cut(s)	931
Mph1103I	ATGCAT	1 cut(s)	570
MseI	TTAA	2 cut(s)	674, 955
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	54, 656
MspI	CCGG	2 cut(s)	550, 642
MspR9I	CCNGG	5 cut(s)	416, 494, 550, 746, 950
MvaI	CCWGG	4 cut(s)	416, 494, 746, 950
MvnI	CGCG	2 cut(s)	353, 359
MwoI	GCNNNNNNNGC	7 cut(s)	54, 112, 121, 365, 520, 677, 825
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	5 cut(s)	319, 338, 437, 606, 793
NlaIII	CATG	5 cut(s)	258, 568, 835, 851, 898
NlaIV	GGNNCC	4 cut(s)	400, 523, 547, 548
NmuCI	GTSAC	1 cut(s)	934
NsiI	ATGCAT	1 cut(s)	570
NspI	RCATGY	2 cut(s)	258, 851
OliI	CACNNNNGTG	1 cut(s)	255
PciI	ACATGT	2 cut(s)	254, 847
PciSI	GCTCTTC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	561, 586
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	5 cut(s)	50, 53, 56, 655, 696
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
PpuMI	RGGWCCY	1 cut(s)	546
PscI	ACATGT	2 cut(s)	254, 847
Psp5II	RGGWCCY	1 cut(s)	546
Psp6I	CCWGG	4 cut(s)	414, 492, 744, 948
PspGI	CCWGG	4 cut(s)	414, 492, 744, 948
PspN4I	GGNNCC	4 cut(s)	400, 523, 547, 548
PspOMI	GGGCCC	1 cut(s)	521
PspPI	GGNCC	3 cut(s)	521, 522, 546
PspPPI	RGGWCCY	1 cut(s)	546
PsrI	GAACNNNNNNTAC	2 cut(s)	364, 396
PstNI	CAGNNNCTG	2 cut(s)	54, 73
PvuII	CAGCTG	2 cut(s)	54, 656
RsaI	GTAC	2 cut(s)	400, 852
RsaNI	GTAC	2 cut(s)	399, 851
RseI	CAYNNNNRTG	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	674, 955
SatI	GCNGC	5 cut(s)	49, 52, 55, 654, 695
Sau3AI	GATC	5 cut(s)	319, 338, 437, 606, 793
Sau96I	GGNCC	3 cut(s)	521, 522, 546
SchI	GAGTC	1 cut(s)	931
ScrFI	CCNGG	5 cut(s)	416, 494, 550, 746, 950
SduI	GDGCHC	2 cut(s)	262, 525
SfaNI	GCATC	2 cut(s)	577, 647
SinI	GGWCC	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	217, 749, 930
SsiI	CCGC	2 cut(s)	303, 925
StyD4I	CCNGG	5 cut(s)	414, 492, 548, 744, 948
TaaI	ACNGT	2 cut(s)	703, 884
TaqI	TCGA	3 cut(s)	262, 337, 432
TasI	AATT	3 cut(s)	217, 749, 930
TatI	WGTACW	1 cut(s)	850
TfiI	GAWTC	2 cut(s)	561, 586
Tru1I	TTAA	2 cut(s)	674, 955
Tru9I	TTAA	2 cut(s)	674, 955
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	1 cut(s)	934
TseI	GCWGC	5 cut(s)	48, 51, 54, 653, 694
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	4 cut(s)	360, 402, 553, 848
TspRI	CASTG	1 cut(s)	810
VpaK11BI	GGWCC	1 cut(s)	546
XceI	RCATGY	2 cut(s)	258, 851
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.