Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006537

Physical Location & Seq

Genomic Coordinates Reverse (-)

193960 .. 199935

Gene Structure 5976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG002200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGAAGAGATCAAGATATTGATAATCGATCAACTGAAGACAAGAGTGGCATGAACATGTTTGGTTCCGATGAAGAAATAGGCACCCAAATCCCAACTCAAGCTCAATCTGTTGTTGAAGGATCCGGAGCAGTTATGGTTTCAGAGTTTAGACCTGCAGCTGATGTGGATTATCTACAGGAGTTATTAGCCATTCAGCAACAAGGCCCCAGATCAATTGGCTTTTTTGGGACCCGGAATATGGGATTCATGCATCAAGAACTTATTGAGATACTTAGTTATGCGATGGTTATCACTAAAAATCACATTTATACATCAGGGGCATCTGGTACTAATGCAGCTGTTATCAGGGGTGCTTTAAGAGCAGAGAAACCAGAACTGCTTACTGTAATCTTGCCTCAAAGCTTAAAAAAGCAACCTCCAGAGAGCCAGGAATTATTGTCAAAAGTCAAGAATGTGATAGAGAAGCCTCACAATGATCATCTACCGCTGCTAGAAGCCAGCAGGTTGATAGTAGCTCCACTTTTATATCTCTATTTATTTTTTAATATTTCAGTTTCCCTTTGTTTCCAGTGTTATATAGCTAAACATCCATATGTTGTTGCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.6

Weight (kDa)

5.73

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43945 AT3G59870
fragaria_vesca	FvH4_1g00160 FvH4_1g00160 FvH4_1g00160 FvH4_1g00160
malus_domestica	MD00G1087500.v1.1 MD15G1143300.v1.1
prunus_persica	Prupe.7G269700_v2.0.a1 Prupe.7G269700_v2.0.a1
pyrus_communis	pycom15g12940 pycom290g00220
rosa_chinensis	RchiOBHm_Chr2g0084451
rosa_laevigata	RLG00000015619
rosa_multiflora	Rmu_co8449065.1_g000001 Rmu_sc0009404.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156050
rosa_rugosa	Rorug01G0454100 Rorug01G0454100 Rorug01G0454100 Rorug01G0454100
rosa_samantha	Rh2AG002200 Rh2BG001800 Rh2CG002100 Rh2DG002300
rosa_wichuraiana	Rw2G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	163, 495
AccB1I	GGYRCC	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	1 cut(s)	488
AclWI	GGATC	2 cut(s)	117, 130
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	6 cut(s)	104, 161, 341, 405, 518, 584
AluI	AGCT	6 cut(s)	104, 161, 341, 405, 518, 584
AlwI	GGATC	2 cut(s)	117, 130
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	158, 338, 490
AspS9I	GGNCC	2 cut(s)	206, 231
AsuC2I	CCSGG	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	170, 350, 477
BccI	CCATC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	431
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	235
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	2 cut(s)	156, 176
BfuAI	ACCTGC	2 cut(s)	163, 495
BisI	GCNGC	3 cut(s)	159, 339, 491
BlsI	GCNGC	3 cut(s)	160, 340, 492
Bme1390I	CCNGG	2 cut(s)	235, 431
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	206, 231
BmiI	GGNNCC	6 cut(s)	67, 85, 124, 208, 232, 233
BmrFI	CCNGG	2 cut(s)	235, 431
BmsI	GCATC	2 cut(s)	262, 332
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	571
Bse8I	GATNNNNATC	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	431
BseCI	ATCGAT	1 cut(s)	28
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	571
BseXI	GCAGC	3 cut(s)	170, 350, 477
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	126, 235
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	207
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	10, 29, 122, 212, 478
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	28
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	6 cut(s)	67, 85, 124, 208, 232, 233
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	2 cut(s)	163, 495
BspPI	GGATC	2 cut(s)	117, 130
BspT107I	GGYRCC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	571
BssMI	GATC	5 cut(s)	10, 29, 122, 212, 478
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	502, 607
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	5 cut(s)	13, 32, 125, 215, 481
BstMBI	GATC	5 cut(s)	10, 29, 122, 212, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	2 cut(s)	61, 609
BstSCI	CCNGG	2 cut(s)	233, 429
BstSFI	CTRYAG	2 cut(s)	156, 176
BstV1I	GCAGC	3 cut(s)	170, 350, 477
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
Bsu15I	ATCGAT	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	28
BtgZI	GCGATG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	578
BveI	ACCTGC	2 cut(s)	163, 495
Cac8I	GCNNGC	2 cut(s)	502, 607
Cfr13I	GGNCC	2 cut(s)	206, 231
ClaI	ATCGAT	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	4 cut(s)	52, 58, 250, 606
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	5 cut(s)	12, 31, 124, 214, 480
DpnII	GATC	5 cut(s)	10, 29, 122, 212, 478
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	57
EcoO109I	RGGNCCY	2 cut(s)	206, 231
EcoRII	CCWGG	1 cut(s)	429
EcoT22I	ATGCAT	1 cut(s)	255
FaeI	CATG	4 cut(s)	55, 61, 253, 609
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	4 cut(s)	51, 57, 249, 605
FauNDI	CATATG	1 cut(s)	595
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	159, 339, 491
FokI	GGATG	1 cut(s)	576
Fsp4HI	GCNGC	3 cut(s)	159, 339, 491
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	3 cut(s)	159, 339, 491
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	126, 235
Hin1II	CATG	4 cut(s)	55, 61, 253, 609
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	2 cut(s)	126, 235
Hpy188I	TCNGA	2 cut(s)	70, 145
Hpy188III	TCNNGA	5 cut(s)	14, 126, 257, 422, 451
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4V	TGCA	4 cut(s)	158, 253, 338, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	55, 61, 253, 609
KflI	GGGWCCC	1 cut(s)	231
Kpn2I	TCCGGA	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	5 cut(s)	10, 29, 122, 212, 478
LmnI	GCTCC	2 cut(s)	128, 523
Lsp1109I	GCAGC	3 cut(s)	170, 350, 477
LweI	GCATC	2 cut(s)	262, 332
MaeI	CTAG	1 cut(s)	494
MalI	GATC	5 cut(s)	12, 31, 124, 214, 480
MboI	GATC	5 cut(s)	10, 29, 122, 212, 478
MboII	GAAGA	3 cut(s)	18, 50, 86
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	122
MluCI	AATT	2 cut(s)	216, 434
MnlI	CCTC	3 cut(s)	408, 429, 480
Mph1103I	ATGCAT	1 cut(s)	255
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	3 cut(s)	359, 407, 546
MslI	CAYNNNNRTG	2 cut(s)	56, 594
MspA1I	CMGCKG	3 cut(s)	161, 341, 490
MspI	CCGG	2 cut(s)	126, 235
MspR9I	CCNGG	2 cut(s)	235, 431
MunI	CAATTG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	362
NciI	CCSGG	1 cut(s)	235
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	5 cut(s)	10, 29, 122, 212, 478
NlaIII	CATG	4 cut(s)	55, 61, 253, 609
NlaIV	GGNNCC	6 cut(s)	67, 85, 124, 208, 232, 233
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	2 cut(s)	61, 609
PaeI	GCATGC	1 cut(s)	609
PciI	ACATGT	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	160, 340, 492
PpuMI	RGGWCCY	1 cut(s)	231
PscI	ACATGT	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	6 cut(s)	67, 85, 124, 208, 232, 233
PspPI	GGNCC	2 cut(s)	206, 231
PspPPI	RGGWCCY	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	2 cut(s)	161, 341
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	2 cut(s)	56, 594
SaqAI	TTAA	3 cut(s)	359, 407, 546
SatI	GCNGC	3 cut(s)	159, 339, 491
Sau3AI	GATC	5 cut(s)	10, 29, 122, 212, 478
Sau96I	GGNCC	2 cut(s)	206, 231
ScrFI	CCNGG	2 cut(s)	235, 431
SetI	ASST	9 cut(s)	106, 157, 163, 343, 407, 421, 509, 520, 586
SfaNI	GCATC	2 cut(s)	262, 332
SfcI	CTRYAG	2 cut(s)	156, 176
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	56, 594
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
SphI	GCATGC	1 cut(s)	609
Sse9I	AATT	2 cut(s)	216, 434
SsiI	CCGC	1 cut(s)	488
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	1 cut(s)	494
StyD4I	CCNGG	2 cut(s)	233, 429
TaaI	ACNGT	1 cut(s)	388
TaqI	TCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	216, 434
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	3 cut(s)	359, 407, 546
Tru9I	TTAA	3 cut(s)	359, 407, 546
TscAI	CASTG	1 cut(s)	578
TseI	GCWGC	3 cut(s)	158, 338, 490
TspDTI	ATGAA	3 cut(s)	68, 87, 238
TspRI	CASTG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	231
XceI	RCATGY	2 cut(s)	61, 609
XspI	CTAG	1 cut(s)	494
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.