Rmu_co8449065.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8449065.1
OG0006537
Physical Location & Seq
Reverse (-)
1 .. 1681
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8449065.1_g000001.1.cds

Sequence Viewer

Length: 343 bp
tctaacccccaccattactccccaatatccattacacttaccctcctcctccaagttcctcaaatccttctcctcctcctcctcctctctctcatctcatcaaacatgtgcctggaacacaacctcatctcactccaaacgccgcaagtggctttgcggacaaatgagaagagatcaagatattgataatcgatcaactgaagacaagagtggcatgaacatgtttggttccgatgaagaaataggcacccaaatcccaactcaagctcaatctgttgttgaaggatccggagcagttatggtttcagagtttagacctgcagctgatgtggattatctacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.6

Weight (kDa)

6.31

Isoelectric Point (pI)

62.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 288
AciI CCGC 2 cut(s) 143, 157
AclWI GGATC 2 cut(s) 280, 293
AcuI CTGAAG 1 cut(s) 220
AflIII ACRYGT 2 cut(s) 105, 220
AgsI TTSAA 1 cut(s) 282
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 267, 324
AluI AGCT 2 cut(s) 267, 324
AlwI GGATC 2 cut(s) 280, 293
Aor13HI TCCGGA 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 321
BamHI GGATCC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 113
BfmI CTRYAG 2 cut(s) 319, 339
BfuAI ACCTGC 1 cut(s) 326
BisI GCNGC 2 cut(s) 143, 322
BlsI GCNGC 2 cut(s) 144, 323
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 3 cut(s) 230, 248, 287
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 247
Bsa29I ATCGAT 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 3 cut(s) 27, 32, 57
BseAI TCCGGA 1 cut(s) 288
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 191
BseRI GAGGAG 7 cut(s) 35, 38, 62, 65, 68, 71, 74
BseXI GCAGC 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 246
BshVI ATCGAT 1 cut(s) 191
BsiSI CCGG 1 cut(s) 289
Bsp13I TCCGGA 1 cut(s) 288
Bsp143I GATC 3 cut(s) 173, 192, 285
BspACI CCGC 2 cut(s) 143, 157
BspDI ATCGAT 1 cut(s) 191
BspEI TCCGGA 1 cut(s) 288
BspLI GGNNCC 3 cut(s) 230, 248, 287
BspMAI CTGCAG 1 cut(s) 323
BspMI ACCTGC 1 cut(s) 326
BspPI GGATC 2 cut(s) 280, 293
BspT107I GGYRCC 1 cut(s) 246
BssMI GATC 3 cut(s) 173, 192, 285
Bst2UI CCWGG 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 164
BstKTI GATC 3 cut(s) 176, 195, 288
BstMBI GATC 3 cut(s) 173, 192, 285
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 2 cut(s) 109, 224
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 2 cut(s) 319, 339
BstV1I GCAGC 1 cut(s) 333
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 191
BsuTUI ATCGAT 1 cut(s) 191
BveI ACCTGC 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 191
CviAII CATG 3 cut(s) 106, 215, 221
CviJI RGCY 3 cut(s) 152, 267, 324
CviKI_1 RGCY 3 cut(s) 152, 267, 324
DpnI GATC 3 cut(s) 175, 194, 287
DpnII GATC 3 cut(s) 173, 192, 285
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 111
FaeI CATG 3 cut(s) 109, 218, 224
FaiI YATR 4 cut(s) 107, 216, 222, 300
FatI CATG 3 cut(s) 105, 214, 220
Fnu4HI GCNGC 2 cut(s) 143, 322
Fsp4HI GCNGC 2 cut(s) 143, 322
GluI GCNGC 2 cut(s) 143, 322
HapII CCGG 1 cut(s) 289
Hin1II CATG 3 cut(s) 109, 218, 224
HpaII CCGG 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 233, 308
Hpy188III TCNNGA 2 cut(s) 177, 289
HpyAV CCTTC 2 cut(s) 77, 276
HpyCH4V TGCA 1 cut(s) 321
Hsp92II CATG 3 cut(s) 109, 218, 224
Kpn2I TCCGGA 1 cut(s) 288
Kzo9I GATC 3 cut(s) 173, 192, 285
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 4 cut(s) 98, 125, 302, 331
Lsp1109I GCAGC 1 cut(s) 333
MalI GATC 3 cut(s) 175, 194, 287
MboI GATC 3 cut(s) 173, 192, 285
MboII GAAGA 3 cut(s) 181, 213, 249
MflI RGATCY 1 cut(s) 285
MroI TCCGGA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
NdeII GATC 3 cut(s) 173, 192, 285
NlaIII CATG 3 cut(s) 109, 218, 224
NlaIV GGNNCC 3 cut(s) 230, 248, 287
NspI RCATGY 2 cut(s) 109, 224
PciI ACATGT 2 cut(s) 105, 220
PkrI GCNGC 2 cut(s) 144, 323
PscI ACATGT 2 cut(s) 105, 220
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 230, 248, 287
PstI CTGCAG 1 cut(s) 323
PsuI RGATCY 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 324
RseI CAYNNNNRTG 1 cut(s) 219
SatI GCNGC 2 cut(s) 143, 322
Sau3AI GATC 3 cut(s) 173, 192, 285
ScrFI CCNGG 1 cut(s) 113
SetI ASST 4 cut(s) 126, 269, 320, 326
SfcI CTRYAG 2 cut(s) 319, 339
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SsiI CCGC 2 cut(s) 143, 157
StyD4I CCNGG 1 cut(s) 111
TaqI TCGA 1 cut(s) 191
TauI GCSGC 1 cut(s) 145
TseI GCWGC 1 cut(s) 321
TspDTI ATGAA 2 cut(s) 231, 250
XceI RCATGY 2 cut(s) 109, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.