RchiOBHm_Chr2g0084451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006537
Physical Location & Seq
Reverse (-)
216887 .. 222254
5368 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46004

Sequence Viewer

Length: 849 bp
ATGAGCAGCCCAGCAGTACGTTTGAGGCTTTTCTTGCCTCTAACCCCCACCATTACTCCCCGATATCCATTACACTTACCCTCCTCCTCCAAGTTCCTCAAATCCTTCTCCTCCTCCTCCTCCTCCTCTTCTCTCTCATCTCACCAAACATGTGCCTGGAACACAACCTCATCTCACTCCAAACGCCGCAAGTGGCTTTGCGGACAAATGAGAAGAGATCAAGATATTGATAATCGATCAACTGAAGACAAGAGTGGCATGAACATGTTTGGTTCCGATGAAGAAATAGGCACCCAAATCCCAACTCAAGCTCAATCTGTTGTTGAAGGATCCGGAGCAGTTATGGTTTCAGAGTTTAGACCTGCAGCTGATGTGGATTATCTACAGGAGTTATTAGCCATTCAGCAACAAGGCCCCAGATCAATTGGCTTTTTTGGGACCCGGAATATGGGATTCATGCATCAAGAACTTATTGAGATACTTAGTTATGCGATGGTTATCACTAAAAATCACATTTATACATCAGGGGCATCTGGTACTAATGCAGCTGTTATCAGGGGTGCTTTAAGAGCAGAGAAACCAGAACTGCTTACTGTAATCTTGCCTCAAAGCTTAAAAAAGCAACCTCCAGAGAGCCAGGAATTATTGTCAAAAGTCAAGAATGTGATAGAGAAGCCTCACAATGATCATCTACCGCTGCTAGAAGCCAGCAGGTTGTGCAATATGGACATCATTTCACATGTACAGCAAGTAATATGCTTTGCGTTCCATGACAGTAAATTGTTAATGGAAACATGTCAAGAGGCAAAAAATCTCCGCAAAATTGTGACGCTGTTCTACCTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.51

Weight (kDa)

8.56

Isoelectric Point (pI)

61.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 370, 702
AccB1I GGYRCC 1 cut(s) 290
AccIII TCCGGA 1 cut(s) 332
AciI CCGC 4 cut(s) 187, 201, 695, 817
AclWI GGATC 2 cut(s) 324, 337
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 3 cut(s) 18, 538, 744
AfiI CCNNNNNNNGG 1 cut(s) 448
AflIII ACRYGT 4 cut(s) 149, 264, 739, 794
AgsI TTSAA 1 cut(s) 326
AjnI CCWGG 3 cut(s) 155, 636, 840
AluBI AGCT 4 cut(s) 311, 368, 548, 612
AluI AGCT 4 cut(s) 311, 368, 548, 612
AlwI GGATC 2 cut(s) 324, 337
Aor13HI TCCGGA 1 cut(s) 332
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 4 cut(s) 6, 365, 545, 697
AspS9I GGNCC 2 cut(s) 413, 438
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 438
BamHI GGATCC 1 cut(s) 329
BanI GGYRCC 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 4 cut(s) 18, 377, 557, 684
BccI CCATC 1 cut(s) 487
BciT130I CCWGG 3 cut(s) 157, 638, 842
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 1 cut(s) 442
BfaI CTAG 1 cut(s) 701
BfmI CTRYAG 2 cut(s) 363, 383
BfuAI ACCTGC 2 cut(s) 370, 702
BisI GCNGC 5 cut(s) 7, 187, 366, 546, 698
BlsI GCNGC 5 cut(s) 8, 188, 367, 547, 699
Bme1390I CCNGG 4 cut(s) 157, 442, 638, 842
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 2 cut(s) 413, 438
BmiI GGNNCC 6 cut(s) 274, 292, 331, 415, 439, 440
BmrFI CCNGG 4 cut(s) 157, 442, 638, 842
BmsI GCATC 2 cut(s) 469, 539
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 442
Bsa29I ATCGAT 1 cut(s) 235
BsaBI GATNNNNATC 1 cut(s) 497
BsaWI WCCGGW 1 cut(s) 332
BsaXI ACNNNNNCTCC 4 cut(s) 40, 65, 70, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse8I GATNNNNATC 1 cut(s) 497
BseAI TCCGGA 1 cut(s) 332
BseBI CCWGG 3 cut(s) 157, 638, 842
BseCI ATCGAT 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 497
BseLI CCNNNNNNNGG 1 cut(s) 448
BseRI GAGGAG 8 cut(s) 73, 76, 100, 103, 106, 109, 112, 115
BseXI GCAGC 4 cut(s) 18, 377, 557, 684
BseYI CCCAGC 1 cut(s) 10
BshFI GGCC 1 cut(s) 414
BshNI GGYRCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 235
BsiSI CCGG 2 cut(s) 333, 442
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 451
BsnI GGCC 1 cut(s) 414
Bsp13I TCCGGA 1 cut(s) 332
Bsp1407I TGTACA 1 cut(s) 742
Bsp143I GATC 5 cut(s) 217, 236, 329, 419, 685
BspACI CCGC 4 cut(s) 187, 201, 695, 817
BspANI GGCC 1 cut(s) 414
BspDI ATCGAT 1 cut(s) 235
BspEI TCCGGA 1 cut(s) 332
BspLI GGNNCC 6 cut(s) 274, 292, 331, 415, 439, 440
BspMAI CTGCAG 1 cut(s) 367
BspMI ACCTGC 2 cut(s) 370, 702
BspPI GGATC 2 cut(s) 324, 337
BspT107I GGYRCC 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 742
BssMI GATC 5 cut(s) 217, 236, 329, 419, 685
Bst2UI CCWGG 3 cut(s) 157, 638, 842
Bst4CI ACNGT 2 cut(s) 595, 776
Bst6I CTCTTC 2 cut(s) 133, 208
BstAPI GCANNNNNTGC 1 cut(s) 717
BstAUI TGTACA 1 cut(s) 742
BstC8I GCNNGC 1 cut(s) 709
BstDEI CTNAG 1 cut(s) 482
BstKTI GATC 5 cut(s) 220, 239, 332, 422, 688
BstMBI GATC 5 cut(s) 217, 236, 329, 419, 685
BstMWI GCNNNNNNNGC 3 cut(s) 34, 569, 717
BstNI CCWGG 3 cut(s) 157, 638, 842
BstNSI RCATGY 4 cut(s) 153, 268, 743, 798
BstSCI CCNGG 4 cut(s) 155, 440, 636, 840
BstSFI CTRYAG 2 cut(s) 363, 383
BstV1I GCAGC 4 cut(s) 18, 377, 557, 684
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
Bsu15I ATCGAT 1 cut(s) 235
BsuRI GGCC 1 cut(s) 414
BsuTUI ATCGAT 1 cut(s) 235
BtgZI GCGATG 1 cut(s) 506
BveI ACCTGC 2 cut(s) 370, 702
Cac8I GCNNGC 1 cut(s) 709
Cfr13I GGNCC 2 cut(s) 413, 438
ClaI ATCGAT 1 cut(s) 235
CseI GACGC 1 cut(s) 838
Csp6I GTAC 3 cut(s) 17, 537, 743
CviAII CATG 7 cut(s) 150, 259, 265, 457, 740, 770, 795
CviQI GTAC 3 cut(s) 17, 537, 743
DdeI CTNAG 1 cut(s) 482
DpnI GATC 5 cut(s) 219, 238, 331, 421, 687
DpnII GATC 5 cut(s) 217, 236, 329, 419, 685
Eam1104I CTCTTC 2 cut(s) 133, 208
EarI CTCTTC 2 cut(s) 133, 208
Eco32I GATATC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 438
Eco57I CTGAAG 1 cut(s) 264
EcoO109I RGGNCCY 2 cut(s) 413, 438
EcoRII CCWGG 3 cut(s) 155, 636, 840
EcoRV GATATC 1 cut(s) 65
EcoT22I ATGCAT 1 cut(s) 462
FaeI CATG 7 cut(s) 153, 262, 268, 460, 743, 773, 798
FaqI GGGAC 1 cut(s) 451
FatI CATG 7 cut(s) 149, 258, 264, 456, 739, 769, 794
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 5 cut(s) 7, 187, 366, 546, 698
Fsp4HI GCNGC 5 cut(s) 7, 187, 366, 546, 698
FspBI CTAG 1 cut(s) 701
GluI GCNGC 5 cut(s) 7, 187, 366, 546, 698
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 1 cut(s) 414
HapII CCGG 2 cut(s) 333, 442
HgaI GACGC 1 cut(s) 838
Hin1II CATG 7 cut(s) 153, 262, 268, 460, 743, 773, 798
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 1 cut(s) 453
HpaII CCGG 2 cut(s) 333, 442
HphI GGTGA 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 277, 352
Hpy188III TCNNGA 6 cut(s) 221, 333, 464, 629, 658, 800
HpyAV CCTTC 2 cut(s) 115, 320
HpyCH4III ACNGT 2 cut(s) 595, 776
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 4 cut(s) 365, 460, 545, 720
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 569, 717
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 7 cut(s) 153, 262, 268, 460, 743, 773, 798
KflI GGGWCCC 1 cut(s) 438
Kpn2I TCCGGA 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 5 cut(s) 217, 236, 329, 419, 685
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 4 cut(s) 18, 377, 557, 684
LweI GCATC 2 cut(s) 469, 539
MaeI CTAG 1 cut(s) 701
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 826
MalI GATC 5 cut(s) 219, 238, 331, 421, 687
MboI GATC 5 cut(s) 217, 236, 329, 419, 685
MboII GAAGA 4 cut(s) 120, 225, 257, 293
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 1 cut(s) 329
MluCI AATT 4 cut(s) 423, 641, 779, 822
Mph1103I ATGCAT 1 cut(s) 462
MroI TCCGGA 1 cut(s) 332
MseI TTAA 4 cut(s) 566, 614, 785, 847
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 3 cut(s) 368, 548, 697
MspI CCGG 2 cut(s) 333, 442
MspR9I CCNGG 4 cut(s) 157, 442, 638, 842
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 3 cut(s) 157, 638, 842
MwoI GCNNNNNNNGC 3 cut(s) 34, 569, 717
NciI CCSGG 1 cut(s) 442
NdeII GATC 5 cut(s) 217, 236, 329, 419, 685
NlaIII CATG 7 cut(s) 153, 262, 268, 460, 743, 773, 798
NlaIV GGNNCC 6 cut(s) 274, 292, 331, 415, 439, 440
NmuCI GTSAC 1 cut(s) 826
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 4 cut(s) 153, 268, 743, 798
PciI ACATGT 4 cut(s) 149, 264, 739, 794
PfeI GAWTC 1 cut(s) 453
PkrI GCNGC 5 cut(s) 8, 188, 367, 547, 699
PpuMI RGGWCCY 1 cut(s) 438
PscI ACATGT 4 cut(s) 149, 264, 739, 794
Psp5II RGGWCCY 1 cut(s) 438
Psp6I CCWGG 3 cut(s) 155, 636, 840
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 3 cut(s) 155, 636, 840
PspN4I GGNNCC 6 cut(s) 274, 292, 331, 415, 439, 440
PspPI GGNCC 2 cut(s) 413, 438
PspPPI RGGWCCY 1 cut(s) 438
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 329
PvuII CAGCTG 2 cut(s) 368, 548
RsaI GTAC 3 cut(s) 18, 538, 744
RsaNI GTAC 3 cut(s) 17, 537, 743
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 4 cut(s) 566, 614, 785, 847
SatI GCNGC 5 cut(s) 7, 187, 366, 546, 698
Sau3AI GATC 5 cut(s) 217, 236, 329, 419, 685
Sau96I GGNCC 2 cut(s) 413, 438
ScrFI CCNGG 4 cut(s) 157, 442, 638, 842
SfaNI GCATC 2 cut(s) 469, 539
SfcI CTRYAG 2 cut(s) 363, 383
SinI GGWCC 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 4 cut(s) 423, 641, 779, 822
SsiI CCGC 4 cut(s) 187, 201, 695, 817
SspMI CTAG 1 cut(s) 701
StyD4I CCNGG 4 cut(s) 155, 440, 636, 840
TaaI ACNGT 2 cut(s) 595, 776
TaiI ACGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 235
TasI AATT 4 cut(s) 423, 641, 779, 822
TatI WGTACW 1 cut(s) 742
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 4 cut(s) 566, 614, 785, 847
Tru9I TTAA 4 cut(s) 566, 614, 785, 847
TseFI GTSAC 1 cut(s) 826
TseI GCWGC 4 cut(s) 6, 365, 545, 697
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 3 cut(s) 275, 294, 445
VpaK11BI GGWCC 1 cut(s) 438
XceI RCATGY 4 cut(s) 153, 268, 743, 798
XspI CTAG 1 cut(s) 701
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.