Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006537

Physical Location & Seq

Genomic Coordinates Forward (+)

17793362 .. 17796837

Gene Structure 3476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1087500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAACACCCTTGCATTTGAGGCTCTTCCAGCCTCTCAACTCCATTACTCCCTATCCTTCTTCTTCAGACTTCCGCTTCAAATCCTTTCACTCTGCAAGCCCTAATTTCAATCTTTCTTCTCTCTCATCTCACAACCACTCATGTGCTCGACAAAGGACAACCACTCGCTCCGAACGGAAGTGGCTTTGCGGACACTTGAGAAGAGATCAAGACATAGATAGTCGATCCAATGAAGACGCCACTGGTGCGCGTATGTTTGGTTCCGATGAGGAAGTAGGCACCCAAATCCCAACACAGGCTCAATCTGTTGTCGAAGGATCAGGGGCAGTTATGGTTTCAGAGTTCAGACCAGTGGCCGATGTGGATTATCTACAGGAGTTATTAGCCATTCAGCAACAAGGACCCAGAGCAATTGGTTTCTTTGGGACCCGGAATATGGGATTCATGCATCAAGAACTTATTGAGATTCTCAGCTATGCAATGGTTATCACTAAAAATCACATTTATACATCAGGGGCATCAGGCACTAATGCAGCTGTAATCAGGGGTGCTTTAAGAGCTGAGAAACCAGAGCTGCTTACCGTAATCTTGCCCCAGAGTCTGAAGAAGCAACCACCTGAGAGCCAGGAATTATTGTCAAAAGTCAAGAATGTGATAGAAAAGCCTCAAAATGATCATCTACCACTGATAGAAGCGAGCAGGTTGTGCAACATGAACATCATTTCACATGTACAGCAAGTTATATGCTTTGCGTTTCACGACAGTAGATTGCTAATGGAAACTTGTCAAGAGGCCAAAAATCTCCGCAAAATTGTGACTCTCTTCTACCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

31.33

Weight (kDa)

7.73

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43945 AT3G59870
fragaria_vesca	FvH4_1g00160 FvH4_1g00160 FvH4_1g00160 FvH4_1g00160
malus_domestica	MD00G1087500.v1.1 MD15G1143300.v1.1
prunus_persica	Prupe.7G269700_v2.0.a1 Prupe.7G269700_v2.0.a1
pyrus_communis	pycom15g12940 pycom290g00220
rosa_chinensis	RchiOBHm_Chr2g0084451
rosa_laevigata	RLG00000015619
rosa_multiflora	Rmu_co8449065.1_g000001 Rmu_sc0009404.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156050
rosa_rugosa	Rorug01G0454100 Rorug01G0454100 Rorug01G0454100 Rorug01G0454100
rosa_samantha	Rh2AG002200 Rh2BG001800 Rh2CG002100 Rh2DG002300
rosa_wichuraiana	Rw2G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	693
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	253
AciI	CCGC	3 cut(s)	76, 192, 808
AclWI	GGATC	2 cut(s)	222, 328
AcoI	YGGCCR	1 cut(s)	357
AcuI	CTGAAG	2 cut(s)	51, 626
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	735
AfiI	CCNNNNNNNGG	2 cut(s)	298, 439
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	2 cut(s)	82, 112
AjnI	CCWGG	2 cut(s)	627, 831
AleI	CACNNNNGTG	1 cut(s)	144
AluBI	AGCT	4 cut(s)	477, 539, 563, 577
AluI	AGCT	4 cut(s)	477, 539, 563, 577
Alw21I	GWGCWC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	222, 328
AlwNI	CAGNNNCTG	1 cut(s)	604
AoxI	GGCC	2 cut(s)	357, 795
ApeKI	GCWGC	2 cut(s)	536, 577
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	404, 429
AsuC2I	CCSGG	1 cut(s)	433
AvaII	GGWCC	2 cut(s)	404, 429
BanI	GGYRCC	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	548, 564
BciT130I	CCWGG	2 cut(s)	629, 833
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	693
BisI	GCNGC	2 cut(s)	537, 578
BlsI	GCNGC	2 cut(s)	538, 579
Bme1390I	CCNGG	3 cut(s)	433, 629, 833
Bme18I	GGWCC	2 cut(s)	404, 429
BmgT120I	GGNCC	2 cut(s)	404, 429
BmiI	GGNNCC	5 cut(s)	265, 283, 406, 430, 431
BmrFI	CCNGG	3 cut(s)	433, 629, 833
BmsI	GCATC	2 cut(s)	460, 530
BpiI	GAAGAC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	433
BsaHI	GRCGYC	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 439
Bse1I	ACTGG	2 cut(s)	250, 353
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	629, 833
BseLI	CCNNNNNNNGG	2 cut(s)	298, 439
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	3 cut(s)	487, 555, 612
BseNI	ACTGG	2 cut(s)	250, 353
BseXI	GCAGC	2 cut(s)	548, 564
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	359, 797
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	2 cut(s)	298, 439
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	359, 797
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	733
Bsp143I	GATC	4 cut(s)	208, 227, 320, 676
BspACI	CCGC	3 cut(s)	76, 192, 808
BspANI	GGCC	2 cut(s)	359, 797
BspCNI	CTCAG	3 cut(s)	486, 556, 613
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	5 cut(s)	265, 283, 406, 430, 431
BspMI	ACCTGC	1 cut(s)	693
BspPI	GGATC	2 cut(s)	222, 328
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	733
BsrI	ACTGG	2 cut(s)	250, 353
BssMI	GATC	4 cut(s)	208, 227, 320, 676
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	629, 833
Bst4CI	ACNGT	2 cut(s)	586, 767
Bst6I	CTCTTC	3 cut(s)	32, 199, 830
BstACI	GRCGYC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	708
BstAUI	TGTACA	1 cut(s)	733
BstC8I	GCNNGC	2 cut(s)	100, 700
BstDEI	CTNAG	3 cut(s)	473, 564, 621
BstFNI	CGCG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	4 cut(s)	211, 230, 323, 679
BstMBI	GATC	4 cut(s)	208, 227, 320, 676
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 31, 248, 560, 708
BstNI	CCWGG	2 cut(s)	629, 833
BstNSI	RCATGY	1 cut(s)	734
BstSCI	CCNGG	3 cut(s)	431, 627, 831
BstSFI	CTRYAG	1 cut(s)	374
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	548, 564
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	359, 797
BtsIMutI	CAGTG	3 cut(s)	243, 360, 686
BveI	ACCTGC	1 cut(s)	693
Cac8I	GCNNGC	2 cut(s)	100, 700
CaiI	CAGNNNCTG	1 cut(s)	604
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	404, 429
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	734
CviAII	CATG	4 cut(s)	144, 448, 715, 731
CviQI	GTAC	1 cut(s)	734
DdeI	CTNAG	3 cut(s)	473, 564, 621
DpnI	GATC	4 cut(s)	210, 229, 322, 678
DpnII	GATC	4 cut(s)	208, 227, 320, 676
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	3 cut(s)	32, 199, 830
EarI	CTCTTC	3 cut(s)	32, 199, 830
Eco47I	GGWCC	2 cut(s)	404, 429
Eco57I	CTGAAG	2 cut(s)	51, 626
EcoO109I	RGGNCCY	2 cut(s)	404, 429
EcoRII	CCWGG	2 cut(s)	627, 831
EcoT22I	ATGCAT	1 cut(s)	453
FaeI	CATG	4 cut(s)	147, 451, 718, 734
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	4 cut(s)	143, 447, 714, 730
FbaI	TGATCA	1 cut(s)	676
Fnu4HI	GCNGC	2 cut(s)	537, 578
Fsp4HI	GCNGC	2 cut(s)	537, 578
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	537, 578
HaeIII	GGCC	2 cut(s)	359, 797
HapII	CCGG	1 cut(s)	433
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	147, 451, 718, 734
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	4 cut(s)	444, 469, 601, 820
HpaII	CCGG	1 cut(s)	433
Hpy188I	TCNGA	6 cut(s)	70, 175, 268, 343, 350, 606
Hpy188III	TCNNGA	5 cut(s)	212, 455, 649, 761, 791
HpyAV	CCTTC	2 cut(s)	69, 311
HpyCH4III	ACNGT	2 cut(s)	586, 767
HpyCH4V	TGCA	6 cut(s)	16, 98, 451, 482, 536, 711
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 31, 248, 560, 708
HpyF3I	CTNAG	3 cut(s)	473, 564, 621
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	147, 451, 718, 734
HspAI	GCGC	1 cut(s)	251
KflI	GGGWCCC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	4 cut(s)	208, 227, 320, 676
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	2 cut(s)	548, 564
LweI	GCATC	2 cut(s)	460, 530
MaeIII	GTNAC	1 cut(s)	817
MalI	GATC	4 cut(s)	210, 229, 322, 678
MboI	GATC	4 cut(s)	208, 227, 320, 676
MboII	GAAGA	8 cut(s)	19, 54, 57, 111, 216, 248, 619, 817
MfeI	CAATTG	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	4 cut(s)	106, 414, 632, 813
MlyI	GAGTC	2 cut(s)	610, 814
MnlI	CCTC	5 cut(s)	15, 45, 265, 678, 787
Mph1103I	ATGCAT	1 cut(s)	453
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	3 cut(s)	433, 629, 833
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	2 cut(s)	629, 833
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	5 cut(s)	22, 31, 248, 560, 708
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	4 cut(s)	208, 227, 320, 676
NlaIII	CATG	4 cut(s)	147, 451, 718, 734
NlaIV	GGNNCC	5 cut(s)	265, 283, 406, 430, 431
NmuCI	GTSAC	1 cut(s)	817
NsiI	ATGCAT	1 cut(s)	453
NspI	RCATGY	1 cut(s)	734
OliI	CACNNNNGTG	1 cut(s)	144
PciI	ACATGT	1 cut(s)	730
PciSI	GCTCTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	444, 469
PkrI	GCNGC	2 cut(s)	538, 579
PleI	GAGTC	2 cut(s)	609, 814
PpsI	GAGTC	2 cut(s)	609, 814
PpuMI	RGGWCCY	2 cut(s)	404, 429
PscI	ACATGT	1 cut(s)	730
Psp5II	RGGWCCY	2 cut(s)	404, 429
Psp6I	CCWGG	2 cut(s)	627, 831
PspGI	CCWGG	2 cut(s)	627, 831
PspN4I	GGNNCC	5 cut(s)	265, 283, 406, 430, 431
PspPI	GGNCC	2 cut(s)	404, 429
PspPPI	RGGWCCY	2 cut(s)	404, 429
PsrI	GAACNNNNNNTAC	2 cut(s)	247, 279
PstNI	CAGNNNCTG	1 cut(s)	604
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	735
RsaNI	GTAC	1 cut(s)	734
RseI	CAYNNNNRTG	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	2 cut(s)	537, 578
Sau3AI	GATC	4 cut(s)	208, 227, 320, 676
Sau96I	GGNCC	2 cut(s)	404, 429
SchI	GAGTC	2 cut(s)	610, 814
ScrFI	CCNGG	3 cut(s)	433, 629, 833
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	7 cut(s)	479, 541, 565, 579, 622, 707, 834
SfaNI	GCATC	2 cut(s)	460, 530
SfcI	CTRYAG	1 cut(s)	374
SinI	GGWCC	2 cut(s)	404, 429
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	4 cut(s)	106, 414, 632, 813
SsiI	CCGC	3 cut(s)	76, 192, 808
StyD4I	CCNGG	3 cut(s)	431, 627, 831
TaaI	ACNGT	2 cut(s)	586, 767
TaqI	TCGA	3 cut(s)	151, 226, 315
TasI	AATT	4 cut(s)	106, 414, 632, 813
TatI	WGTACW	1 cut(s)	733
TfiI	GAWTC	2 cut(s)	444, 469
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	3 cut(s)	250, 360, 693
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	2 cut(s)	536, 577
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	3 cut(s)	249, 436, 731
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	3 cut(s)	250, 360, 693
VpaK11BI	GGWCC	2 cut(s)	404, 429
XceI	RCATGY	1 cut(s)	734
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.