AT3G59870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006537
Physical Location & Seq
Reverse (-)
22116109 .. 22118298
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59870.1

Sequence Viewer

Length: 867 bp
ATGAGTTCGGCTCTACCTTTGAAGCTTTTGTTGCCTCTTACAACAACTTCATTGCTACCTTCTCCTTTCCGATCGGATAACCCTAACTTCTATCGCCGTCGTTCCTCTTCCTCTACTTCGTGTTCTTCTCAATCCCAATCGTTTCAGCTTTTCTCTGTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATGTGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGAACAAAGAGGACAATGTGACTTGTAGGTTTGACTCAGATGAAGACACCACCACCACCGGACTCCGGATTCCAACACAAGCTCAAGCTATCGTTGAAGGACCTGGTTCACTTGCTGTGTCGGAGCTACAACGAGTCCCTGATGTAGATTATATACAAGAACTGTTGGCTATACAGCAACAAGGACCAAGAACAATTGGCTTCTTTGGAACTAGAAATATGGGTTTCATGCATCAAGAGCTCATTCAGATTCTTAGCTATGCTATGGTTATAACTAAAAACCATATCTACACATCAGGTGCAGCTGGAACCAATGCAGCTGTTATAAGAGGTGCACTTAGAGCAGAGAGACCAGAGCTTCTTACAGTTATCTTACCTCAAAGTTTGAAAAAGCAACCTCCTGAAAGCCAGGAACTACTGTCAAAAGTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAAGCCAGCAGGCTATGTAACATGGATATCATATCACAAGTGCAACAAATCATTTGCTTTGCGTTTCATGATAGTAAGCTTCTCATGGAGACATGTCAAGAAGCTAGAAATCTCCGGAAGATTGTTACCCTCTTCTACCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.42

Weight (kDa)

6.96

Isoelectric Point (pI)

72.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 518, 572
AccIII TCCGGA 2 cut(s) 312, 834
AclWI GGATC 2 cut(s) 165, 171
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 1 cut(s) 675
AfiI CCNNNNNNNGG 1 cut(s) 312
AflIII ACRYGT 1 cut(s) 812
AgsI TTSAA 3 cut(s) 22, 344, 634
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 3 cut(s) 349, 654, 858
Alw21I GWGCWC 2 cut(s) 489, 583
Alw26I GTCTC 2 cut(s) 589, 803
Alw44I GTGCAC 1 cut(s) 579
AlwI GGATC 2 cut(s) 165, 171
Aor13HI TCCGGA 2 cut(s) 312, 834
ApaLI GTGCAC 1 cut(s) 579
ApeKI GCWGC 2 cut(s) 548, 563
AspS9I GGNCC 2 cut(s) 347, 431
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 2 cut(s) 347, 431
BaeGI GKGCMC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 489, 583
BbvI GCAGC 2 cut(s) 560, 575
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 3 cut(s) 351, 656, 860
BcoDI GTCTC 2 cut(s) 589, 803
BfaI CTAG 2 cut(s) 459, 825
BisI GCNGC 2 cut(s) 549, 564
BlsI GCNGC 2 cut(s) 550, 565
Bme1390I CCNGG 3 cut(s) 351, 656, 860
Bme18I GGWCC 2 cut(s) 347, 431
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 347, 431
BmiI GGNNCC 1 cut(s) 556
BmrFI CCNGG 3 cut(s) 351, 656, 860
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 297
BplI GAGNNNNNCTC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 589
BsaWI WCCGGW 3 cut(s) 305, 312, 834
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 175
BseAI TCCGGA 2 cut(s) 312, 834
BseBI CCWGG 3 cut(s) 351, 656, 860
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 2 cut(s) 560, 575
BsgI GTGCAG 1 cut(s) 567
Bsh1285I CGRYCG 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 489, 583
BsiSI CCGG 3 cut(s) 306, 313, 835
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 2 cut(s) 589, 803
BsmFI GGGAC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 589
Bsp1286I GDGCHC 2 cut(s) 489, 583
Bsp13I TCCGGA 2 cut(s) 312, 834
Bsp143I GATC 4 cut(s) 71, 170, 176, 223
BspCNI CTCAG 1 cut(s) 296
BspEI TCCGGA 2 cut(s) 312, 834
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 1 cut(s) 556
BspPI GGATC 2 cut(s) 165, 171
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 50
BssMI GATC 4 cut(s) 71, 170, 176, 223
BssNI GRCGYC 1 cut(s) 166
Bst2UI CCWGG 3 cut(s) 351, 656, 860
Bst4CI ACNGT 4 cut(s) 411, 613, 666, 714
Bst6I CTCTTC 2 cut(s) 112, 857
BstACI GRCGYC 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 727, 731
BstDEI CTNAG 3 cut(s) 283, 500, 584
BstKTI GATC 4 cut(s) 74, 173, 179, 226
BstMAI GTCTC 2 cut(s) 589, 803
BstMBI GATC 4 cut(s) 71, 170, 176, 223
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 3 cut(s) 31, 484, 587
BstNI CCWGG 3 cut(s) 351, 656, 860
BstNSI RCATGY 1 cut(s) 816
BstSCI CCNGG 3 cut(s) 349, 654, 858
BstSLI GKGCMC 1 cut(s) 583
BstV1I GCAGC 2 cut(s) 560, 575
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BtrI CACGTC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 727, 731
CciI TCATGA 1 cut(s) 787
Cfr13I GGNCC 2 cut(s) 347, 431
CseI GACGC 1 cut(s) 174
CsiI ACCWGGT 1 cut(s) 349
Csp6I GTAC 1 cut(s) 674
CviAII CATG 6 cut(s) 199, 475, 742, 788, 805, 813
CviQI GTAC 1 cut(s) 674
DdeI CTNAG 3 cut(s) 283, 500, 584
DpnI GATC 4 cut(s) 73, 172, 178, 225
DpnII GATC 4 cut(s) 71, 170, 176, 223
Eam1104I CTCTTC 2 cut(s) 112, 857
EarI CTCTTC 2 cut(s) 112, 857
Ecl136II GAGCTC 1 cut(s) 487
Eco24I GRGCYC 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 589
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 2 cut(s) 347, 431
Eco53kI GAGCTC 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 487
EcoO109I RGGNCCY 1 cut(s) 347
EcoRII CCWGG 3 cut(s) 349, 654, 858
EcoRV GATATC 1 cut(s) 748
EcoT22I ATGCAT 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 489
FaeI CATG 6 cut(s) 202, 478, 745, 791, 808, 816
FaqI GGGAC 1 cut(s) 368
FatI CATG 6 cut(s) 198, 474, 741, 787, 804, 812
Fnu4HI GCNGC 2 cut(s) 549, 564
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 2 cut(s) 549, 564
FspBI CTAG 2 cut(s) 459, 825
GluI GCNGC 2 cut(s) 549, 564
HapII CCGG 3 cut(s) 306, 313, 835
HgaI GACGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 6 cut(s) 202, 478, 745, 791, 808, 816
HindIII AAGCTT 2 cut(s) 23, 797
HinfI GANTC 5 cut(s) 281, 309, 316, 381, 496
HpaII CCGG 3 cut(s) 306, 313, 835
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 3 cut(s) 250, 356, 581
Hpy188I TCNGA 5 cut(s) 71, 76, 286, 370, 495
Hpy188III TCNNGA 9 cut(s) 174, 209, 227, 313, 482, 647, 788, 818, 835
Hpy8I GTNNAC 3 cut(s) 250, 356, 581
Hpy99I CGWCG 3 cut(s) 102, 168, 236
HpyAV CCTTC 2 cut(s) 69, 338
HpyCH4III ACNGT 4 cut(s) 411, 613, 666, 714
HpyCH4IV ACGT 2 cut(s) 234, 681
HpyCH4V TGCA 5 cut(s) 478, 548, 563, 581, 763
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 484, 587
HpyF3I CTNAG 3 cut(s) 283, 500, 584
HpySE526I ACGT 2 cut(s) 234, 681
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 6 cut(s) 202, 478, 745, 791, 808, 816
Kpn2I TCCGGA 2 cut(s) 312, 834
Kzo9I GATC 4 cut(s) 71, 170, 176, 223
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 2 cut(s) 560, 575
LweI GCATC 1 cut(s) 487
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 2 cut(s) 459, 825
MaeII ACGT 2 cut(s) 234, 681
MaeIII GTNAC 3 cut(s) 265, 737, 844
MalI GATC 4 cut(s) 73, 172, 178, 225
MboI GATC 4 cut(s) 71, 170, 176, 223
MboII GAAGA 5 cut(s) 99, 117, 302, 844, 850
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 489, 583
MluCI AATT 1 cut(s) 441
MlyI GAGTC 3 cut(s) 275, 303, 390
MmeI TCCRAC 2 cut(s) 344, 348
Mph1103I ATGCAT 1 cut(s) 480
MroI TCCGGA 2 cut(s) 312, 834
MspA1I CMGCKG 2 cut(s) 551, 566
MspI CCGG 3 cut(s) 306, 313, 835
MspR9I CCNGG 3 cut(s) 351, 656, 860
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 3 cut(s) 351, 656, 860
MwoI GCNNNNNNNGC 3 cut(s) 31, 484, 587
NdeII GATC 4 cut(s) 71, 170, 176, 223
NlaIII CATG 6 cut(s) 202, 478, 745, 791, 808, 816
NlaIV GGNNCC 1 cut(s) 556
NmuCI GTSAC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 1 cut(s) 816
PagI TCATGA 1 cut(s) 787
PciI ACATGT 1 cut(s) 812
PfeI GAWTC 2 cut(s) 316, 496
PkrI GCNGC 2 cut(s) 550, 565
Ple19I CGATCG 1 cut(s) 74
PleI GAGTC 3 cut(s) 275, 303, 389
PpsI GAGTC 3 cut(s) 275, 303, 389
PpuMI RGGWCCY 1 cut(s) 347
PscI ACATGT 1 cut(s) 812
PsiI TTATAA 2 cut(s) 518, 572
Psp124BI GAGCTC 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 3 cut(s) 349, 654, 858
PspGI CCWGG 3 cut(s) 349, 654, 858
PspN4I GGNNCC 1 cut(s) 556
PspPI GGNCC 2 cut(s) 347, 431
PspPPI RGGWCCY 1 cut(s) 347
PsuI RGATCY 1 cut(s) 176
PvuI CGATCG 1 cut(s) 74
PvuII CAGCTG 2 cut(s) 551, 566
RsaI GTAC 1 cut(s) 675
RsaNI GTAC 1 cut(s) 674
SacI GAGCTC 1 cut(s) 489
SatI GCNGC 2 cut(s) 549, 564
Sau3AI GATC 4 cut(s) 71, 170, 176, 223
Sau96I GGNCC 2 cut(s) 347, 431
SchI GAGTC 3 cut(s) 275, 303, 390
ScrFI CCNGG 3 cut(s) 351, 656, 860
SduI GDGCHC 2 cut(s) 489, 583
SexAI ACCWGGT 1 cut(s) 349
SfaNI GCATC 1 cut(s) 487
SinI GGWCC 2 cut(s) 347, 431
SmlI CTYRAG 1 cut(s) 330
SmoI CTYRAG 1 cut(s) 330
Sse9I AATT 1 cut(s) 441
SspMI CTAG 2 cut(s) 459, 825
SstI GAGCTC 1 cut(s) 489
StyD4I CCNGG 3 cut(s) 349, 654, 858
TaaI ACNGT 4 cut(s) 411, 613, 666, 714
TaiI ACGT 2 cut(s) 237, 684
TasI AATT 1 cut(s) 441
TatI WGTACW 1 cut(s) 673
TfiI GAWTC 2 cut(s) 316, 496
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 548, 563
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 39, 303, 463, 776
VneI GTGCAC 1 cut(s) 579
VpaK11BI GGWCC 2 cut(s) 347, 431
XceI RCATGY 1 cut(s) 816
XspI CTAG 2 cut(s) 459, 825
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.