Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006537

Physical Location & Seq

Genomic Coordinates Forward (+)

92542869 .. 92548513

Gene Structure 5645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00156050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAGCAGCCCAGTACCTTTGAGGCTTTTCTTGCCTCTGACCCCCACCATTACTCCCCAATATCCATTACACTTACCCTCCTCCTCCAAGTTCCTCAAATCCTTCTCCTCCTCCTCTCTCTCATCTCACCAAACATGTGCCTGGAACACAACCTCATCTCACTCCAAACGCCGCAAGTGGCTTTGCGGACAAATGAGAAGAGATCAAGATATAGATAATCGATCAACTGAAGACAAGAGTAGCATGAACTTGTTTGGTTCCGATGAAGAAATAGGCACCCAAATCCCAACTCAAGCTCAATCTGTTGTTGAAGGATCTGGAGCAGTTATGGTTTCAGAGTTTAGACCTGCAGCTGATGTGGATTATCTACAGGAGTTATTAGCCATTCAGCAACAAGGGCCCAGATCAATTGGCTTTTTTGGGACCCGGAATATGGGATTCATGCATCAAGAACTTATTGAGATACTTAGTTATGCGATGGTTATCACTAAAAATCACATTTATACATCAGGGGCATCTGGTACTAATGCAGCTGTTATCAGGGGTGCTTTAAGAGCAGAGAAACCAGAACTGCTTACTGTAATCTTGCCTCAAAGCTTAAAAAAGCAACCTCCAGAGAGCCAGGAATTATTGTCAAAAGTCAAGAATGTGATAGAGAAGCCTCACAATGATCATCTACCGCTGCTAGAAGCCAGCAGGTTGTGCAATATGGACATCATTTCACATGTACAGCAAGTAATATGCTTTGCGTTCCATGACAGTAAATTGTTAATGGAAACATGTCAAGAGGCAAAAAATCTCCGCAAAATTGTGACGCTGTTCTACCTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

31.02

Weight (kDa)

7.71

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43945 AT3G59870
fragaria_vesca	FvH4_1g00160 FvH4_1g00160 FvH4_1g00160 FvH4_1g00160
malus_domestica	MD00G1087500.v1.1 MD15G1143300.v1.1
prunus_persica	Prupe.7G269700_v2.0.a1 Prupe.7G269700_v2.0.a1
pyrus_communis	pycom15g12940 pycom290g00220
rosa_chinensis	RchiOBHm_Chr2g0084451
rosa_laevigata	RLG00000015619
rosa_multiflora	Rmu_co8449065.1_g000001 Rmu_sc0009404.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156050
rosa_rugosa	Rorug01G0454100 Rorug01G0454100 Rorug01G0454100 Rorug01G0454100
rosa_samantha	Rh2AG002200 Rh2BG001800 Rh2CG002100 Rh2DG002300
rosa_wichuraiana	Rw2G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	355, 687
AccB1I	GGYRCC	1 cut(s)	275
AciI	CCGC	4 cut(s)	172, 186, 680, 802
AclWI	GGATC	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	3 cut(s)	15, 523, 729
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflIII	ACRYGT	3 cut(s)	134, 724, 779
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	3 cut(s)	140, 621, 825
AluBI	AGCT	4 cut(s)	296, 353, 533, 597
AluI	AGCT	4 cut(s)	296, 353, 533, 597
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	1 cut(s)	398
ApaI	GGGCCC	1 cut(s)	402
ApeKI	GCWGC	4 cut(s)	6, 350, 530, 682
AspS9I	GGNCC	3 cut(s)	398, 399, 423
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	18, 362, 542, 669
BccI	CCATC	1 cut(s)	472
BciT130I	CCWGG	3 cut(s)	142, 623, 827
BclI	TGATCA	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	427
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	2 cut(s)	348, 368
BfuAI	ACCTGC	2 cut(s)	355, 687
BisI	GCNGC	5 cut(s)	7, 172, 351, 531, 683
BlsI	GCNGC	5 cut(s)	8, 173, 352, 532, 684
Bme1390I	CCNGG	4 cut(s)	142, 427, 623, 827
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	3 cut(s)	398, 399, 423
BmiI	GGNNCC	5 cut(s)	259, 277, 400, 424, 425
BmrFI	CCNGG	4 cut(s)	142, 427, 623, 827
BmrI	ACTGGG	1 cut(s)	5
BmsI	GCATC	2 cut(s)	454, 524
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	339, 597
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	482
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 62, 67, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	482
BseBI	CCWGG	3 cut(s)	142, 623, 827
BseCI	ATCGAT	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	5 cut(s)	70, 73, 97, 100, 103
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	4 cut(s)	18, 362, 542, 669
BshFI	GGCC	1 cut(s)	400
BshNI	GGYRCC	1 cut(s)	275
BshVI	ATCGAT	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	427
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	400
Bsp120I	GGGCCC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp1407I	TGTACA	1 cut(s)	727
Bsp143I	GATC	5 cut(s)	202, 221, 314, 404, 670
BspACI	CCGC	4 cut(s)	172, 186, 680, 802
BspANI	GGCC	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	220
BspLI	GGNNCC	5 cut(s)	259, 277, 400, 424, 425
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	2 cut(s)	355, 687
BspPI	GGATC	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	5 cut(s)	202, 221, 314, 404, 670
Bst2UI	CCWGG	3 cut(s)	142, 623, 827
Bst4CI	ACNGT	2 cut(s)	580, 761
Bst6I	CTCTTC	1 cut(s)	193
BstAPI	GCANNNNNTGC	1 cut(s)	702
BstAUI	TGTACA	1 cut(s)	727
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	1 cut(s)	467
BstKTI	GATC	5 cut(s)	205, 224, 317, 407, 673
BstMBI	GATC	5 cut(s)	202, 221, 314, 404, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 397, 554, 702
BstNI	CCWGG	3 cut(s)	142, 623, 827
BstNSI	RCATGY	3 cut(s)	138, 728, 783
BstSCI	CCNGG	4 cut(s)	140, 425, 621, 825
BstSFI	CTRYAG	2 cut(s)	348, 368
BstSLI	GKGCMC	1 cut(s)	402
BstV1I	GCAGC	4 cut(s)	18, 362, 542, 669
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	400
BsuTUI	ATCGAT	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	491
BveI	ACCTGC	2 cut(s)	355, 687
Cac8I	GCNNGC	1 cut(s)	694
Cfr13I	GGNCC	3 cut(s)	398, 399, 423
ClaI	ATCGAT	1 cut(s)	220
CseI	GACGC	1 cut(s)	823
Csp6I	GTAC	3 cut(s)	14, 522, 728
CviAII	CATG	6 cut(s)	135, 244, 442, 725, 755, 780
CviQI	GTAC	3 cut(s)	14, 522, 728
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	5 cut(s)	204, 223, 316, 406, 672
DpnII	GATC	5 cut(s)	202, 221, 314, 404, 670
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	2 cut(s)	398, 423
EcoRII	CCWGG	3 cut(s)	140, 621, 825
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	6 cut(s)	138, 247, 445, 728, 758, 783
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	6 cut(s)	134, 243, 441, 724, 754, 779
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	5 cut(s)	7, 172, 351, 531, 683
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	5 cut(s)	7, 172, 351, 531, 683
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	5 cut(s)	7, 172, 351, 531, 683
GsuI	CTGGAG	2 cut(s)	339, 597
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	1 cut(s)	427
HgaI	GACGC	1 cut(s)	823
Hin1II	CATG	6 cut(s)	138, 247, 445, 728, 758, 783
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	3 cut(s)	39, 262, 337
Hpy188III	TCNNGA	6 cut(s)	206, 318, 449, 614, 643, 785
HpyAV	CCTTC	2 cut(s)	112, 305
HpyCH4III	ACNGT	2 cut(s)	580, 761
HpyCH4V	TGCA	4 cut(s)	350, 445, 530, 705
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 397, 554, 702
HpyF3I	CTNAG	1 cut(s)	467
Hsp92II	CATG	6 cut(s)	138, 247, 445, 728, 758, 783
KflI	GGGWCCC	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	5 cut(s)	202, 221, 314, 404, 670
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	4 cut(s)	18, 362, 542, 669
LweI	GCATC	2 cut(s)	454, 524
MaeI	CTAG	1 cut(s)	686
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	5 cut(s)	204, 223, 316, 406, 672
MboI	GATC	5 cut(s)	202, 221, 314, 404, 670
MboII	GAAGA	3 cut(s)	210, 242, 278
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	4 cut(s)	408, 626, 764, 807
Mph1103I	ATGCAT	1 cut(s)	447
MseI	TTAA	4 cut(s)	551, 599, 770, 832
MspA1I	CMGCKG	3 cut(s)	353, 533, 682
MspI	CCGG	1 cut(s)	427
MspR9I	CCNGG	4 cut(s)	142, 427, 623, 827
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	3 cut(s)	142, 623, 827
MwoI	GCNNNNNNNGC	4 cut(s)	31, 397, 554, 702
NciI	CCSGG	1 cut(s)	427
NdeII	GATC	5 cut(s)	202, 221, 314, 404, 670
NlaIII	CATG	6 cut(s)	138, 247, 445, 728, 758, 783
NlaIV	GGNNCC	5 cut(s)	259, 277, 400, 424, 425
NmuCI	GTSAC	1 cut(s)	811
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	3 cut(s)	138, 728, 783
PciI	ACATGT	3 cut(s)	134, 724, 779
PfeI	GAWTC	1 cut(s)	438
PkrI	GCNGC	5 cut(s)	8, 173, 352, 532, 684
PpuMI	RGGWCCY	1 cut(s)	423
PscI	ACATGT	3 cut(s)	134, 724, 779
Psp5II	RGGWCCY	1 cut(s)	423
Psp6I	CCWGG	3 cut(s)	140, 621, 825
PspGI	CCWGG	3 cut(s)	140, 621, 825
PspN4I	GGNNCC	5 cut(s)	259, 277, 400, 424, 425
PspOMI	GGGCCC	1 cut(s)	398
PspPI	GGNCC	3 cut(s)	398, 399, 423
PspPPI	RGGWCCY	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	314
PvuII	CAGCTG	2 cut(s)	353, 533
RsaI	GTAC	3 cut(s)	15, 523, 729
RsaNI	GTAC	3 cut(s)	14, 522, 728
SaqAI	TTAA	4 cut(s)	551, 599, 770, 832
SatI	GCNGC	5 cut(s)	7, 172, 351, 531, 683
Sau3AI	GATC	5 cut(s)	202, 221, 314, 404, 670
Sau96I	GGNCC	3 cut(s)	398, 399, 423
ScrFI	CCNGG	4 cut(s)	142, 427, 623, 827
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	2 cut(s)	454, 524
SfcI	CTRYAG	2 cut(s)	348, 368
SinI	GGWCC	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	4 cut(s)	408, 626, 764, 807
SsiI	CCGC	4 cut(s)	172, 186, 680, 802
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	4 cut(s)	140, 425, 621, 825
TaaI	ACNGT	2 cut(s)	580, 761
TaqI	TCGA	1 cut(s)	220
TasI	AATT	4 cut(s)	408, 626, 764, 807
TatI	WGTACW	1 cut(s)	727
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	4 cut(s)	551, 599, 770, 832
Tru9I	TTAA	4 cut(s)	551, 599, 770, 832
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	4 cut(s)	6, 350, 530, 682
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	3 cut(s)	260, 279, 430
VpaK11BI	GGWCC	1 cut(s)	423
XceI	RCATGY	3 cut(s)	138, 728, 783
XspI	CTAG	1 cut(s)	686
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.