Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Reverse (-)

18200316 .. 18202786

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCGGATCCATCTTCTCAAAACCCTAACCTCGCCACTCCCCCTCCTCCTTCTTCTCCTTCACCAACCCATCAAATTCAATCTGGAACCTCGGAATTATCGCCACCGTCTCGACCGCCTTGCTCTACCTTGTCCTTTCTCAAGACTGCTAACCGACCAAAACTCCGTGTGACATCTGAATTCGACAGCGATAGTCTCCTTTTCTTAAACAAAGTGTCTTGTAAGCTCTTCGATAACCTTGCCAAGCTTAAACTCTCGTTTCAGAACAATTCCCAGCGCGAGATTTCACAGCCTCAGGTCTCTTTTACTTCCAAACACGTTTCTGTTCTCTATGATGTCGAAGAGAAGAATACTTTCATTAAGAGCACTCTCGATGTTCACCCGCGTCTTCAGCTCCGAGCTCTTCATAATGTTAAGGCACAACAAGGAGAAGTTGCTATGGAGGCAAATCTGACTGAACCTGGCTACTCTCTGGAGCTTTCATCACCTGTGCCTATTGGTTACCCAAGAGCAACTCTTAAATTCCCACTTGGCGAAATTTCGTTACAAGAAAAAGATGAGGAGGAGGAGGAGAAGCAGAAAAGAACTTTATCTGTTAATGGGATCCTCAAACGTCAAGTTATGAATGGTGTTTGTACCGCTCTATACACAGATGAAGAGTTGAGGCTGAGATATGCTTATAAGGATGATGCATTGTCTTTCATCCCAAGTATTTCCCTTCCTTCCAATGCTGCATCATTTGCATTCAAACGGCGGTTTAGCCCTTCAGATAAGTTGAGCTATTGGTACAACTTTGATTCAAACATGTGGAGTGCTGTGTACAAACGCACATATGGTAAAGACTACAAATTAAAAGCTGGCTATGATTCTGATGTTCGCCTTGGCTGGGCATCTCTCTGGGTTGGTGATGAAGCTGGAAAAGTGAAAACGACACCAATGAAGATGAAAGTCCAGTTCATGCTTCAAGTTCCACAAGATGACATCAAATCATCAGTCTTGATGTTCCGAGTCAAGAAAAGATGGGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

38.83

Weight (kDa)

9.16

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
AccBSI	CCGCTC	1 cut(s)	641
AccII	CGCG	2 cut(s)	279, 385
AciI	CCGC	5 cut(s)	5, 116, 383, 639, 754
AclWI	GGATC	4 cut(s)	2, 15, 598, 611
AcsI	RAATTY	4 cut(s)	75, 179, 521, 537
AcuI	CTGAAG	2 cut(s)	374, 750
AfaI	GTAC	3 cut(s)	637, 788, 821
AfiI	CCNNNNNNNGG	1 cut(s)	886
AflIII	ACRYGT	2 cut(s)	316, 804
AgsI	TTSAA	4 cut(s)	80, 748, 801, 965
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	8 cut(s)	226, 247, 394, 401, 478, 780, 857, 914
AluI	AGCT	8 cut(s)	226, 247, 394, 401, 478, 780, 857, 914
Alw21I	GWGCWC	2 cut(s)	368, 403
Alw26I	GTCTC	3 cut(s)	114, 200, 304
AlwI	GGATC	4 cut(s)	2, 15, 598, 611
ApeKI	GCWGC	1 cut(s)	731
ApoI	RAATTY	4 cut(s)	75, 179, 521, 537
ArsI	GACNNNNNNTTYG	2 cut(s)	978, 1010
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	279
AsuHPI	GGTGA	4 cut(s)	54, 371, 477, 917
AxyI	CCTNAGG	1 cut(s)	294
BamHI	GGATCC	2 cut(s)	7, 603
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	2 cut(s)	368, 403
BbvI	GCAGC	1 cut(s)	718
BccI	CCATC	3 cut(s)	19, 78, 1014
BceAI	ACGGC	1 cut(s)	767
BcgI	CGANNNNNNTGC	4 cut(s)	102, 136, 221, 255
BciT130I	CCWGG	1 cut(s)	462
BcoDI	GTCTC	3 cut(s)	114, 200, 304
BisI	GCNGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	733
Bme1390I	CCNGG	1 cut(s)	462
BmiI	GGNNCC	3 cut(s)	9, 88, 605
BmrFI	CCNGG	1 cut(s)	462
BmsI	GCATC	3 cut(s)	679, 743, 899
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	90, 880
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse1I	ACTGG	1 cut(s)	952
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	90, 880
BseGI	GGATG	2 cut(s)	691, 702
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMII	CTCAG	2 cut(s)	308, 659
BseNI	ACTGG	1 cut(s)	952
BseRI	GAGGAG	5 cut(s)	36, 575, 578, 581, 584
BseXI	GCAGC	1 cut(s)	718
BseYI	CCCAGC	2 cut(s)	273, 885
Bsh1236I	CGCG	2 cut(s)	279, 385
Bsh1285I	CGRYCG	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	368, 403
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	3 cut(s)	114, 200, 304
BsmBI	CGTCTC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	743
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	368, 403
Bsp1407I	TGTACA	1 cut(s)	819
Bsp143I	GATC	2 cut(s)	7, 603
BspACI	CCGC	5 cut(s)	5, 116, 383, 639, 754
BspCNI	CTCAG	2 cut(s)	307, 660
BspFNI	CGCG	2 cut(s)	279, 385
BspLI	GGNNCC	3 cut(s)	9, 88, 605
BspPI	GGATC	4 cut(s)	2, 15, 598, 611
BspQI	GCTCTTC	2 cut(s)	233, 408
BspTNI	GGTCTC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	641
BsrGI	TGTACA	1 cut(s)	819
BsrI	ACTGG	1 cut(s)	952
BssECI	CCNNGG	2 cut(s)	90, 880
BssMI	GATC	2 cut(s)	7, 603
BssT1I	CCWWGG	1 cut(s)	880
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	4 cut(s)	233, 336, 408, 651
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	819
BstC8I	GCNNGC	1 cut(s)	859
BstDEI	CTNAG	2 cut(s)	294, 668
BstEII	GGTNACC	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	691, 702
BstFNI	CGCG	2 cut(s)	279, 385
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	2 cut(s)	10, 606
BstMAI	GTCTC	3 cut(s)	114, 200, 304
BstMBI	GATC	2 cut(s)	7, 603
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	3 cut(s)	391, 443, 740
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	808
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	460
BstUI	CGCG	2 cut(s)	279, 385
BstV1I	GCAGC	1 cut(s)	718
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	2 cut(s)	7, 603
BstYI	RGATCY	2 cut(s)	7, 603
Bsu36I	CCTNAGG	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	691, 702
Cac8I	GCNNGC	1 cut(s)	859
CfoI	GCGC	1 cut(s)	279
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	636, 787, 820
CviAII	CATG	2 cut(s)	805, 958
CviQI	GTAC	3 cut(s)	636, 787, 820
DdeI	CTNAG	2 cut(s)	294, 668
DpnI	GATC	2 cut(s)	9, 605
DpnII	GATC	2 cut(s)	7, 603
Eam1104I	CTCTTC	4 cut(s)	233, 336, 408, 651
EarI	CTCTTC	4 cut(s)	233, 336, 408, 651
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	880
Eco24I	GRGCYC	1 cut(s)	403
Eco31I	GGTCTC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	401
Eco57I	CTGAAG	2 cut(s)	374, 750
Eco81I	CCTNAGG	1 cut(s)	294
Eco91I	GGTNACC	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	401
EcoO65I	GGTNACC	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	880
EcoT22I	ATGCAT	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	880
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	2 cut(s)	808, 961
FatI	CATG	2 cut(s)	804, 957
FauI	CCCGC	1 cut(s)	390
FauNDI	CATATG	1 cut(s)	832
Fnu4HI	GCNGC	1 cut(s)	732
FokI	GGATG	2 cut(s)	689, 698
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	1 cut(s)	732
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	732
GsaI	CCCAGC	2 cut(s)	277, 889
GsuI	CTGGAG	1 cut(s)	494
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	2 cut(s)	808, 961
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	3 cut(s)	797, 866, 1008
HphI	GGTGA	4 cut(s)	54, 371, 477, 917
Hpy166II	GTNNAC	2 cut(s)	379, 820
Hpy188I	TCNGA	8 cut(s)	94, 178, 264, 398, 453, 769, 871, 1007
Hpy188III	TCNNGA	7 cut(s)	84, 111, 142, 371, 473, 997, 1012
Hpy8I	GTNNAC	2 cut(s)	379, 820
HpyAV	CCTTC	5 cut(s)	60, 69, 728, 732, 774
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	2 cut(s)	318, 613
HpyCH4V	TGCA	3 cut(s)	692, 734, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	391, 443, 740
HpyF3I	CTNAG	2 cut(s)	294, 668
HpySE526I	ACGT	2 cut(s)	318, 613
Hsp92II	CATG	2 cut(s)	808, 961
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	7, 603
LguI	GCTCTTC	2 cut(s)	233, 408
LmnI	GCTCC	2 cut(s)	399, 475
Lsp1109I	GCAGC	1 cut(s)	718
LweI	GCATC	3 cut(s)	679, 743, 899
MaeII	ACGT	2 cut(s)	318, 613
MaeIII	GTNAC	3 cut(s)	169, 500, 543
MalI	GATC	2 cut(s)	9, 605
MbiI	CCGCTC	1 cut(s)	641
MboI	GATC	2 cut(s)	7, 603
MboII	GAAGA	9 cut(s)	6, 45, 220, 353, 358, 380, 395, 668, 952
MflI	RGATCY	2 cut(s)	7, 603
MhlI	GDGCHC	2 cut(s)	368, 403
MluCI	AATT	7 cut(s)	75, 95, 179, 268, 521, 537, 848
MlyI	GAGTC	1 cut(s)	1017
Mph1103I	ATGCAT	1 cut(s)	694
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	7 cut(s)	206, 249, 360, 414, 519, 597, 851
MspR9I	CCNGG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	743
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	2 cut(s)	279, 385
MwoI	GCNNNNNNNGC	3 cut(s)	391, 443, 740
NdeI	CATATG	1 cut(s)	832
NdeII	GATC	2 cut(s)	7, 603
NlaIII	CATG	2 cut(s)	808, 961
NlaIV	GGNNCC	3 cut(s)	9, 88, 605
NmuCI	GTSAC	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	808
PciI	ACATGT	1 cut(s)	804
PciSI	GCTCTTC	2 cut(s)	233, 408
PctI	GAATGC	1 cut(s)	743
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	797, 866
PkrI	GCNGC	1 cut(s)	733
PleI	GAGTC	1 cut(s)	1016
PpsI	GAGTC	1 cut(s)	1016
PscI	ACATGT	1 cut(s)	804
PsiI	TTATAA	1 cut(s)	681
Psp124BI	GAGCTC	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	460
PspEI	GGTNACC	1 cut(s)	500
PspFI	CCCAGC	2 cut(s)	273, 885
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	3 cut(s)	9, 88, 605
PsuI	RGATCY	2 cut(s)	7, 603
RsaI	GTAC	3 cut(s)	637, 788, 821
RsaNI	GTAC	3 cut(s)	636, 787, 820
SacI	GAGCTC	1 cut(s)	403
SapI	GCTCTTC	2 cut(s)	233, 408
SaqAI	TTAA	7 cut(s)	206, 249, 360, 414, 519, 597, 851
SatI	GCNGC	1 cut(s)	732
Sau3AI	GATC	2 cut(s)	7, 603
SchI	GAGTC	1 cut(s)	1017
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	2 cut(s)	368, 403
SfaNI	GCATC	3 cut(s)	679, 743, 899
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	7 cut(s)	75, 95, 179, 268, 521, 537, 848
SsiI	CCGC	5 cut(s)	5, 116, 383, 639, 754
SstI	GAGCTC	1 cut(s)	403
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	880
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	2 cut(s)	321, 616
TaqI	TCGA	5 cut(s)	112, 183, 231, 339, 372
TasI	AATT	7 cut(s)	75, 95, 179, 268, 521, 537, 848
TatI	WGTACW	1 cut(s)	819
TfiI	GAWTC	2 cut(s)	797, 866
Tru1I	TTAA	7 cut(s)	206, 249, 360, 414, 519, 597, 851
Tru9I	TTAA	7 cut(s)	206, 249, 360, 414, 519, 597, 851
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	731
Tsp45I	GTSAC	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	155
XapI	RAATTY	4 cut(s)	75, 179, 521, 537
XceI	RCATGY	1 cut(s)	808
XmnI	GAANNNNTTC	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.