Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Forward (+)

18888889 .. 18889191

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1202400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGGTTTGCCAAAAGCTACCCTAAAGTTTCCCCTAGGTGAAGTTTCAATCGAGGAGAAAGAAGAAAAGGAGAAGCAGAATATGTTATCAATTAATGGAATAGTAAAAGGTTGTATTTTAAACGGGTTGTGCACTGCTCATTATGCAGATGAAGATTTGAAGTTGCGGTATTTATACAAGGACGAAGAGATGTCTTTGATTCCAACCATTTGTCTGCCTTCGAATGCATTGTCATTTGCTTTCAAGCGTCAGTTTGGTCCTTCTGACAAGTTGAGGAATCTCGACTTCTTGTGGTATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.43

Weight (kDa)

5.81

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	48, 160, 244
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	134
Alw44I	GTGCAC	1 cut(s)	130
ApaLI	GTGCAC	1 cut(s)	130
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AseI	ATTAAT	1 cut(s)	93
AspA2I	CCTAGG	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	50
AsuII	TTCGAA	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	257
AvrII	CCTAGG	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	35
BlnI	CCTAGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	229
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	134
BspACI	CCGC	1 cut(s)	166
BspT104I	TTCGAA	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	34
BssNAI	GTATAC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	34
Bst1107I	GTATAC	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	221
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	134
BstZ17I	GTATAC	1 cut(s)	297
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	236
CviJI	RGCY	1 cut(s)	17
CviKI_1	RGCY	1 cut(s)	17
DraI	TTTAAA	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	34
FaiI	YATR	4 cut(s)	83, 144, 175, 297
FblI	GTMKAC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	236
HinfI	GANTC	2 cut(s)	199, 277
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	132, 297
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	132, 297
HpyAV	CCTTC	2 cut(s)	228, 270
HpyCH4V	TGCA	3 cut(s)	132, 146, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
MaeI	CTAG	1 cut(s)	35
MboII	GAAGA	3 cut(s)	74, 164, 197
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	2 cut(s)	46, 267
Mph1103I	ATGCAT	1 cut(s)	229
MseI	TTAA	2 cut(s)	93, 119
Mva1269I	GAATGC	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	143
NsiI	ATGCAT	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	221
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	199, 277
PshBI	ATTAAT	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	93, 119
Sau96I	GGNCC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	4 cut(s)	19, 40, 112, 302
SfuI	TTCGAA	1 cut(s)	221
SgeI	CNNG	7 cut(s)	47, 64, 136, 190, 256, 280, 293
SinI	GGWCC	1 cut(s)	257
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	34
TaqI	TCGA	3 cut(s)	51, 221, 282
TasI	AATT	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	199, 277
Tru1I	TTAA	2 cut(s)	93, 119
Tru9I	TTAA	2 cut(s)	93, 119
TscAI	CASTG	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	139
VneI	GTGCAC	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	257
VspI	ATTAAT	1 cut(s)	93
XmaJI	CCTAGG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.