Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Reverse (-)

20901509 .. 20906580

Gene Structure 5072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTTCCGTTCCTCAATTCGCTCTCTCTCTCTAGCTCTCTCCCTCTCTCTCGCCCGAGCTCCGAGTCATATCTGCCGTCTCGACTACCGCCTACGTCGACAGAGACCCAGATATAGCCAAGCACGCCCAGAAGGGTCAAATTGCTGCAACTGGAGTTCTCTCGGAGCTTCAAATCGTCGGCTGCTGCTGCTTCTACAGCACTTCTGCTGGTCAGCTCCGACTCCGATTCCGAATCCCATACTGAGCTGCTTCTCCTCCAAAATTAAAAGGCCTTCGGTTCGAGTGACTTCGGAGTTCGACAACGACTCGTCGGTCTTCTTCCACAAGGTGTCTTGCAAGCTGTTCGATAGCGTGGCTAAGCTGAAGGTGTTGTTCAACAACAACCACAAGGGTGCGGTGTCTCCGCCTCAGGTGTCATTTATCTCTCAGTACCTCTCCATTCACTACAACTTCGAAGATCAGTCTACCCTCCCCAACAGCTCCGTCGATGTTGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGCAACTATGGTTGCGAAGCTTGCTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCATTCTGCTGGTTTGCCAAAAGCTACCCTTAAATTCCCCCTTGGTGAAGTTACTTTGGAGGAAAAAGAAGAGGAGGAGACGAACAAAATGTTGTCTATAAATGGCATTGTTAAAGGCCAACTTTTGAACGGGCTCTGCACTGCTCACTATGTGGATGATGAGTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.83

Weight (kDa)

9.28

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccI	GTMKAC	2 cut(s)	97, 464
AciI	CCGC	3 cut(s)	88, 395, 404
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	1 cut(s)	383
AdeI	CACNNNGTG	2 cut(s)	328, 757
AfaI	GTAC	1 cut(s)	431
AgsI	TTSAA	5 cut(s)	171, 376, 590, 733, 772
AjnI	CCWGG	1 cut(s)	574
AleI	CACNNNNGTG	1 cut(s)	390
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	4 cut(s)	83, 97, 405, 677
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	2 cut(s)	269, 721
ApeKI	GCWGC	5 cut(s)	144, 181, 184, 187, 246
ApoI	RAATTY	1 cut(s)	638
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	662
AsuII	TTCGAA	1 cut(s)	453
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	494
AxyI	CCTNAGG	1 cut(s)	408
BanII	GRGCYC	2 cut(s)	61, 741
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	5 cut(s)	131, 168, 171, 174, 233
BceAI	ACGGC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	4 cut(s)	83, 97, 405, 677
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	194
BisI	GCNGC	5 cut(s)	145, 182, 185, 188, 247
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	5 cut(s)	146, 183, 186, 189, 248
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	494
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	172
Bpu1102I	GCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	574, 646
Bse1I	ACTGG	1 cut(s)	155
Bse21I	CCTNAGG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	574, 646
BseGI	GGATG	1 cut(s)	766
BseMII	CTCAG	3 cut(s)	233, 422, 440
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	3 cut(s)	244, 692, 695
BseXI	GCAGC	5 cut(s)	131, 168, 171, 174, 233
BsgI	GTGCAG	1 cut(s)	727
BshFI	GGCC	2 cut(s)	271, 723
BsiHKAI	GWGCWC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	480
BsmAI	GTCTC	4 cut(s)	83, 97, 405, 677
BsmBI	CGTCTC	2 cut(s)	83, 677
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	271, 723
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	54
Bsp119I	TTCGAA	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	61, 741
Bsp143I	GATC	2 cut(s)	457, 523
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	3 cut(s)	88, 395, 404
BspANI	GGCC	2 cut(s)	271, 723
BspCNI	CTCAG	3 cut(s)	234, 421, 439
BspLI	GGNNCC	1 cut(s)	496
BspT104I	TTCGAA	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	574, 646
BssMI	GATC	2 cut(s)	457, 523
BssT1I	CCWWGG	1 cut(s)	646
Bst2UI	CCWGG	1 cut(s)	576
Bst6I	CTCTTC	2 cut(s)	601, 669
BstBI	TTCGAA	1 cut(s)	453
BstC8I	GCNNGC	3 cut(s)	124, 338, 567
BstDEI	CTNAG	4 cut(s)	242, 357, 408, 426
BstF5I	GGATG	1 cut(s)	766
BstKTI	GATC	2 cut(s)	460, 526
BstMAI	GTCTC	4 cut(s)	83, 97, 405, 677
BstMBI	GATC	2 cut(s)	457, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 187, 196, 566
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	1 cut(s)	194
BstV1I	GCAGC	5 cut(s)	131, 168, 171, 174, 233
BstV2I	GAAGAC	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	614
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	271, 723
BtsCI	GGATG	1 cut(s)	766
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	1 cut(s)	744
Cac8I	GCNNGC	3 cut(s)	124, 338, 567
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	1 cut(s)	521
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	4 cut(s)	242, 357, 408, 426
DpnI	GATC	2 cut(s)	459, 525
DpnII	GATC	2 cut(s)	457, 523
DraIII	CACNNNGTG	2 cut(s)	328, 757
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	601, 669
EarI	CTCTTC	2 cut(s)	601, 669
EciI	GGCGGA	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	271
Eco24I	GRGCYC	2 cut(s)	61, 741
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	383
Eco81I	CCTNAGG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	646
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	2 cut(s)	61, 741
ErhI	CCWWGG	1 cut(s)	646
Esp3I	CGTCTC	2 cut(s)	83, 677
FaeI	CATG	1 cut(s)	524
FaiI	YATR	8 cut(s)	69, 114, 239, 522, 554, 582, 704, 756
FalI	AAGNNNNNCTT	4 cut(s)	618, 650, 711, 743
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	1 cut(s)	520
FblI	GTMKAC	2 cut(s)	97, 464
Fnu4HI	GCNGC	5 cut(s)	145, 182, 185, 188, 247
FokI	GGATG	1 cut(s)	773
FriOI	GRGCYC	2 cut(s)	61, 741
Fsp4HI	GCNGC	5 cut(s)	145, 182, 185, 188, 247
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	5 cut(s)	145, 182, 185, 188, 247
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	271, 723
Hin1II	CATG	1 cut(s)	524
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	5 cut(s)	64, 220, 226, 232, 305
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	2 cut(s)	98, 465
Hpy188I	TCNGA	6 cut(s)	63, 164, 219, 225, 231, 292
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	2 cut(s)	98, 465
Hpy99I	CGWCG	4 cut(s)	99, 180, 313, 488
HpyAV	CCTTC	3 cut(s)	125, 282, 358
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	5 cut(s)	147, 336, 505, 584, 744
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 187, 196, 566
HpyF3I	CTNAG	4 cut(s)	242, 357, 408, 426
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	524
Kzo9I	GATC	2 cut(s)	457, 523
LmnI	GCTCC	4 cut(s)	64, 164, 220, 485
LpnPI	CCDG	9 cut(s)	121, 136, 141, 193, 395, 511, 561, 588, 600
Lsp1109I	GCAGC	5 cut(s)	131, 168, 171, 174, 233
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	283, 655
MalI	GATC	2 cut(s)	459, 525
MboI	GATC	2 cut(s)	457, 523
MboII	GAAGA	6 cut(s)	307, 310, 467, 588, 591, 686
MhlI	GDGCHC	2 cut(s)	61, 741
MluCI	AATT	5 cut(s)	15, 139, 261, 506, 638
MlyI	GAGTC	3 cut(s)	73, 214, 299
MmeI	TCCRAC	1 cut(s)	242
Mph1103I	ATGCAT	1 cut(s)	586
MseI	TTAA	3 cut(s)	264, 636, 717
MslI	CAYNNNNRTG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	4 cut(s)	123, 187, 196, 566
NdeII	GATC	2 cut(s)	457, 523
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	1 cut(s)	496
NmuCI	GTSAC	1 cut(s)	283
NsiI	ATGCAT	1 cut(s)	586
NspV	TTCGAA	1 cut(s)	453
OliI	CACNNNNGTG	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	226, 232
PkrI	GCNGC	5 cut(s)	146, 183, 186, 189, 248
PleI	GAGTC	3 cut(s)	72, 214, 299
PpsI	GAGTC	3 cut(s)	72, 214, 299
Psp124BI	GAGCTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	494
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	61
SalI	GTCGAC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	264, 636, 717
SatI	GCNGC	5 cut(s)	145, 182, 185, 188, 247
Sau3AI	GATC	2 cut(s)	457, 523
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	3 cut(s)	73, 214, 299
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	2 cut(s)	61, 741
SfcI	CTRYAG	1 cut(s)	194
SfuI	TTCGAA	1 cut(s)	453
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	5 cut(s)	15, 139, 261, 506, 638
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	3 cut(s)	88, 395, 404
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	61
StuI	AGGCCT	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	646
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	7 cut(s)	81, 97, 280, 297, 345, 453, 486
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	5 cut(s)	15, 139, 261, 506, 638
TfiI	GAWTC	2 cut(s)	226, 232
Tru1I	TTAA	3 cut(s)	264, 636, 717
Tru9I	TTAA	3 cut(s)	264, 636, 717
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	5 cut(s)	144, 181, 184, 187, 246
Tsp45I	GTSAC	1 cut(s)	283
TspGWI	ACGGA	2 cut(s)	472, 500
TspRI	CASTG	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	1 cut(s)	638
XmiI	GTMKAC	2 cut(s)	97, 464
XspI	CTAG	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.