Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Reverse (-)

220603 .. 223440

Gene Structure 2838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG002200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCAGAGTCAGCACTCCCACCACCACCCCCACCCACCCTTCCAAACCCTAACTACCCGGCCGATTCTCCACCACCACCGCCGCCGCCGCCAGCTCCGACTCCCATACTGAGCTGCTTGTCCTCCAAAATTAAAAGGCCTTCGGTTCGTGTGACTTCGGAGTTCGACAGCGACTCGTCGGTCTTCTTCCACAAGGTGTCTTGCAAGCTGTTGGATAGCCTGGCCAAGCTGAAGGTGTCGTTCAACAACGACCACAAGGGCGAGGTGTCTCCGCCTCACGTGTCATTTATCTCTCAGTACCTCTCCATTCACTACAACTTCGAAGATCAGTCTACCCTCCTCAACAGCTCCCTCGATGTTGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGCGACTATGGTTGCCAAGCTTGCTGAACCTGGATATGCAGTTCAACTCTCTTCTCCGTTCCCTTCTGCTGGTTTGCCAAAAGCTACCCTTAAATTCCCCCTTGGTGAAGTTACTTTGGAGGAAAAAGAAGAGGAGGAGACTAACAAAATGTTGTCTATTAATGGCATTGTTAAAGGCCAACTTTTGAACGGGCTCTGCACTGCTCAATATTTGGATGAGGAGTTGAAGTTACGATACTCATTCAAGGATGAGGAGTTGTCTTTTATCCCATCTATTTCTCTGCCTTCAAATGCATTGTCATTTGCTTTTAAGCGTCGCTTCGGTCCTTCAGACAAGTTGAGTTATTGGTACAATTTTGATTCCAACTACTGGAGTACGGTTTACAAGCACACATATGGCAAGGACCTAAAACTGAAAGCTGGTTATGATTCAGAGGTGCGTCTCGGCTGGGCATCTCTTTGGGTTGGGGATGAAGGTGGCAAAGCAAAGACAGCTCCATTGAAGATGAAAGTTCAATTCATGCTCCAAGTACCGCAAGATGACATTAGATCATCAGCCTTGATGTTCCGTGTTAAAAAGAGATGGGACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

37.37

Weight (kDa)

8.23

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	783
AccI	GTMKAC	1 cut(s)	332
AciI	CCGC	6 cut(s)	80, 83, 86, 89, 272, 947
AcoI	YGGCCR	2 cut(s)	60, 222
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	2 cut(s)	251, 726
AcvI	CACGTG	1 cut(s)	280
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	4 cut(s)	299, 764, 790, 945
AfiI	CCNNNNNNNGG	2 cut(s)	482, 783
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	8 cut(s)	244, 458, 601, 640, 658, 702, 916, 929
AjnI	CCWGG	2 cut(s)	219, 442
AloI	GAACNNNNNNTCC	2 cut(s)	438, 470
AluBI	AGCT	9 cut(s)	95, 114, 208, 229, 348, 433, 497, 833, 908
AluI	AGCT	9 cut(s)	95, 114, 208, 229, 348, 433, 497, 833, 908
Alw26I	GTCTC	3 cut(s)	273, 545, 860
AoxI	GGCC	4 cut(s)	60, 137, 222, 589
ApeKI	GCWGC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AseI	ATTAAT	1 cut(s)	573
AspS9I	GGNCC	3 cut(s)	362, 737, 817
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	530
AsuII	TTCGAA	1 cut(s)	321
AvaII	GGWCC	3 cut(s)	362, 737, 817
BalI	TGGCCA	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	609
BarI	GAAGNNNNNNTAC	2 cut(s)	632, 664
BbrPI	CACGTG	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	2 cut(s)	691, 990
BciT130I	CCWGG	2 cut(s)	221, 444
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	3 cut(s)	273, 545, 860
BisI	GCNGC	4 cut(s)	83, 86, 89, 115
BlsI	GCNGC	4 cut(s)	84, 87, 90, 116
Bme1390I	CCNGG	3 cut(s)	59, 221, 444
Bme18I	GGWCC	3 cut(s)	362, 737, 817
BmgT120I	GGNCC	3 cut(s)	362, 737, 817
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	3 cut(s)	59, 221, 444
BmsI	GCATC	1 cut(s)	875
BpiI	GAAGAC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	805
Bpu14I	TTCGAA	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 783
Bse1I	ACTGG	1 cut(s)	788
BseBI	CCWGG	2 cut(s)	221, 444
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	3 cut(s)	634, 667, 889
BseLI	CCNNNNNNNGG	2 cut(s)	482, 783
BseMII	CTCAG	2 cut(s)	101, 308
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	5 cut(s)	329, 560, 563, 647, 680
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	101
BseYI	CCCAGC	1 cut(s)	861
BsgI	GTGCAG	1 cut(s)	595
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	4 cut(s)	62, 139, 224, 591
BsiEI	CGRYCG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	482, 783
BsmAI	GTCTC	3 cut(s)	273, 545, 860
BsmBI	CGTCTC	1 cut(s)	860
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	4 cut(s)	62, 139, 224, 591
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	3 cut(s)	325, 391, 962
BspACI	CCGC	6 cut(s)	80, 83, 86, 89, 272, 947
BspANI	GGCC	4 cut(s)	62, 139, 224, 591
BspCNI	CTCAG	2 cut(s)	102, 307
BspLI	GGNNCC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	788
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	3 cut(s)	325, 391, 962
BssT1I	CCWWGG	1 cut(s)	514
Bst2UI	CCWGG	2 cut(s)	221, 444
Bst4CI	ACNGT	1 cut(s)	793
Bst6I	CTCTTC	2 cut(s)	469, 537
BstBAI	YACGTR	1 cut(s)	280
BstBI	TTCGAA	1 cut(s)	321
BstC8I	GCNNGC	3 cut(s)	93, 206, 435
BstDEI	CTNAG	2 cut(s)	110, 294
BstF5I	GGATG	3 cut(s)	634, 667, 889
BstKTI	GATC	3 cut(s)	328, 394, 965
BstMAI	GTCTC	3 cut(s)	273, 545, 860
BstMBI	GATC	3 cut(s)	325, 391, 962
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 88, 434, 905
BstNI	CCWGG	2 cut(s)	221, 444
BstSCI	CCNGG	3 cut(s)	57, 219, 442
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	175
BstZI	CGGCCG	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	62, 139, 224, 591
BtsCI	GGATG	3 cut(s)	634, 667, 889
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	3 cut(s)	93, 206, 435
Cfr13I	GGNCC	3 cut(s)	362, 737, 817
CseI	GACGC	2 cut(s)	716, 842
Csp6I	GTAC	4 cut(s)	298, 763, 789, 944
CviAII	CATG	2 cut(s)	389, 934
CviQI	GTAC	4 cut(s)	298, 763, 789, 944
DdeI	CTNAG	2 cut(s)	110, 294
DpnI	GATC	3 cut(s)	327, 393, 964
DpnII	GATC	3 cut(s)	325, 391, 962
DraIII	CACNNNGTG	1 cut(s)	196
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	2 cut(s)	60, 222
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	469, 537
EarI	CTCTTC	2 cut(s)	469, 537
EciI	GGCGGA	1 cut(s)	261
EclXI	CGGCCG	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	514
Eco147I	AGGCCT	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	609
Eco47I	GGWCC	3 cut(s)	362, 737, 817
Eco52I	CGGCCG	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	251, 726
Eco72I	CACGTG	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	817
EcoRII	CCWGG	2 cut(s)	219, 442
EcoT14I	CCWWGG	1 cut(s)	514
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	860
FaeI	CATG	2 cut(s)	392, 937
FalI	AAGNNNNNCTT	6 cut(s)	486, 518, 579, 611, 716, 748
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	2 cut(s)	388, 933
FauNDI	CATATG	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	4 cut(s)	83, 86, 89, 115
FokI	GGATG	3 cut(s)	641, 674, 896
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	4 cut(s)	83, 86, 89, 115
GluI	GCNGC	4 cut(s)	83, 86, 89, 115
GsaI	CCCAGC	1 cut(s)	865
GsuI	CTGGAG	1 cut(s)	805
HaeIII	GGCC	4 cut(s)	62, 139, 224, 591
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	2 cut(s)	716, 842
Hin1II	CATG	2 cut(s)	392, 937
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	6 cut(s)	8, 65, 100, 173, 773, 842
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	2 cut(s)	333, 796
Hpy188I	TCNGA	4 cut(s)	99, 160, 745, 847
Hpy8I	GTNNAC	2 cut(s)	333, 796
Hpy99I	CGWCG	2 cut(s)	181, 732
HpyAV	CCTTC	7 cut(s)	50, 150, 226, 486, 708, 750, 881
HpyCH4III	ACNGT	1 cut(s)	793
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	5 cut(s)	204, 373, 452, 612, 707
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 88, 434, 905
HpyF3I	CTNAG	2 cut(s)	110, 294
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	392, 937
Kzo9I	GATC	3 cut(s)	325, 391, 962
LmnI	GCTCC	4 cut(s)	100, 353, 913, 942
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	875
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	3 cut(s)	151, 523, 642
MalI	GATC	3 cut(s)	327, 393, 964
MboI	GATC	3 cut(s)	325, 391, 962
MboII	GAAGA	6 cut(s)	175, 178, 335, 456, 554, 928
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	5 cut(s)	129, 374, 506, 766, 929
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	3 cut(s)	17, 94, 167
MmeI	TCCRAC	3 cut(s)	122, 192, 801
Mox20I	TGGCCA	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	709
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	6 cut(s)	132, 504, 573, 585, 723, 987
MslI	CAYNNNNRTG	1 cut(s)	807
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	59, 221, 444
MvaI	CCWGG	2 cut(s)	221, 444
MwoI	GCNNNNNNNGC	4 cut(s)	11, 88, 434, 905
NciI	CCSGG	1 cut(s)	59
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	3 cut(s)	325, 391, 962
NlaIII	CATG	2 cut(s)	392, 937
NlaIV	GGNNCC	1 cut(s)	364
NmeAIII	GCCGAG	1 cut(s)	837
NmuCI	GTSAC	1 cut(s)	151
NsiI	ATGCAT	1 cut(s)	709
NspV	TTCGAA	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	65, 773, 842
PflMI	CCANNNNNTGG	1 cut(s)	783
PkrI	GCNGC	4 cut(s)	84, 87, 90, 116
PleI	GAGTC	3 cut(s)	16, 94, 167
PmaCI	CACGTG	1 cut(s)	280
PmlI	CACGTG	1 cut(s)	280
PpsI	GAGTC	3 cut(s)	16, 94, 167
Ppu21I	YACGTR	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	817
PshBI	ATTAAT	1 cut(s)	573
Psp5II	RGGWCCY	1 cut(s)	817
Psp6I	CCWGG	2 cut(s)	219, 442
PspCI	CACGTG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	2 cut(s)	219, 442
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	3 cut(s)	362, 737, 817
PspPPI	RGGWCCY	1 cut(s)	817
RsaI	GTAC	4 cut(s)	299, 764, 790, 945
RsaNI	GTAC	4 cut(s)	298, 763, 789, 944
RseI	CAYNNNNRTG	1 cut(s)	807
SaqAI	TTAA	6 cut(s)	132, 504, 573, 585, 723, 987
SatI	GCNGC	4 cut(s)	83, 86, 89, 115
Sau3AI	GATC	3 cut(s)	325, 391, 962
Sau96I	GGNCC	3 cut(s)	362, 737, 817
SchI	GAGTC	3 cut(s)	17, 94, 167
ScrFI	CCNGG	3 cut(s)	59, 221, 444
SduI	GDGCHC	1 cut(s)	609
SfaNI	GCATC	1 cut(s)	875
SfuI	TTCGAA	1 cut(s)	321
SinI	GGWCC	3 cut(s)	362, 737, 817
SmiMI	CAYNNNNRTG	1 cut(s)	807
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	5 cut(s)	129, 374, 506, 766, 929
SseBI	AGGCCT	1 cut(s)	139
SsiI	CCGC	6 cut(s)	80, 83, 86, 89, 272, 947
SspI	AATATT	1 cut(s)	623
StuI	AGGCCT	1 cut(s)	139
StyD4I	CCNGG	3 cut(s)	57, 219, 442
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	1 cut(s)	793
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	3 cut(s)	165, 321, 354
TaqII	GACCGA	2 cut(s)	169, 725
TasI	AATT	5 cut(s)	129, 374, 506, 766, 929
TauI	GCSGC	3 cut(s)	85, 88, 91
TfiI	GAWTC	3 cut(s)	65, 773, 842
Tru1I	TTAA	6 cut(s)	132, 504, 573, 585, 723, 987
Tru9I	TTAA	6 cut(s)	132, 504, 573, 585, 723, 987
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	900, 922, 935
TspGWI	ACGGA	3 cut(s)	368, 459, 971
TspRI	CASTG	1 cut(s)	619
Van91I	CCANNNNNTGG	1 cut(s)	783
VpaK11BI	GGWCC	3 cut(s)	362, 737, 817
VspI	ATTAAT	1 cut(s)	573
XapI	RAATTY	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.