Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00993

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Reverse (-)

20707 .. 25089

Gene Structure 4383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCCTCTGAACTACTTGGGTTTCAGTTCTTGCAAGTTGTTGGATAGCCTGGCCAAGCTGAAGGTGTCGTTCAACAACGACCACAAGGGCGAGGTGTCTCCGCCTCATGTGTCATTTATCTCTCAATACCTCTCCATTCACTACAACTTCGAAGATCAGTCTACCCTCCTCAACAGCTCCGTCGATGTTGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGAGACTATGGTTGCCAAGCTTGCTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCCTTCTACTAGTTTGCCAAAAGCTACCCTTAAATTCCCCCTTGGTGAAGTTACTTTGGAGGAAAAAGAAGAGGAGGAGACGAACAAAATGTTGTCTATAAATGGCATTGTTAAAGGCCAACTTTTGAACGGGCTATGCACTGCTCACTATGTGGATGAGGAGTTGAAGTTACGATACTCATTCAAGGATGAGGAGTTGTCTTTTATCCCATCTATTTCTCTGCCTTCAAATGCATTGTCATTTGCTTTTAAGCATCGCTTCGGTCCTTCAGACAAGTTGAGGTTATACTTTTTGTATAAACAATATGAATTACATGCTTTTCTTATGGTATTTGAGCATTCTTATGGTACTCCTTTTGTAAATGAAAGATTACCTTTACACAATCTATTTTGTGAATTTACATTCCCTCGTGATAATATCATAAAAGAAAAACTGGGGTACAGTTTCAAAAGGATAATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

29.19

Weight (kDa)

6.31

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	161
AciI	CCGC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	2 cut(s)	335, 698
AcuI	CTGAAG	2 cut(s)	80, 555
AdeI	CACNNNGTG	1 cut(s)	454
AfaI	GTAC	2 cut(s)	652, 743
AgsI	TTSAA	7 cut(s)	73, 287, 430, 469, 487, 531, 751
AhlI	ACTAGT	1 cut(s)	311
AjnI	CCWGG	2 cut(s)	48, 271
AluBI	AGCT	4 cut(s)	58, 177, 262, 326
AluI	AGCT	4 cut(s)	58, 177, 262, 326
Alw26I	GTCTC	3 cut(s)	102, 239, 374
AoxI	GGCC	2 cut(s)	51, 418
ApoI	RAATTY	2 cut(s)	335, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
AspS9I	GGNCC	2 cut(s)	191, 566
AsuHPI	GGTGA	1 cut(s)	359
AsuII	TTCGAA	1 cut(s)	150
AvaII	GGWCC	2 cut(s)	191, 566
BalI	TGGCCA	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	461, 493
BauI	CACGAG	1 cut(s)	711
BccI	CCATC	1 cut(s)	520
BciT130I	CCWGG	2 cut(s)	50, 273
BcoDI	GTCTC	3 cut(s)	102, 239, 374
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	50, 273
Bme18I	GGWCC	2 cut(s)	191, 566
BmgT120I	GGNCC	2 cut(s)	191, 566
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	50, 273
BmrI	ACTGGG	1 cut(s)	746
BmsI	GCATC	1 cut(s)	565
BmuI	ACTGGG	1 cut(s)	746
Bpu14I	TTCGAA	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	271, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bse1I	ACTGG	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	50, 273
BseDI	CCNNGG	2 cut(s)	271, 343
BseGI	GGATG	2 cut(s)	463, 496
BseNI	ACTGG	1 cut(s)	741
BseRI	GAGGAG	6 cut(s)	158, 257, 389, 392, 476, 509
BshFI	GGCC	2 cut(s)	53, 420
BslFI	GGGAC	1 cut(s)	177
BsmAI	GTCTC	3 cut(s)	102, 239, 374
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	2 cut(s)	53, 420
Bsp119I	TTCGAA	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	154, 220
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	2 cut(s)	53, 420
BspLI	GGNNCC	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	741
BssECI	CCNNGG	2 cut(s)	271, 343
BssMI	GATC	2 cut(s)	154, 220
BssSI	CACGAG	1 cut(s)	711
BssT1I	CCWWGG	1 cut(s)	343
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	2 cut(s)	50, 273
Bst4CI	ACNGT	1 cut(s)	746
Bst6I	CTCTTC	2 cut(s)	298, 366
BstBI	TTCGAA	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	463, 496
BstKTI	GATC	2 cut(s)	157, 223
BstMAI	GTCTC	3 cut(s)	102, 239, 374
BstMBI	GATC	2 cut(s)	154, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	50, 273
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	48, 271
BsuRI	GGCC	2 cut(s)	53, 420
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	2 cut(s)	463, 496
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	264
Cfr13I	GGNCC	2 cut(s)	191, 566
Csp6I	GTAC	2 cut(s)	651, 742
CviAII	CATG	4 cut(s)	107, 218, 617, 763
CviJI	RGCY	8 cut(s)	48, 53, 58, 177, 262, 326, 420, 436
CviKI_1	RGCY	8 cut(s)	48, 53, 58, 177, 262, 326, 420, 436
CviQI	GTAC	2 cut(s)	651, 742
DpnI	GATC	2 cut(s)	156, 222
DpnII	GATC	2 cut(s)	154, 220
DraIII	CACNNNGTG	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	298, 366
EarI	CTCTTC	2 cut(s)	298, 366
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	191, 566
Eco57I	CTGAAG	2 cut(s)	80, 555
EcoRII	CCWGG	2 cut(s)	48, 271
EcoT14I	CCWWGG	1 cut(s)	343
EcoT22I	ATGCAT	2 cut(s)	283, 538
ErhI	CCWWGG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	4 cut(s)	110, 221, 620, 766
FalI	AAGNNNNNCTT	8 cut(s)	315, 347, 408, 440, 545, 577, 661, 693
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	4 cut(s)	106, 217, 616, 762
FblI	GTMKAC	1 cut(s)	161
FokI	GGATG	2 cut(s)	470, 503
FspBI	CTAG	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	53, 420
Hin1II	CATG	4 cut(s)	110, 221, 620, 766
HindIII	AAGCTT	1 cut(s)	260
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	9, 574
Hpy188III	TCNNGA	1 cut(s)	713
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	55, 315, 537, 579
HpyCH4III	ACNGT	1 cut(s)	746
HpyCH4V	TGCA	5 cut(s)	33, 202, 281, 441, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	110, 221, 620, 766
Kzo9I	GATC	2 cut(s)	154, 220
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	6 cut(s)	35, 62, 208, 258, 285, 722
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	352, 471
MalI	GATC	2 cut(s)	156, 222
MboI	GATC	2 cut(s)	154, 220
MboII	GAAGA	4 cut(s)	164, 285, 288, 383
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	4 cut(s)	203, 335, 611, 698
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	21
Mox20I	TGGCCA	1 cut(s)	53
Mph1103I	ATGCAT	2 cut(s)	283, 538
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	3 cut(s)	333, 414, 552
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	50, 273
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	2 cut(s)	50, 273
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	2 cut(s)	154, 220
NlaIII	CATG	4 cut(s)	110, 221, 620, 766
NlaIV	GGNNCC	1 cut(s)	193
NsiI	ATGCAT	2 cut(s)	283, 538
NspI	RCATGY	1 cut(s)	620
NspV	TTCGAA	1 cut(s)	150
PctI	GAATGC	1 cut(s)	640
Psp6I	CCWGG	2 cut(s)	48, 271
PspGI	CCWGG	2 cut(s)	48, 271
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	191, 566
RsaI	GTAC	2 cut(s)	652, 743
RsaNI	GTAC	2 cut(s)	651, 742
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	333, 414, 552
Sau3AI	GATC	2 cut(s)	154, 220
Sau96I	GGNCC	2 cut(s)	191, 566
ScrFI	CCNGG	2 cut(s)	50, 273
SetI	ASST	9 cut(s)	60, 66, 96, 132, 179, 264, 328, 587, 679
SfaNI	GCATC	1 cut(s)	565
SfuI	TTCGAA	1 cut(s)	150
SinI	GGWCC	2 cut(s)	191, 566
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	4 cut(s)	203, 335, 611, 698
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	48, 271
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	746
TaqI	TCGA	2 cut(s)	150, 183
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	4 cut(s)	203, 335, 611, 698
Tru1I	TTAA	3 cut(s)	333, 414, 552
Tru9I	TTAA	3 cut(s)	333, 414, 552
TscAI	CASTG	1 cut(s)	448
TspDTI	ATGAA	2 cut(s)	624, 681
TspGWI	ACGGA	2 cut(s)	169, 197
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	2 cut(s)	191, 566
XapI	RAATTY	2 cut(s)	335, 698
XceI	RCATGY	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	161
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	2 cut(s)	283, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.