Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Reverse (-)

171470 .. 174277

Gene Structure 2808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG002400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCAGAGTCAGCACCACCACCCCCAACCACCCTTCCAAACCCTAACTACCCGGCCGATTCTCCACCACCACCAGCGCCGCCGCCGCCAGCTCCGACTCCCATACTGAGCTGCTTGTCCTCCAAAATTAAAAGGCCTTCGGTTCGAGTGACTTCGGAGTTCGACAGCGACTCGTCGGTCTTCTTCCACAAGGTGTCTTGCAAGCTGTTGGATAGCCTGGCCAAGCTGAAGGTGTCGTTCAACAACGACCACAAGGGCGAGGTGTCTCCGCCTCACGTGTCATTTATCTCTCAGTACCTCTCCATTCACTACAACTTCGAAGATCAGTCTACCCTCCTCAACAGCTCCCTCGATGTTGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGCGACTGTGGTTGCCAAGCTTGCTGACCCTGGATATGCAGTTCAACTCTCTTCTCCTTTCCCTTCTGCTGGTTTGCCAAAAGCTACCCTTAAATTCCCCCTTGGTGAAGTTACTTTGGAGGAAAAAGAAGAGGAGGAGACTAACAAAATGTTGTCTATTAATGGCATTGTTAAAGGCCAACTTTTGAACGGGCTCTGCACTGCTCAATATTTGGATGAGGAGTTGAAGTTACGATACTCATTCAAGGATGAGGAGTTGTCTTTTATCCCATCTATTTCTCTGCCTTCAAATGCATTGTCATTTGCTTTTAAGCGTCGCTTCGGTCCTTCAGACAAGTTGAGTTATTGGTACAATTTTGATTCCAACTACTGGAGTACGGTTTACAAGCACACATATGGCAAGGACCTAAAACTGAAAGCTGGTTATGATTCAGAGGTGCGTCTTGGCTGGGCATCTCTTTGGGTTGGGGATGAAGGCGGCAAAGCAAAGACAGCTCCATTGAAGATGAAAGTTCAATTCATGCTCCAAGTACCGCAAGATGACATTAGATCATCAGCCTTGATGTTCCGTGTTAAAAAGAGATGGGACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

37.19

Weight (kDa)

8.23

Isoelectric Point (pI)

57.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	780
AccI	GTMKAC	1 cut(s)	329
AciI	CCGC	6 cut(s)	80, 83, 86, 269, 888, 944
AcoI	YGGCCR	2 cut(s)	54, 219
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	2 cut(s)	248, 723
AcvI	CACGTG	1 cut(s)	277
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	4 cut(s)	296, 761, 787, 942
AfiI	CCNNNNNNNGG	2 cut(s)	479, 780
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	8 cut(s)	241, 455, 598, 637, 655, 699, 913, 926
AjnI	CCWGG	2 cut(s)	216, 439
AloI	GAACNNNNNNTCC	2 cut(s)	435, 467
AluBI	AGCT	9 cut(s)	92, 111, 205, 226, 345, 430, 494, 830, 905
AluI	AGCT	9 cut(s)	92, 111, 205, 226, 345, 430, 494, 830, 905
Alw26I	GTCTC	2 cut(s)	270, 542
AoxI	GGCC	4 cut(s)	54, 134, 219, 586
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	692, 724
AseI	ATTAAT	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	359, 734, 814
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	527
AsuII	TTCGAA	1 cut(s)	318
AvaII	GGWCC	3 cut(s)	359, 734, 814
BalI	TGGCCA	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	606
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BbrPI	CACGTG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	688, 987
BciT130I	CCWGG	2 cut(s)	218, 441
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	270, 542
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	5 cut(s)	80, 83, 86, 112, 889
BlsI	GCNGC	5 cut(s)	81, 84, 87, 113, 890
Bme1390I	CCNGG	3 cut(s)	53, 218, 441
Bme18I	GGWCC	3 cut(s)	359, 734, 814
BmgT120I	GGNCC	3 cut(s)	359, 734, 814
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	3 cut(s)	53, 218, 441
BmsI	GCATC	1 cut(s)	872
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	802
Bpu14I	TTCGAA	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	439, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 780
Bse1I	ACTGG	1 cut(s)	785
BseBI	CCWGG	2 cut(s)	218, 441
BseDI	CCNNGG	2 cut(s)	439, 511
BseGI	GGATG	3 cut(s)	631, 664, 886
BseLI	CCNNNNNNNGG	2 cut(s)	479, 780
BseMII	CTCAG	2 cut(s)	98, 305
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	5 cut(s)	326, 557, 560, 644, 677
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	858
BsgI	GTGCAG	1 cut(s)	592
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	4 cut(s)	56, 136, 221, 588
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	479, 780
BsmAI	GTCTC	2 cut(s)	270, 542
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	4 cut(s)	56, 136, 221, 588
Bsp119I	TTCGAA	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp143I	GATC	3 cut(s)	322, 388, 959
BspACI	CCGC	6 cut(s)	80, 83, 86, 269, 888, 944
BspANI	GGCC	4 cut(s)	56, 136, 221, 588
BspCNI	CTCAG	2 cut(s)	99, 304
BspLI	GGNNCC	1 cut(s)	361
BspT104I	TTCGAA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	2 cut(s)	439, 511
BssMI	GATC	3 cut(s)	322, 388, 959
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	2 cut(s)	218, 441
Bst4CI	ACNGT	2 cut(s)	418, 790
Bst6I	CTCTTC	2 cut(s)	466, 534
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	318
BstC8I	GCNNGC	3 cut(s)	90, 203, 432
BstDEI	CTNAG	2 cut(s)	107, 291
BstF5I	GGATG	3 cut(s)	631, 664, 886
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	3 cut(s)	325, 391, 962
BstMAI	GTCTC	2 cut(s)	270, 542
BstMBI	GATC	3 cut(s)	322, 388, 959
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 85, 431, 902
BstNI	CCWGG	2 cut(s)	218, 441
BstSCI	CCNGG	3 cut(s)	51, 216, 439
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	172
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	4 cut(s)	56, 136, 221, 588
BtsCI	GGATG	3 cut(s)	631, 664, 886
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	3 cut(s)	90, 203, 432
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	359, 734, 814
CseI	GACGC	2 cut(s)	713, 839
Csp6I	GTAC	4 cut(s)	295, 760, 786, 941
CviAII	CATG	2 cut(s)	386, 931
CviQI	GTAC	4 cut(s)	295, 760, 786, 941
DdeI	CTNAG	2 cut(s)	107, 291
DpnI	GATC	3 cut(s)	324, 390, 961
DpnII	GATC	3 cut(s)	322, 388, 959
DraIII	CACNNNGTG	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
EaeI	YGGCCR	2 cut(s)	54, 219
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	466, 534
EarI	CTCTTC	2 cut(s)	466, 534
EciI	GGCGGA	1 cut(s)	258
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	511
Eco147I	AGGCCT	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	606
Eco47I	GGWCC	3 cut(s)	359, 734, 814
Eco52I	CGGCCG	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	248, 723
Eco72I	CACGTG	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRII	CCWGG	2 cut(s)	216, 439
EcoT14I	CCWWGG	1 cut(s)	511
EcoT22I	ATGCAT	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	2 cut(s)	389, 934
FaiI	YATR	9 cut(s)	104, 387, 447, 805, 807, 837, 932, 1001, 1003
FalI	AAGNNNNNCTT	6 cut(s)	483, 515, 576, 608, 713, 745
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	2 cut(s)	385, 930
FauNDI	CATATG	1 cut(s)	805
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	5 cut(s)	80, 83, 86, 112, 889
FokI	GGATG	3 cut(s)	638, 671, 893
FriOI	GRGCYC	1 cut(s)	606
Fsp4HI	GCNGC	5 cut(s)	80, 83, 86, 112, 889
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	5 cut(s)	80, 83, 86, 112, 889
GsaI	CCCAGC	1 cut(s)	862
GsuI	CTGGAG	1 cut(s)	802
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	4 cut(s)	56, 136, 221, 588
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	713, 839
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	389, 934
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	6 cut(s)	8, 59, 97, 170, 770, 839
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	2 cut(s)	330, 793
Hpy188I	TCNGA	4 cut(s)	96, 157, 742, 844
Hpy8I	GTNNAC	2 cut(s)	330, 793
Hpy99I	CGWCG	2 cut(s)	178, 729
HpyAV	CCTTC	7 cut(s)	44, 147, 223, 483, 705, 747, 878
HpyCH4III	ACNGT	2 cut(s)	418, 790
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	5 cut(s)	201, 370, 449, 609, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 85, 431, 902
HpyF3I	CTNAG	2 cut(s)	107, 291
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	389, 934
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	322, 388, 959
LmnI	GCTCC	4 cut(s)	97, 350, 910, 939
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	1 cut(s)	872
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	148, 520, 639
MalI	GATC	3 cut(s)	324, 390, 961
MboI	GATC	3 cut(s)	322, 388, 959
MboII	GAAGA	6 cut(s)	172, 175, 332, 453, 551, 925
MhlI	GDGCHC	1 cut(s)	606
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	5 cut(s)	126, 371, 503, 763, 926
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	3 cut(s)	17, 91, 164
MmeI	TCCRAC	3 cut(s)	119, 189, 798
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	706
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	6 cut(s)	129, 501, 570, 582, 720, 984
MslI	CAYNNNNRTG	1 cut(s)	804
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	3 cut(s)	53, 218, 441
MvaI	CCWGG	2 cut(s)	218, 441
MwoI	GCNNNNNNNGC	4 cut(s)	11, 85, 431, 902
NciI	CCSGG	1 cut(s)	53
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	3 cut(s)	322, 388, 959
NlaIII	CATG	2 cut(s)	389, 934
NlaIV	GGNNCC	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	706
NspV	TTCGAA	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	59, 770, 839
PflMI	CCANNNNNTGG	1 cut(s)	780
PkrI	GCNGC	5 cut(s)	81, 84, 87, 113, 890
PleI	GAGTC	3 cut(s)	16, 91, 164
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
PpsI	GAGTC	3 cut(s)	16, 91, 164
Ppu21I	YACGTR	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	814
PshBI	ATTAAT	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	814
Psp6I	CCWGG	2 cut(s)	216, 439
PspCI	CACGTG	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	858
PspGI	CCWGG	2 cut(s)	216, 439
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	3 cut(s)	359, 734, 814
PspPPI	RGGWCCY	1 cut(s)	814
RsaI	GTAC	4 cut(s)	296, 761, 787, 942
RsaNI	GTAC	4 cut(s)	295, 760, 786, 941
RseI	CAYNNNNRTG	1 cut(s)	804
SaqAI	TTAA	6 cut(s)	129, 501, 570, 582, 720, 984
SatI	GCNGC	5 cut(s)	80, 83, 86, 112, 889
Sau3AI	GATC	3 cut(s)	322, 388, 959
Sau96I	GGNCC	3 cut(s)	359, 734, 814
SchI	GAGTC	3 cut(s)	17, 91, 164
ScrFI	CCNGG	3 cut(s)	53, 218, 441
SduI	GDGCHC	1 cut(s)	606
SfaNI	GCATC	1 cut(s)	872
SfuI	TTCGAA	1 cut(s)	318
SinI	GGWCC	3 cut(s)	359, 734, 814
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	5 cut(s)	126, 371, 503, 763, 926
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	6 cut(s)	80, 83, 86, 269, 888, 944
SspI	AATATT	1 cut(s)	620
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	3 cut(s)	51, 216, 439
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	2 cut(s)	418, 790
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	145, 162, 318, 351
TaqII	GACCGA	2 cut(s)	166, 722
TasI	AATT	5 cut(s)	126, 371, 503, 763, 926
TauI	GCSGC	4 cut(s)	82, 85, 88, 891
TfiI	GAWTC	3 cut(s)	59, 770, 839
Tru1I	TTAA	6 cut(s)	129, 501, 570, 582, 720, 984
Tru9I	TTAA	6 cut(s)	129, 501, 570, 582, 720, 984
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	897, 919, 932
TspGWI	ACGGA	2 cut(s)	365, 968
TspRI	CASTG	1 cut(s)	616
Van91I	CCANNNNNTGG	1 cut(s)	780
VpaK11BI	GGWCC	3 cut(s)	359, 734, 814
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.