Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_290

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Forward (+)

144565 .. 146156

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom290g00210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCAGAGTCAATCACACCCATCCTTCCTAACAGTCCTAACCCTAATTACCAGGCCCCCGCAACTGGAACCGTTCCTCCTTCTCCTCCACCGTCATTGCCACTAGCTGGATCACCACCGCCGCCGCCTCCGCCAGCCGCAGCTTCGAGGACTCCCGTCGTATTCAGCTTCCCCAAGAGGCCTTCGGTTCGACTCACTTCCGAGTTCGACAGCGACTCCTCCGTGTTCTTCCACAAGGTCTCTTGCAAGCTGCTCGACAGCCTCGCCAAGCTGAAGCTCTCCTTCAGCAACAACCACAAGGGCGAACTCTCTCCGCCGCAGTTAACATTTGTCTCCAAGAACCTCTCCGTTCACCACAACTTCGAAGATCAATCTACACTCATCAACGGCTCCGTCGATGTTGGCCCGAGATTGCTTCTCCGTGCTAGCCATCATCTCCAGGCACAAGAAGGAGAGGCTACCGTGGTTGCGAAGCTTGCTGACCCTGGCTATGCACTTGAGCTCTCTTCTCCTGTTCCTTATGTTGGTTTGCAGCCGAAAGCTACCCTAAAGTTCCCCCTGGGTGAAGTTTCTGTCGAGGAGAAAGAAGAAGAGGAGAAGCAGAGAATGTTATCAATTAATGGAATAGTAAAAGGCCAAATTTTGAACGGGTTGTGCACTGCTCATTATGCAGATGAAGATTTGAAGTTGCGGTATTTATACAAGGTGGGTCCCTATCAGTTACTTTTTTGGGTGTTTTTCAATTGCACAGGATGGATAGCTGGGTCCCTATCAGTGCCGGAGCCAGAAAACCAGATCAGGAGGGGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

29.4

Weight (kDa)

6.66

Isoelectric Point (pI)

62.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	107
AciI	CCGC	9 cut(s)	60, 119, 122, 125, 131, 138, 314, 317, 691
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	639
AcuI	CTGAAG	2 cut(s)	268, 293
AfiI	CCNNNNNNNGG	3 cut(s)	65, 107, 524
AgsI	TTSAA	3 cut(s)	646, 685, 742
AjnI	CCWGG	4 cut(s)	51, 438, 484, 558
AloI	GAACNNNNNNTCC	2 cut(s)	61, 93
Alw21I	GWGCWC	2 cut(s)	504, 659
Alw26I	GTCTC	2 cut(s)	244, 337
Alw44I	GTGCAC	1 cut(s)	655
AlwI	GGATC	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	5 cut(s)	54, 179, 403, 634, 805
ApaLI	GTGCAC	1 cut(s)	655
ApeKI	GCWGC	3 cut(s)	140, 250, 532
ApoI	RAATTY	1 cut(s)	639
AseI	ATTAAT	1 cut(s)	618
AspS9I	GGNCC	5 cut(s)	55, 404, 710, 765, 805
AsuHPI	GGTGA	3 cut(s)	105, 344, 575
AsuII	TTCGAA	1 cut(s)	363
AsuNHI	GCTAGC	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	710, 765
BaeGI	GKGCMC	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	504
Bbv12I	GWGCWC	2 cut(s)	504, 659
BbvI	GCAGC	3 cut(s)	152, 237, 544
BccI	CCATC	3 cut(s)	29, 438, 747
BceAI	ACGGC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	4 cut(s)	53, 440, 486, 560
BcoDI	GTCTC	2 cut(s)	244, 337
BfaI	CTAG	2 cut(s)	104, 426
BisI	GCNGC	7 cut(s)	122, 125, 138, 141, 251, 317, 533
BlsI	GCNGC	7 cut(s)	123, 126, 139, 142, 252, 318, 534
Bme1390I	CCNGG	4 cut(s)	53, 440, 486, 560
Bme18I	GGWCC	2 cut(s)	710, 765
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	5 cut(s)	55, 404, 710, 765, 805
BmiI	GGNNCC	9 cut(s)	57, 70, 391, 711, 712, 766, 767, 783, 806
BmrFI	CCNGG	4 cut(s)	53, 440, 486, 560
BmtI	GCTAGC	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	518
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	4 cut(s)	462, 484, 558, 559
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 200, 230
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 107, 524
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	4 cut(s)	53, 440, 486, 560
BseDI	CCNNGG	4 cut(s)	462, 484, 558, 559
BseGI	GGATG	2 cut(s)	21, 758
BseLI	CCNNNNNNNGG	3 cut(s)	65, 107, 524
BseMI	GCAATG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	4 cut(s)	75, 208, 593, 608
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	3 cut(s)	152, 237, 544
BseYI	CCCAGC	1 cut(s)	761
BshFI	GGCC	5 cut(s)	56, 181, 405, 636, 807
BsiHKAI	GWGCWC	2 cut(s)	504, 659
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	779
BslFI	GGGAC	2 cut(s)	696, 751
BslI	CCNNNNNNNGG	3 cut(s)	65, 107, 524
BsmAI	GTCTC	2 cut(s)	244, 337
BsmFI	GGGAC	2 cut(s)	696, 751
BsnI	GGCC	5 cut(s)	56, 181, 405, 636, 807
Bso31I	GGTCTC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	406
Bsp119I	TTCGAA	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	504, 659
Bsp143I	GATC	3 cut(s)	110, 367, 795
BspACI	CCGC	9 cut(s)	60, 119, 122, 125, 131, 138, 314, 317, 691
BspANI	GGCC	5 cut(s)	56, 181, 405, 636, 807
BspLI	GGNNCC	9 cut(s)	57, 70, 391, 711, 712, 766, 767, 783, 806
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	118
BspT104I	TTCGAA	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	4 cut(s)	462, 484, 558, 559
BssMI	GATC	3 cut(s)	110, 367, 795
Bst2UI	CCWGG	4 cut(s)	53, 440, 486, 560
Bst4CI	ACNGT	4 cut(s)	35, 73, 93, 463
Bst6I	CTCTTC	2 cut(s)	511, 585
BstBI	TTCGAA	1 cut(s)	363
BstC8I	GCNNGC	4 cut(s)	135, 248, 427, 477
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	21, 758
BstKTI	GATC	3 cut(s)	113, 370, 798
BstMAI	GTCTC	2 cut(s)	244, 337
BstMBI	GATC	3 cut(s)	110, 367, 795
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 476, 668
BstNI	CCWGG	4 cut(s)	53, 440, 486, 560
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	4 cut(s)	51, 438, 484, 558
BstSLI	GKGCMC	1 cut(s)	659
BstV1I	GCAGC	3 cut(s)	152, 237, 544
BsuRI	GGCC	5 cut(s)	56, 181, 405, 636, 807
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	21, 758
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	2 cut(s)	657, 780
Cac8I	GCNNGC	4 cut(s)	135, 248, 427, 477
Cfr13I	GGNCC	5 cut(s)	55, 404, 710, 765, 805
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
DpnI	GATC	3 cut(s)	112, 369, 797
DpnII	GATC	3 cut(s)	110, 367, 795
Eam1104I	CTCTTC	2 cut(s)	511, 585
EarI	CTCTTC	2 cut(s)	511, 585
EciI	GGCGGA	2 cut(s)	120, 303
Ecl136II	GAGCTC	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	710, 765
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	2 cut(s)	268, 293
Eco88I	CYCGRG	1 cut(s)	406
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	4 cut(s)	55, 710, 765, 805
EcoRII	CCWGG	4 cut(s)	51, 438, 484, 558
EcoT38I	GRGCYC	1 cut(s)	504
FaiI	YATR	4 cut(s)	492, 522, 669, 700
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	2 cut(s)	696, 751
FauI	CCCGC	1 cut(s)	67
Fnu4HI	GCNGC	7 cut(s)	122, 125, 138, 141, 251, 317, 533
FokI	GGATG	2 cut(s)	8, 765
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	7 cut(s)	122, 125, 138, 141, 251, 317, 533
FspBI	CTAG	2 cut(s)	104, 426
GluI	GCNGC	7 cut(s)	122, 125, 138, 141, 251, 317, 533
GsaI	CCCAGC	1 cut(s)	765
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	5 cut(s)	56, 181, 405, 636, 807
HapII	CCGG	1 cut(s)	779
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	4 cut(s)	8, 151, 192, 215
HpaI	GTTAAC	1 cut(s)	324
HpaII	CCGG	1 cut(s)	779
HphI	GGTGA	3 cut(s)	105, 344, 575
Hpy166II	GTNNAC	3 cut(s)	324, 352, 657
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	799
Hpy8I	GTNNAC	3 cut(s)	324, 352, 657
Hpy99I	CGWCG	2 cut(s)	161, 398
HpyAV	CCTTC	5 cut(s)	35, 90, 192, 292, 443
HpyCH4III	ACNGT	4 cut(s)	35, 73, 93, 463
HpyCH4V	TGCA	6 cut(s)	246, 494, 532, 657, 671, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 476, 668
KflI	GGGWCCC	2 cut(s)	710, 765
KspAI	GTTAAC	1 cut(s)	324
Kzo9I	GATC	3 cut(s)	110, 367, 795
LmnI	GCTCC	2 cut(s)	395, 781
Lsp1109I	GCAGC	3 cut(s)	152, 237, 544
MaeI	CTAG	2 cut(s)	104, 426
MaeIII	GTNAC	1 cut(s)	720
MalI	GATC	3 cut(s)	112, 369, 797
MboI	GATC	3 cut(s)	110, 367, 795
MboII	GAAGA	6 cut(s)	220, 377, 498, 599, 602, 689
MfeI	CAATTG	1 cut(s)	742
MhlI	GDGCHC	2 cut(s)	504, 659
MluCI	AATT	4 cut(s)	46, 615, 639, 742
MlyI	GAGTC	4 cut(s)	17, 145, 186, 209
MseI	TTAA	3 cut(s)	323, 618, 811
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	4 cut(s)	53, 440, 486, 560
MunI	CAATTG	1 cut(s)	742
MvaI	CCWGG	4 cut(s)	53, 440, 486, 560
MwoI	GCNNNNNNNGC	3 cut(s)	130, 476, 668
NdeII	GATC	3 cut(s)	110, 367, 795
NheI	GCTAGC	1 cut(s)	425
NlaIV	GGNNCC	9 cut(s)	57, 70, 391, 711, 712, 766, 767, 783, 806
NspV	TTCGAA	1 cut(s)	363
PasI	CCCWGGG	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	7 cut(s)	123, 126, 139, 142, 252, 318, 534
PleI	GAGTC	4 cut(s)	16, 145, 186, 209
PpsI	GAGTC	4 cut(s)	16, 145, 186, 209
PpuMI	RGGWCCY	2 cut(s)	710, 765
PshAI	GACNNNNGTC	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	618
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	2 cut(s)	710, 765
Psp6I	CCWGG	4 cut(s)	51, 438, 484, 558
PspFI	CCCAGC	1 cut(s)	761
PspGI	CCWGG	4 cut(s)	51, 438, 484, 558
PspN4I	GGNNCC	9 cut(s)	57, 70, 391, 711, 712, 766, 767, 783, 806
PspPI	GGNCC	5 cut(s)	55, 404, 710, 765, 805
PspPPI	RGGWCCY	2 cut(s)	710, 765
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	323, 618, 811
SatI	GCNGC	7 cut(s)	122, 125, 138, 141, 251, 317, 533
Sau3AI	GATC	3 cut(s)	110, 367, 795
Sau96I	GGNCC	5 cut(s)	55, 404, 710, 765, 805
SchI	GAGTC	4 cut(s)	17, 145, 186, 209
ScrFI	CCNGG	4 cut(s)	53, 440, 486, 560
SduI	GDGCHC	2 cut(s)	504, 659
SfuI	TTCGAA	1 cut(s)	363
SinI	GGWCC	2 cut(s)	710, 765
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	4 cut(s)	46, 615, 639, 742
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	9 cut(s)	60, 119, 122, 125, 131, 138, 314, 317, 691
SspMI	CTAG	2 cut(s)	104, 426
SstI	GAGCTC	1 cut(s)	504
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	4 cut(s)	51, 438, 484, 558
TaaI	ACNGT	4 cut(s)	35, 73, 93, 463
TaqI	TCGA	7 cut(s)	146, 190, 207, 255, 363, 396, 576
TasI	AATT	4 cut(s)	46, 615, 639, 742
TauI	GCSGC	4 cut(s)	124, 127, 140, 319
Tru1I	TTAA	3 cut(s)	323, 618, 811
Tru9I	TTAA	3 cut(s)	323, 618, 811
TscAI	CASTG	2 cut(s)	664, 780
TseI	GCWGC	3 cut(s)	140, 250, 532
TspDTI	ATGAA	1 cut(s)	690
TspGWI	ACGGA	4 cut(s)	211, 337, 382, 410
TspRI	CASTG	2 cut(s)	664, 780
Van91I	CCANNNNNTGG	1 cut(s)	107
VneI	GTGCAC	1 cut(s)	655
VpaK11BI	GGWCC	2 cut(s)	710, 765
VspI	ATTAAT	1 cut(s)	618
XapI	RAATTY	1 cut(s)	639
XspI	CTAG	2 cut(s)	104, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.