Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Reverse (-)

213227 .. 216050

Gene Structure 2824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG001900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCAGAGTCAGCACTCCCACTCCCACTCCCACCCCCACCCACCCTTCCAAACCCTAACTACCCGGCGGATTCTCCACCACCACCGCCAGCTCCGACTCCGAATCCCATACTGAGCTGCTTGTCCTCCAAAATTAAAAGGCCTTCGGTTCGAGTGACTTCGGAGTTCGACAGCGACTCGTCGGTCTTCTTCCACAAGGTGTCTTGCAAGCTGTTGGATAGCCTGGCCAAGCTGAAGGTGTCGTTCAACAACGACCACAAGGGCGAGGTGTCTCCGCCTCACGTGTCATTTATCTCTCAGTACCTCTCCATTCACTACAACTTCGAAGATCAGTCTACCCTCCTCAACAGCTCCCTCGATGTTGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGCGACTATGGTTGCCAAGCTTGCTGACCCTGGATATGCAGTTCAACTCTCTTCTCCTTTCCCTTCTGCTGGTTTGCCAAGAGCTACCCTTAAATTCCCCCTTGGTGAAGTTACTTTGGAGGAAAAAGAAGAGGAGGAGACGAACAAAATGTTGTCTATCAATGGCATTGTTAAAGGCCAACTTTTGGACGGGCTCTGCACTGCTCACTATGTGGATGAGGAGTTGAAGTTACGATACTCATACAAGGATGAGGAGTTGTCTTTTATCCCATCTATTTCTCTGCCTTCAAATGCATTGTCATTTGCTTTTAAGCGTCGCTTCGGTCCTTCAGACAAGTTGAGTTATTGGTACAATTTTGATTCCAACTACTGGAGTACGGTTTACAAGCACACATATGGCAAGGACCTAAAACTGAAAGCTGGTTATGATTCAGAGGTGCGTCTCGGCTGGGCATCTCTTTGGGTTGGGGATGAAGGTGGCAAAGCAAAGACAGCTCCATTGAAGATGAAAGTTCAATTCATGCTCCAAGTACCGCAAGATGACATTAGATCATCAGCCTTGATGTTCCGTGTTAAAAAGAGATGGGACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

37.55

Weight (kDa)

7.68

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccB7I	CCANNNNNTGG	2 cut(s)	601, 786
AccI	GTMKAC	1 cut(s)	335
AciI	CCGC	4 cut(s)	68, 86, 275, 950
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	2 cut(s)	254, 729
AcvI	CACGTG	1 cut(s)	283
AdeI	CACNNNGTG	2 cut(s)	199, 628
AfaI	GTAC	4 cut(s)	302, 767, 793, 948
AfiI	CCNNNNNNNGG	3 cut(s)	485, 601, 786
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	6 cut(s)	247, 461, 643, 705, 919, 932
AjnI	CCWGG	2 cut(s)	222, 445
AloI	GAACNNNNNNTCC	2 cut(s)	441, 473
AluBI	AGCT	9 cut(s)	92, 117, 211, 232, 351, 436, 500, 836, 911
AluI	AGCT	9 cut(s)	92, 117, 211, 232, 351, 436, 500, 836, 911
Alw26I	GTCTC	3 cut(s)	276, 548, 863
AoxI	GGCC	3 cut(s)	140, 225, 592
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
AspS9I	GGNCC	3 cut(s)	365, 740, 820
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	533
AsuII	TTCGAA	1 cut(s)	324
AvaII	GGWCC	3 cut(s)	365, 740, 820
BalI	TGGCCA	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	612
BarI	GAAGNNNNNNTAC	2 cut(s)	635, 667
BbrPI	CACGTG	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	694, 993
BciT130I	CCWGG	2 cut(s)	224, 447
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	3 cut(s)	276, 548, 863
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	3 cut(s)	65, 224, 447
Bme18I	GGWCC	3 cut(s)	365, 740, 820
BmgT120I	GGNCC	3 cut(s)	365, 740, 820
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	3 cut(s)	65, 224, 447
BmsI	GCATC	1 cut(s)	878
BpiI	GAAGAC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	808
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	445, 517
BsaXI	ACNNNNNCTCC	6 cut(s)	6, 12, 36, 42, 629, 659
Bsc4I	CCNNNNNNNGG	3 cut(s)	485, 601, 786
Bse1I	ACTGG	1 cut(s)	791
BseBI	CCWGG	2 cut(s)	224, 447
BseDI	CCNNGG	2 cut(s)	445, 517
BseGI	GGATG	3 cut(s)	637, 670, 892
BseLI	CCNNNNNNNGG	3 cut(s)	485, 601, 786
BseMII	CTCAG	2 cut(s)	104, 311
BseNI	ACTGG	1 cut(s)	791
BseRI	GAGGAG	5 cut(s)	332, 563, 566, 650, 683
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	864
BsgI	GTGCAG	1 cut(s)	598
BshFI	GGCC	3 cut(s)	142, 227, 594
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	3 cut(s)	485, 601, 786
BsmAI	GTCTC	3 cut(s)	276, 548, 863
BsmBI	CGTCTC	2 cut(s)	548, 863
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	142, 227, 594
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	3 cut(s)	328, 394, 965
BspACI	CCGC	4 cut(s)	68, 86, 275, 950
BspANI	GGCC	3 cut(s)	142, 227, 594
BspCNI	CTCAG	2 cut(s)	105, 310
BspLI	GGNNCC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	791
BssECI	CCNNGG	2 cut(s)	445, 517
BssMI	GATC	3 cut(s)	328, 394, 965
BssT1I	CCWWGG	1 cut(s)	517
Bst2UI	CCWGG	2 cut(s)	224, 447
Bst4CI	ACNGT	1 cut(s)	796
Bst6I	CTCTTC	2 cut(s)	472, 540
BstBAI	YACGTR	1 cut(s)	283
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	90, 209, 438
BstDEI	CTNAG	2 cut(s)	113, 297
BstF5I	GGATG	3 cut(s)	637, 670, 892
BstKTI	GATC	3 cut(s)	331, 397, 968
BstMAI	GTCTC	3 cut(s)	276, 548, 863
BstMBI	GATC	3 cut(s)	328, 394, 965
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 437, 908
BstNI	CCWGG	2 cut(s)	224, 447
BstSCI	CCNGG	3 cut(s)	63, 222, 445
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	178
BsuRI	GGCC	3 cut(s)	142, 227, 594
BtsCI	GGATG	3 cut(s)	637, 670, 892
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	3 cut(s)	90, 209, 438
Cfr13I	GGNCC	3 cut(s)	365, 740, 820
CseI	GACGC	2 cut(s)	719, 845
Csp6I	GTAC	4 cut(s)	301, 766, 792, 947
CviAII	CATG	2 cut(s)	392, 937
CviQI	GTAC	4 cut(s)	301, 766, 792, 947
DdeI	CTNAG	2 cut(s)	113, 297
DpnI	GATC	3 cut(s)	330, 396, 967
DpnII	GATC	3 cut(s)	328, 394, 965
DraIII	CACNNNGTG	2 cut(s)	199, 628
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	472, 540
EarI	CTCTTC	2 cut(s)	472, 540
EciI	GGCGGA	2 cut(s)	83, 264
Eco130I	CCWWGG	1 cut(s)	517
Eco147I	AGGCCT	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	612
Eco47I	GGWCC	3 cut(s)	365, 740, 820
Eco57I	CTGAAG	2 cut(s)	254, 729
Eco72I	CACGTG	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	820
EcoRII	CCWGG	2 cut(s)	222, 445
EcoT14I	CCWWGG	1 cut(s)	517
EcoT22I	ATGCAT	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	517
Esp3I	CGTCTC	2 cut(s)	548, 863
FaeI	CATG	2 cut(s)	395, 940
FalI	AAGNNNNNCTT	4 cut(s)	582, 614, 719, 751
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	391, 936
FauNDI	CATATG	1 cut(s)	811
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	3 cut(s)	644, 677, 899
FriOI	GRGCYC	1 cut(s)	612
Fsp4HI	GCNGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	118
GsaI	CCCAGC	1 cut(s)	868
GsuI	CTGGAG	1 cut(s)	808
HaeIII	GGCC	3 cut(s)	142, 227, 594
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	2 cut(s)	719, 845
Hin1II	CATG	2 cut(s)	395, 940
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	7 cut(s)	8, 71, 97, 103, 176, 776, 845
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	2 cut(s)	336, 799
Hpy188I	TCNGA	5 cut(s)	96, 102, 163, 748, 850
Hpy8I	GTNNAC	2 cut(s)	336, 799
Hpy99I	CGWCG	2 cut(s)	184, 735
HpyAV	CCTTC	7 cut(s)	56, 153, 229, 489, 711, 753, 884
HpyCH4III	ACNGT	1 cut(s)	796
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	5 cut(s)	207, 376, 455, 615, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 437, 908
HpyF3I	CTNAG	2 cut(s)	113, 297
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	395, 940
Kzo9I	GATC	3 cut(s)	328, 394, 965
LmnI	GCTCC	4 cut(s)	97, 356, 916, 945
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	878
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	3 cut(s)	154, 526, 645
MalI	GATC	3 cut(s)	330, 396, 967
MboI	GATC	3 cut(s)	328, 394, 965
MboII	GAAGA	6 cut(s)	178, 181, 338, 459, 557, 931
MhlI	GDGCHC	1 cut(s)	612
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	5 cut(s)	132, 377, 509, 769, 932
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	3 cut(s)	17, 91, 170
MmeI	TCCRAC	3 cut(s)	119, 195, 804
Mox20I	TGGCCA	1 cut(s)	227
Mph1103I	ATGCAT	1 cut(s)	712
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	5 cut(s)	135, 507, 588, 726, 990
MslI	CAYNNNNRTG	1 cut(s)	810
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	3 cut(s)	65, 224, 447
MvaI	CCWGG	2 cut(s)	224, 447
MwoI	GCNNNNNNNGC	3 cut(s)	11, 437, 908
NciI	CCSGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	3 cut(s)	328, 394, 965
NlaIII	CATG	2 cut(s)	395, 940
NlaIV	GGNNCC	1 cut(s)	367
NmeAIII	GCCGAG	1 cut(s)	840
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	712
NspV	TTCGAA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	142
PfeI	GAWTC	4 cut(s)	71, 103, 776, 845
PflMI	CCANNNNNTGG	2 cut(s)	601, 786
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	3 cut(s)	16, 91, 170
PmaCI	CACGTG	1 cut(s)	283
PmlI	CACGTG	1 cut(s)	283
PpsI	GAGTC	3 cut(s)	16, 91, 170
Ppu21I	YACGTR	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	820
Psp5II	RGGWCCY	1 cut(s)	820
Psp6I	CCWGG	2 cut(s)	222, 445
PspCI	CACGTG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	864
PspGI	CCWGG	2 cut(s)	222, 445
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	3 cut(s)	365, 740, 820
PspPPI	RGGWCCY	1 cut(s)	820
RsaI	GTAC	4 cut(s)	302, 767, 793, 948
RsaNI	GTAC	4 cut(s)	301, 766, 792, 947
RseI	CAYNNNNRTG	1 cut(s)	810
SaqAI	TTAA	5 cut(s)	135, 507, 588, 726, 990
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	3 cut(s)	328, 394, 965
Sau96I	GGNCC	3 cut(s)	365, 740, 820
SchI	GAGTC	3 cut(s)	17, 91, 170
ScrFI	CCNGG	3 cut(s)	65, 224, 447
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	1 cut(s)	878
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	3 cut(s)	365, 740, 820
SmiMI	CAYNNNNRTG	1 cut(s)	810
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	132, 377, 509, 769, 932
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	4 cut(s)	68, 86, 275, 950
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	3 cut(s)	63, 222, 445
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	1 cut(s)	796
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	4 cut(s)	151, 168, 324, 357
TaqII	GACCGA	2 cut(s)	172, 728
TasI	AATT	5 cut(s)	132, 377, 509, 769, 932
TfiI	GAWTC	4 cut(s)	71, 103, 776, 845
Tru1I	TTAA	5 cut(s)	135, 507, 588, 726, 990
Tru9I	TTAA	5 cut(s)	135, 507, 588, 726, 990
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	903, 925, 938
TspGWI	ACGGA	2 cut(s)	371, 974
TspRI	CASTG	1 cut(s)	622
Van91I	CCANNNNNTGG	2 cut(s)	601, 786
VpaK11BI	GGWCC	3 cut(s)	365, 740, 820
XapI	RAATTY	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.