Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Forward (+)

7823054 .. 7826007

Gene Structure 2954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG047200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGCTCCGCGCTTCGTTGGCCAAAGGATTGAAGGTAATTCTTAGCCAAGCACACCCAGAAGGGTCAAATTGCTGCAACTGGAGTTCTCTCGGAGCTTCAAATCGTCGGCTGCTGCTTCTACAGCACTTCTGCTGGTCAGCTCCGACTCAGATTCCGAATCCCATACTGAGCTGCTTCTCCTCCAAAATTAAAAGGCCTTCGGTTCGAGCGACTTCGGAGTTCGACAGCGACTCGTCGGTCTTCTTCCACAAGGTGTCTTGCAAGCTGTTCAATAGCGTGGCCAAGCTGAAGTCTACCCTCCCCAACAGCTCCATCGATGTTGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGACGAATATGGTTGCGAAGCTTGCTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCCTTCTGCTGGTTTGCCAAAAGCTACCCTTAAATTCCCCCTTGGTGAAGTTACTTGGGAGGAAAAAGAAGAGGAGGAAAAATCCATTGACGTTGGACATCCACAGATAGAACTGGTCACTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.55

Weight (kDa)

8.61

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	296
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	10
AcoI	YGGCCR	2 cut(s)	21, 282
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	311
AdeI	CACNNNGTG	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	4 cut(s)	34, 102, 274, 422
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	9 cut(s)	7, 98, 143, 174, 268, 289, 312, 397, 461
AluI	AGCT	9 cut(s)	7, 98, 143, 174, 268, 289, 312, 397, 461
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	371
AoxI	GGCC	3 cut(s)	21, 197, 282
ApeKI	GCWGC	4 cut(s)	75, 112, 115, 174
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	326
BalI	TGGCCA	2 cut(s)	23, 284
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	62, 99, 102, 161
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	122
BisI	GCNGC	4 cut(s)	76, 113, 116, 175
BlsI	GCNGC	4 cut(s)	77, 114, 117, 176
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	406, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	2 cut(s)	86, 555
BseBI	CCWGG	1 cut(s)	408
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	406, 478
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	161, 164
BseNI	ACTGG	2 cut(s)	86, 555
BseRI	GAGGAG	2 cut(s)	172, 524
BseXI	GCAGC	4 cut(s)	62, 99, 102, 161
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	23, 199, 284
BshVI	ATCGAT	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	371
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	3 cut(s)	23, 199, 284
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	3 cut(s)	23, 199, 284
BspCNI	CTCAG	2 cut(s)	162, 163
BspDI	ATCGAT	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	86, 555
BssECI	CCNNGG	2 cut(s)	406, 478
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	1 cut(s)	408
Bst6I	CTCTTC	2 cut(s)	433, 501
BstC8I	GCNNGC	2 cut(s)	266, 399
BstDEI	CTNAG	3 cut(s)	44, 150, 170
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 124, 398
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	122
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	4 cut(s)	62, 99, 102, 161
BstV2I	GAAGAC	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	23, 199, 284
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	266, 399
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	326
ClaI	ATCGAT	1 cut(s)	318
CviAII	CATG	1 cut(s)	353
DdeI	CTNAG	3 cut(s)	44, 150, 170
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
DraIII	CACNNNGTG	1 cut(s)	256
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	2 cut(s)	21, 282
Eam1104I	CTCTTC	2 cut(s)	433, 501
EarI	CTCTTC	2 cut(s)	433, 501
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	478
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	478
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	478
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	1 cut(s)	356
FaiI	YATR	6 cut(s)	167, 354, 386, 414, 560, 562
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	4 cut(s)	76, 113, 116, 175
FokI	GGATG	1 cut(s)	522
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	4 cut(s)	76, 113, 116, 175
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	4 cut(s)	76, 113, 116, 175
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	23, 199, 284
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	4 cut(s)	148, 154, 160, 233
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	5 cut(s)	95, 147, 153, 159, 220
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	2 cut(s)	111, 241
HpyAV	CCTTC	4 cut(s)	28, 56, 210, 450
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	4 cut(s)	78, 264, 337, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 124, 398
HpyF3I	CTNAG	3 cut(s)	44, 150, 170
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	5 cut(s)	4, 12, 95, 148, 317
LpnPI	CCDG	8 cut(s)	67, 72, 121, 343, 393, 420, 432, 536
Lsp1109I	GCAGC	4 cut(s)	62, 99, 102, 161
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	487, 553
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	5 cut(s)	235, 238, 420, 423, 518
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	2 cut(s)	23, 284
MluCI	AATT	5 cut(s)	39, 70, 189, 338, 470
MluNI	TGGCCA	2 cut(s)	23, 284
MlyI	GAGTC	2 cut(s)	142, 227
MmeI	TCCRAC	2 cut(s)	170, 511
MnlI	CCTC	5 cut(s)	193, 311, 490, 502, 505
Mox20I	TGGCCA	2 cut(s)	23, 284
Mph1103I	ATGCAT	1 cut(s)	418
MscI	TGGCCA	2 cut(s)	23, 284
MseI	TTAA	2 cut(s)	192, 468
Msp20I	TGGCCA	2 cut(s)	23, 284
MspR9I	CCNGG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	20, 124, 398
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	553
NsiI	ATGCAT	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	154, 160
PkrI	GCNGC	4 cut(s)	77, 114, 117, 176
PleI	GAGTC	2 cut(s)	142, 227
PpsI	GAGTC	2 cut(s)	142, 227
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	192, 468
SatI	GCNGC	4 cut(s)	76, 113, 116, 175
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	2 cut(s)	142, 227
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	5 cut(s)	39, 70, 189, 338, 470
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	1 cut(s)	10
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	1 cut(s)	478
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	3 cut(s)	208, 225, 318
TaqII	GACCGA	1 cut(s)	229
TasI	AATT	5 cut(s)	39, 70, 189, 338, 470
TfiI	GAWTC	2 cut(s)	154, 160
Tru1I	TTAA	2 cut(s)	192, 468
Tru9I	TTAA	2 cut(s)	192, 468
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	4 cut(s)	75, 112, 115, 174
Tsp45I	GTSAC	1 cut(s)	553
TspGWI	ACGGA	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.