Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Forward (+)

23094386 .. 23099387

Gene Structure 5002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG120800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTGCCTCTAGTTGCTACATCTGAATTTGACGAGTACCTCTCCATTCACTACAACTTCGAAGATCAGTCTACCCTCCCCAACAGCTCCGTCGATGTTGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGACGAATATGGTTGCGAAGCTTGTTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCCTTCTGCTGGTTTGCCAAAAGCTACCCTTAAATTCCCCCTTGGCCAACTTTTGAACGGGCTCTGCACTGCTCACTATGTGGATGAGGAGTTGAAGTTACGGTACTCATTCGAGGATGAGAAGTTGTCTTTTATCCCATCTATTTCACTGCCTTCAAATGCATTGTCATTTGCTTTTAAGCGTCGCTTCGGTCCTTCAGACAAGTTGAGGGTCGAGTCACAAGAGAGGGAAAATATTGATCCTATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.25

Weight (kDa)

5.17

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	2 cut(s)	26, 245
AcuI	CTGAAG	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	292
AfaI	GTAC	2 cut(s)	38, 317
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	4 cut(s)	197, 268, 307, 369
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	87, 172, 236
AluI	AGCT	3 cut(s)	87, 172, 236
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	446
AoxI	GGCC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	26, 245
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AspS9I	GGNCC	2 cut(s)	101, 404
AsuII	TTCGAA	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	101, 404
BalI	TGGCCA	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	276
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BccI	CCATC	1 cut(s)	358
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	2 cut(s)	101, 404
BmgT120I	GGNCC	2 cut(s)	101, 404
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	181, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	181, 253
BseGI	GGATG	2 cut(s)	301, 334
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	258
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	64, 130, 451
BspANI	GGCC	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	181, 253
BssMI	GATC	3 cut(s)	64, 130, 451
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	208
BstBI	TTCGAA	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	301, 334
BstKTI	GATC	3 cut(s)	67, 133, 454
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	3 cut(s)	64, 130, 451
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	301, 334
BtsI	GCAGTG	2 cut(s)	279, 359
BtsIMutI	CAGTG	2 cut(s)	279, 359
Cfr13I	GGNCC	2 cut(s)	101, 404
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	37, 316
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	5 cut(s)	87, 172, 236, 258, 274
CviKI_1	RGCY	5 cut(s)	87, 172, 236, 258, 274
CviQI	GTAC	2 cut(s)	37, 316
DpnI	GATC	3 cut(s)	66, 132, 453
DpnII	GATC	3 cut(s)	64, 130, 451
DraIII	CACNNNGTG	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	101, 404
Eco57I	CTGAAG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	253
EcoT22I	ATGCAT	2 cut(s)	193, 376
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	1 cut(s)	131
FaiI	YATR	4 cut(s)	129, 161, 189, 291
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 383, 415
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	71
FokI	GGATG	2 cut(s)	308, 341
FriOI	GRGCYC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	258
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	72, 178
Hpy188I	TCNGA	2 cut(s)	25, 412
Hpy8I	GTNNAC	2 cut(s)	72, 178
Hpy99I	CGWCG	2 cut(s)	95, 399
HpyAV	CCTTC	3 cut(s)	225, 375, 417
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	112, 191, 279, 374
Hsp92II	CATG	1 cut(s)	131
Kzo9I	GATC	3 cut(s)	64, 130, 451
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	4 cut(s)	118, 168, 195, 207
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	309, 429
MalI	GATC	3 cut(s)	66, 132, 453
MboI	GATC	3 cut(s)	64, 130, 451
MboII	GAAGA	3 cut(s)	74, 195, 198
MhlI	GDGCHC	1 cut(s)	276
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	3 cut(s)	26, 113, 245
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	7 cut(s)	18, 50, 86, 292, 319, 414, 432
Mox20I	TGGCCA	1 cut(s)	258
Mph1103I	ATGCAT	2 cut(s)	193, 376
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	3 cut(s)	243, 390, 463
Msp20I	TGGCCA	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	64, 130, 451
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	429
NsiI	ATGCAT	2 cut(s)	193, 376
NspV	TTCGAA	1 cut(s)	60
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	2 cut(s)	101, 404
RsaI	GTAC	2 cut(s)	38, 317
RsaNI	GTAC	2 cut(s)	37, 316
SaqAI	TTAA	3 cut(s)	243, 390, 463
Sau3AI	GATC	3 cut(s)	64, 130, 451
Sau96I	GGNCC	2 cut(s)	101, 404
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	4 cut(s)	42, 89, 174, 238
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	2 cut(s)	101, 404
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	26, 113, 245
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	315
TaqI	TCGA	4 cut(s)	60, 93, 324, 426
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	26, 113, 245
Tru1I	TTAA	3 cut(s)	243, 390, 463
Tru9I	TTAA	3 cut(s)	243, 390, 463
TscAI	CASTG	2 cut(s)	286, 366
TseFI	GTSAC	1 cut(s)	429
Tsp45I	GTSAC	1 cut(s)	429
TspGWI	ACGGA	2 cut(s)	79, 107
TspRI	CASTG	2 cut(s)	286, 366
VpaK11BI	GGWCC	2 cut(s)	101, 404
XapI	RAATTY	2 cut(s)	26, 245
XmiI	GTMKAC	1 cut(s)	71
XspI	CTAG	1 cut(s)	11
Zsp2I	ATGCAT	2 cut(s)	193, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.