Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Forward (+)

17789371 .. 17793037

Gene Structure 3667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1087400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCAGAGTCAATCACACCCATCCTTCCTAACAATCCTAACCCTAATTACCAGGGCCCCGCAACTGGAACTGTTCCTCCTTCTCCTCCACCTTCATTGCCACTAGCTGGATCACCACCGCCGCCGCCCCCGCCAGCCGCAGCTTCGAGGACTCCCGTCGTATTCAGCTTCCCCAAGAGGCCTTCGGTTCGACTCACTTCCGAGTTCGACAGCGACTCCTCCGTCTTCTTCCACAAGGTCTCTTGCAAGCTGCTCGACAGCCTCGCCAAGCTGAAGCTCTCCTTCAGCAACAACCACAAGGGCGAACTCTCTCCGCCGCAGTTGACATTTGTCTCCAAGAACCTCTCCGTTCACCACAACTTCGAAGATCAATCTACCCTCCTCAACGGTTCCGTCGATGTTGGCCAGAGATTGCATCTCCGTGCTACCCATGATCTCCAGGCACAAGAAGGAGAGGCTACCGTGGTCGCGAAGCTTGCTGACCCTGGCTATGCACTTGAGCTCTCTTCTCCTGTTCCTTATGTTGGTTTGCCGAAAGCTACCCTAAAGTTCCCCCTTGGTGAAGTTTCTGTCGAGGAGAAAGAAGAAGAGGAGAAGCAGAGAATGTTATCAATTAATGGAATAGTAAAAGGCCATATTTTGAACGGGTTGTGCACTGCTCATTATGCAGATGAAGATTTGAAGTTGCGGTATTTATACAAGGACGAGGAGATGTCTTTGATTCCAACCCTTCGTCTGCCTTCGAATGCATTGTCATTTGCTTTCAAGCGTCGGTTTGGTCCTTCTGACAAGTTGAGCTACTGGTACAATTTTGATTCCAACTACTGGAGCGCGGTATACAAGCACACATACGGCAAGGATTTGAAACTTAAAGCTGGTTACGATTCAGAGGTGCACCTTGGCTGGGCATCTCTTTGGGTTGGAGATGAAGGTGGGAAAGCAAAGACAGCCCCGATGAAGATGAAAGTTCAATTCATGCTTCAAGTGCCGCAAGATGACATTCGATCATCGGCTTTGATGTTCCGGGTTAAAAAGAGATGGGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

38.73

Weight (kDa)

8.6

Isoelectric Point (pI)

59.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccB7I	CCANNNNNTGG	2 cut(s)	107, 825
AccI	GTMKAC	1 cut(s)	837
AccII	CGCG	2 cut(s)	470, 833
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	403
AcuI	CTGAAG	2 cut(s)	268, 293
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	5 cut(s)	65, 107, 524, 825, 904
AgsI	TTSAA	6 cut(s)	643, 682, 766, 865, 971, 983
AjnI	CCWGG	3 cut(s)	51, 438, 484
AloI	GAACNNNNNNTCC	2 cut(s)	61, 93
Alw21I	GWGCWC	3 cut(s)	504, 656, 897
Alw26I	GTCTC	2 cut(s)	244, 337
Alw44I	GTGCAC	2 cut(s)	652, 893
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	4 cut(s)	55, 179, 403, 631
ApaI	GGGCCC	1 cut(s)	59
ApaLI	GTGCAC	2 cut(s)	652, 893
ApeKI	GCWGC	2 cut(s)	140, 250
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AseI	ATTAAT	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	833
AspS9I	GGNCC	3 cut(s)	55, 56, 779
AsuC2I	CCSGG	1 cut(s)	1025
AsuHPI	GGTGA	3 cut(s)	105, 344, 572
AsuII	TTCGAA	2 cut(s)	363, 743
AvaII	GGWCC	1 cut(s)	779
BaeGI	GKGCMC	3 cut(s)	59, 656, 897
BalI	TGGCCA	1 cut(s)	405
BanII	GRGCYC	2 cut(s)	59, 504
BbsI	GAAGAC	1 cut(s)	217
Bbv12I	GWGCWC	3 cut(s)	504, 656, 897
BbvI	GCAGC	2 cut(s)	152, 237
BccI	CCATC	2 cut(s)	29, 1032
BceAI	ACGGC	1 cut(s)	868
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	3 cut(s)	53, 440, 486
BcnI	CCSGG	1 cut(s)	1025
BcoDI	GTCTC	2 cut(s)	244, 337
BfaI	CTAG	1 cut(s)	104
BisI	GCNGC	7 cut(s)	122, 125, 138, 141, 251, 317, 989
BlsI	GCNGC	7 cut(s)	123, 126, 139, 142, 252, 318, 990
Bme1390I	CCNGG	4 cut(s)	53, 440, 486, 1025
Bme18I	GGWCC	1 cut(s)	779
BmgT120I	GGNCC	3 cut(s)	55, 56, 779
BmiI	GGNNCC	3 cut(s)	57, 58, 391
BmrFI	CCNGG	4 cut(s)	53, 440, 486, 1025
BmsI	GCATC	2 cut(s)	424, 917
BoxI	GACNNNNGTC	2 cut(s)	155, 329
BpiI	GAAGAC	1 cut(s)	217
BpmI	CTGGAG	2 cut(s)	422, 847
Bpu14I	TTCGAA	2 cut(s)	363, 743
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	1025
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	5 cut(s)	52, 462, 484, 556, 898
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 200, 230
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 107, 524, 825, 904
Bse1I	ACTGG	3 cut(s)	70, 806, 830
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	3 cut(s)	53, 440, 486
BseDI	CCNNGG	5 cut(s)	52, 462, 484, 556, 898
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	5 cut(s)	65, 107, 524, 825, 904
BseMI	GCAATG	1 cut(s)	95
BseNI	ACTGG	3 cut(s)	70, 806, 830
BseRI	GAGGAG	6 cut(s)	75, 208, 371, 590, 605, 722
BseSI	GKGCMC	3 cut(s)	59, 656, 897
BseXI	GCAGC	2 cut(s)	152, 237
BseYI	CCCAGC	1 cut(s)	903
Bsh1236I	CGCG	2 cut(s)	470, 833
BshFI	GGCC	4 cut(s)	57, 181, 405, 633
BsiHKAI	GWGCWC	3 cut(s)	504, 656, 897
BsiSI	CCGG	1 cut(s)	1024
BslI	CCNNNNNNNGG	5 cut(s)	65, 107, 524, 825, 904
BsmAI	GTCTC	2 cut(s)	244, 337
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	4 cut(s)	57, 181, 405, 633
Bso31I	GGTCTC	1 cut(s)	244
Bsp119I	TTCGAA	2 cut(s)	363, 743
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	4 cut(s)	59, 504, 656, 897
Bsp143I	GATC	4 cut(s)	110, 367, 433, 1004
Bsp68I	TCGCGA	1 cut(s)	470
BspANI	GGCC	4 cut(s)	57, 181, 405, 633
BspFNI	CGCG	2 cut(s)	470, 833
BspLI	GGNNCC	3 cut(s)	57, 58, 391
BspPI	GGATC	1 cut(s)	118
BspT104I	TTCGAA	2 cut(s)	363, 743
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	3 cut(s)	70, 806, 830
BssECI	CCNNGG	5 cut(s)	52, 462, 484, 556, 898
BssMI	GATC	4 cut(s)	110, 367, 433, 1004
BssNAI	GTATAC	1 cut(s)	838
BssT1I	CCWWGG	2 cut(s)	556, 898
Bst1107I	GTATAC	1 cut(s)	838
Bst2UI	CCWGG	3 cut(s)	53, 440, 486
Bst4CI	ACNGT	3 cut(s)	73, 389, 463
Bst6I	CTCTTC	2 cut(s)	511, 582
BstBI	TTCGAA	2 cut(s)	363, 743
BstC8I	GCNNGC	3 cut(s)	135, 248, 477
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	21
BstFNI	CGCG	2 cut(s)	470, 833
BstHHI	GCGC	1 cut(s)	833
BstKTI	GATC	4 cut(s)	113, 370, 436, 1007
BstMAI	GTCTC	2 cut(s)	244, 337
BstMBI	GATC	4 cut(s)	110, 367, 433, 1004
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 476, 665, 947, 985
BstNI	CCWGG	3 cut(s)	53, 440, 486
BstPAI	GACNNNNGTC	2 cut(s)	155, 329
BstSCI	CCNGG	4 cut(s)	51, 438, 484, 1023
BstSLI	GKGCMC	3 cut(s)	59, 656, 897
BstUI	CGCG	2 cut(s)	470, 833
BstV1I	GCAGC	2 cut(s)	152, 237
BstV2I	GAAGAC	1 cut(s)	217
BstZ17I	GTATAC	1 cut(s)	838
BsuRI	GGCC	4 cut(s)	57, 181, 405, 633
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	654
BtuMI	TCGCGA	1 cut(s)	470
Cac8I	GCNNGC	3 cut(s)	135, 248, 477
CfoI	GCGC	1 cut(s)	833
Cfr13I	GGNCC	3 cut(s)	55, 56, 779
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	1 cut(s)	805
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviAII	CATG	2 cut(s)	431, 976
CviQI	GTAC	1 cut(s)	805
DpnI	GATC	4 cut(s)	112, 369, 435, 1006
DpnII	GATC	4 cut(s)	110, 367, 433, 1004
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	2 cut(s)	511, 582
EarI	CTCTTC	2 cut(s)	511, 582
EciI	GGCGGA	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	2 cut(s)	556, 898
Eco147I	AGGCCT	1 cut(s)	181
Eco24I	GRGCYC	2 cut(s)	59, 504
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	779
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	2 cut(s)	268, 293
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	2 cut(s)	55, 56
EcoRII	CCWGG	3 cut(s)	51, 438, 484
EcoT14I	CCWWGG	2 cut(s)	556, 898
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	2 cut(s)	59, 504
ErhI	CCWWGG	2 cut(s)	556, 898
FaeI	CATG	2 cut(s)	434, 979
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	2 cut(s)	430, 975
FauI	CCCGC	2 cut(s)	67, 138
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	7 cut(s)	122, 125, 138, 141, 251, 317, 989
FokI	GGATG	1 cut(s)	8
FriOI	GRGCYC	2 cut(s)	59, 504
Fsp4HI	GCNGC	7 cut(s)	122, 125, 138, 141, 251, 317, 989
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	832
GluI	GCNGC	7 cut(s)	122, 125, 138, 141, 251, 317, 989
GsaI	CCCAGC	1 cut(s)	907
GsuI	CTGGAG	2 cut(s)	422, 847
HaeIII	GGCC	4 cut(s)	57, 181, 405, 633
HapII	CCGG	1 cut(s)	1024
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	1 cut(s)	833
Hin1II	CATG	2 cut(s)	434, 979
Hin6I	GCGC	1 cut(s)	831
HinP1I	GCGC	1 cut(s)	831
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	7 cut(s)	8, 151, 192, 215, 721, 815, 884
HpaII	CCGG	1 cut(s)	1024
HphI	GGTGA	3 cut(s)	105, 344, 572
Hpy166II	GTNNAC	5 cut(s)	324, 352, 654, 838, 895
Hpy188I	TCNGA	3 cut(s)	202, 787, 889
Hpy188III	TCNNGA	1 cut(s)	469
Hpy8I	GTNNAC	5 cut(s)	324, 352, 654, 838, 895
Hpy99I	CGWCG	3 cut(s)	161, 398, 774
HpyCH4III	ACNGT	3 cut(s)	73, 389, 463
HpyCH4V	TGCA	7 cut(s)	246, 415, 494, 654, 668, 749, 895
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 476, 665, 947, 985
Hsp92II	CATG	2 cut(s)	434, 979
HspAI	GCGC	1 cut(s)	831
Kzo9I	GATC	4 cut(s)	110, 367, 433, 1004
LmnI	GCTCC	1 cut(s)	828
Lsp1109I	GCAGC	2 cut(s)	152, 237
LweI	GCATC	2 cut(s)	424, 917
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	4 cut(s)	112, 369, 435, 1006
MboI	GATC	4 cut(s)	110, 367, 433, 1004
MboII	GAAGA	8 cut(s)	217, 220, 377, 498, 596, 599, 686, 970
MhlI	GDGCHC	4 cut(s)	59, 504, 656, 897
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	4 cut(s)	46, 612, 808, 971
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	4 cut(s)	17, 145, 186, 209
MmeI	TCCRAC	3 cut(s)	749, 843, 901
Mox20I	TGGCCA	1 cut(s)	405
Mph1103I	ATGCAT	1 cut(s)	751
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	3 cut(s)	615, 870, 1029
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	405
MspI	CCGG	1 cut(s)	1024
MspR9I	CCNGG	4 cut(s)	53, 440, 486, 1025
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	3 cut(s)	53, 440, 486
MvnI	CGCG	2 cut(s)	470, 833
MwoI	GCNNNNNNNGC	5 cut(s)	130, 476, 665, 947, 985
NciI	CCSGG	1 cut(s)	1025
NdeII	GATC	4 cut(s)	110, 367, 433, 1004
NlaIII	CATG	2 cut(s)	434, 979
NlaIV	GGNNCC	3 cut(s)	57, 58, 391
NruI	TCGCGA	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	751
NspV	TTCGAA	2 cut(s)	363, 743
PceI	AGGCCT	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	1 cut(s)	751
PfeI	GAWTC	3 cut(s)	721, 815, 884
PflMI	CCANNNNNTGG	2 cut(s)	107, 825
PkrI	GCNGC	7 cut(s)	123, 126, 139, 142, 252, 318, 990
PleI	GAGTC	4 cut(s)	16, 145, 186, 209
PpsI	GAGTC	4 cut(s)	16, 145, 186, 209
PshAI	GACNNNNGTC	2 cut(s)	155, 329
PshBI	ATTAAT	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	3 cut(s)	51, 438, 484
PspFI	CCCAGC	1 cut(s)	903
PspGI	CCWGG	3 cut(s)	51, 438, 484
PspN4I	GGNNCC	3 cut(s)	57, 58, 391
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	3 cut(s)	55, 56, 779
RruI	TCGCGA	1 cut(s)	470
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
RseI	CAYNNNNRTG	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	615, 870, 1029
SatI	GCNGC	7 cut(s)	122, 125, 138, 141, 251, 317, 989
Sau3AI	GATC	4 cut(s)	110, 367, 433, 1004
Sau96I	GGNCC	3 cut(s)	55, 56, 779
SchI	GAGTC	4 cut(s)	17, 145, 186, 209
ScrFI	CCNGG	4 cut(s)	53, 440, 486, 1025
SduI	GDGCHC	4 cut(s)	59, 504, 656, 897
SfaNI	GCATC	2 cut(s)	424, 917
SfuI	TTCGAA	2 cut(s)	363, 743
SinI	GGWCC	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	4 cut(s)	46, 612, 808, 971
SseBI	AGGCCT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	504
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	4 cut(s)	51, 438, 484, 1023
StyI	CCWWGG	2 cut(s)	556, 898
TaaI	ACNGT	3 cut(s)	73, 389, 463
TaqI	TCGA	9 cut(s)	146, 190, 207, 255, 363, 396, 573, 743, 1003
TasI	AATT	4 cut(s)	46, 612, 808, 971
TauI	GCSGC	5 cut(s)	124, 127, 140, 319, 991
TfiI	GAWTC	3 cut(s)	721, 815, 884
Tru1I	TTAA	3 cut(s)	615, 870, 1029
Tru9I	TTAA	3 cut(s)	615, 870, 1029
TscAI	CASTG	1 cut(s)	661
TseI	GCWGC	2 cut(s)	140, 250
TspDTI	ATGAA	6 cut(s)	84, 687, 942, 964, 971, 977
TspGWI	ACGGA	4 cut(s)	211, 337, 382, 410
TspRI	CASTG	1 cut(s)	661
Van91I	CCANNNNNTGG	2 cut(s)	107, 825
VneI	GTGCAC	2 cut(s)	652, 893
VpaK11BI	GGWCC	1 cut(s)	779
VspI	ATTAAT	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.