Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Reverse (-)

231405 .. 234602

Gene Structure 3198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015620

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCAGAGTCAGCACCAGCACCACCCACCCTTCCAAACCCTAACTACCCGGCGGATTCTCCACCACCGCCGCCGCCGCCGCCAGCTCCGGCTCCGATATTGAGCTGCTTGTCCTCCAAAATTAAAAGGCCTTCGGTTCGAGTGACTTCGGAGTTCGACAGCGACTCGTCGGTCTTCTTCCACAAGGTGTCTTGCAAGCTGTTGGATAGCCTGGCCAAGCTGAAGGTGTCGTTCAACAACGACCACAAGGGCGAGGTGTCTCCGCCTCACGTGTCATTTATCTCTCAGTACCTCTCCATTCACTACAACTTCGAAGATCAGTCTACCCTCCTCAACAGCTCCCTCGATGTTGGTCCCAGGTTGCAATTCCGTGCTTCCCATGATCTGAAGGCACAACAAGGAGAGGCGACTATGGTTGCCAAGCTTGCTGACCCTGGATATGCATTTGAACTCTCTTCTCCTTTCCCTTCTGCTGGTTTGCCAAGAGCTACCCTTAAATTCCCCCTTGGTGAAGTTACTTTGGAGGAAAAAGAAGAGGAGGAGACGAACAAAATGTTGTCTATTAATGGCATTGTTAAAGGCCAACTTTTGAACGGGCTCTGCACTGCTCAATATTTGGATGAGGAGTTGAAGTTACGATACTCATTCAAGGATGAGGAGTTGTCTTTTATCCCATCTATTTCTCTGCCTTCAAATGCATTGTCATTTGCTTTTAAGCGTCGTTTCGGTCCTTCAGACAAGTTGAGTTATTGGTACAATTTTGATTCCAACTACTGGAGTACGGTTTACAAGCACACATATGGCAAGGACCTAAAACTGAAAGCTGGTTATGATTCAGAGGTGCGTCTCGGCTGGGCATCTCTTTGGGTTGGGGATGAAGGTGGCAAAGCAAAGACAGCTCCATTGAAGATGAAAGTTCAATTCATGCTCCAAGTACCGCAAGATGACATTAGATCATCAGCCTTGATGTTCCGTGTTAAAAAGAGATGGGACATATATCAGCAGGTGACAGGCAGACCGAAATGGGAAGAAGCAGTTAAATCACGAAAGCTTGTTATATATAACAAAGTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

40.18

Weight (kDa)

8.82

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	994
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	994
AccB7I	CCANNNNNTGG	1 cut(s)	774
AccI	GTMKAC	1 cut(s)	323
AciI	CCGC	8 cut(s)	53, 68, 71, 74, 77, 80, 263, 938
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	3 cut(s)	242, 407, 717
AcvI	CACGTG	1 cut(s)	271
AdeI	CACNNNGTG	1 cut(s)	187
AfaI	GTAC	4 cut(s)	290, 755, 781, 936
AfiI	CCNNNNNNNGG	2 cut(s)	473, 774
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	8 cut(s)	235, 449, 592, 631, 649, 693, 907, 920
AjnI	CCWGG	3 cut(s)	210, 356, 433
Alw26I	GTCTC	3 cut(s)	264, 536, 851
AoxI	GGCC	3 cut(s)	128, 213, 580
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	1 cut(s)	497
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AseI	ATTAAT	1 cut(s)	564
AspS9I	GGNCC	3 cut(s)	353, 728, 808
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	521, 1018
AsuII	TTCGAA	1 cut(s)	312
AvaII	GGWCC	3 cut(s)	353, 728, 808
BalI	TGGCCA	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	600
BarI	GAAGNNNNNNTAC	2 cut(s)	623, 655
BbrPI	CACGTG	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	2 cut(s)	682, 981
BciT130I	CCWGG	3 cut(s)	212, 358, 435
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	3 cut(s)	264, 536, 851
BfuAI	ACCTGC	1 cut(s)	994
BisI	GCNGC	5 cut(s)	71, 74, 77, 80, 106
BlsI	GCNGC	5 cut(s)	72, 75, 78, 81, 107
Bme1390I	CCNGG	4 cut(s)	50, 212, 358, 435
Bme18I	GGWCC	3 cut(s)	353, 728, 808
BmgT120I	GGNCC	3 cut(s)	353, 728, 808
BmiI	GGNNCC	2 cut(s)	93, 355
BmrFI	CCNGG	4 cut(s)	50, 212, 358, 435
BmsI	GCATC	1 cut(s)	866
BpiI	GAAGAC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	796
Bpu14I	TTCGAA	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	3 cut(s)	356, 433, 505
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 774
Bse1I	ACTGG	1 cut(s)	779
BseBI	CCWGG	3 cut(s)	212, 358, 435
BseDI	CCNNGG	3 cut(s)	356, 433, 505
BseGI	GGATG	3 cut(s)	625, 658, 880
BseLI	CCNNNNNNNGG	2 cut(s)	473, 774
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	779
BseRI	GAGGAG	5 cut(s)	320, 551, 554, 638, 671
BseXI	GCAGC	1 cut(s)	92
BseYI	CCCAGC	1 cut(s)	852
BsgI	GTGCAG	1 cut(s)	586
BshFI	GGCC	3 cut(s)	130, 215, 582
BsiSI	CCGG	2 cut(s)	50, 89
BslFI	GGGAC	2 cut(s)	339, 1004
BslI	CCNNNNNNNGG	2 cut(s)	473, 774
BsmAI	GTCTC	3 cut(s)	264, 536, 851
BsmBI	CGTCTC	2 cut(s)	536, 851
BsmFI	GGGAC	2 cut(s)	339, 1004
BsnI	GGCC	3 cut(s)	130, 215, 582
Bsp119I	TTCGAA	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	3 cut(s)	316, 382, 953
BspACI	CCGC	8 cut(s)	53, 68, 71, 74, 77, 80, 263, 938
BspANI	GGCC	3 cut(s)	130, 215, 582
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	93, 355
BspMI	ACCTGC	1 cut(s)	994
BspT104I	TTCGAA	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	779
BssECI	CCNNGG	3 cut(s)	356, 433, 505
BssMI	GATC	3 cut(s)	316, 382, 953
BssT1I	CCWWGG	1 cut(s)	505
Bst2UI	CCWGG	3 cut(s)	212, 358, 435
Bst4CI	ACNGT	1 cut(s)	784
Bst6I	CTCTTC	2 cut(s)	460, 528
BstBAI	YACGTR	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	3 cut(s)	84, 197, 426
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	625, 658, 880
BstKTI	GATC	3 cut(s)	319, 385, 956
BstMAI	GTCTC	3 cut(s)	264, 536, 851
BstMBI	GATC	3 cut(s)	316, 382, 953
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 76, 79, 425, 896
BstNI	CCWGG	3 cut(s)	212, 358, 435
BstSCI	CCNGG	4 cut(s)	48, 210, 356, 433
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	130, 215, 582
BtsCI	GGATG	3 cut(s)	625, 658, 880
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	603
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	3 cut(s)	84, 197, 426
Cfr13I	GGNCC	3 cut(s)	353, 728, 808
CseI	GACGC	2 cut(s)	707, 833
Csp6I	GTAC	4 cut(s)	289, 754, 780, 935
CviAII	CATG	2 cut(s)	380, 925
CviQI	GTAC	4 cut(s)	289, 754, 780, 935
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	318, 384, 955
DpnII	GATC	3 cut(s)	316, 382, 953
DraIII	CACNNNGTG	1 cut(s)	187
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	2 cut(s)	460, 528
EarI	CTCTTC	2 cut(s)	460, 528
EciI	GGCGGA	2 cut(s)	68, 252
Eco130I	CCWWGG	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	600
Eco47I	GGWCC	3 cut(s)	353, 728, 808
Eco57I	CTGAAG	3 cut(s)	242, 407, 717
Eco72I	CACGTG	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	808
EcoRII	CCWGG	3 cut(s)	210, 356, 433
EcoT14I	CCWWGG	1 cut(s)	505
EcoT22I	ATGCAT	2 cut(s)	445, 700
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	505
Esp3I	CGTCTC	2 cut(s)	536, 851
FaeI	CATG	2 cut(s)	383, 928
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	2 cut(s)	339, 1004
FatI	CATG	2 cut(s)	379, 924
FauNDI	CATATG	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	5 cut(s)	71, 74, 77, 80, 106
FokI	GGATG	3 cut(s)	632, 665, 887
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	5 cut(s)	71, 74, 77, 80, 106
GluI	GCNGC	5 cut(s)	71, 74, 77, 80, 106
GsaI	CCCAGC	1 cut(s)	856
GsuI	CTGGAG	1 cut(s)	796
HaeIII	GGCC	3 cut(s)	130, 215, 582
HapII	CCGG	2 cut(s)	50, 89
HgaI	GACGC	2 cut(s)	707, 833
Hin1II	CATG	2 cut(s)	383, 928
HindIII	AAGCTT	2 cut(s)	422, 1049
HinfI	GANTC	5 cut(s)	8, 56, 164, 764, 833
HpaII	CCGG	2 cut(s)	50, 89
HphI	GGTGA	2 cut(s)	521, 1018
Hpy166II	GTNNAC	2 cut(s)	324, 787
Hpy188I	TCNGA	5 cut(s)	96, 151, 387, 736, 838
Hpy188III	TCNNGA	1 cut(s)	1044
Hpy8I	GTNNAC	2 cut(s)	324, 787
Hpy99I	CGWCG	2 cut(s)	172, 723
HpyAV	CCTTC	8 cut(s)	41, 141, 217, 382, 477, 699, 741, 872
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	5 cut(s)	195, 364, 443, 603, 698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 76, 79, 425, 896
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	383, 928
Kzo9I	GATC	3 cut(s)	316, 382, 953
LmnI	GCTCC	5 cut(s)	91, 97, 344, 904, 933
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	866
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	5 cut(s)	142, 514, 633, 1006, 1069
MalI	GATC	3 cut(s)	318, 384, 955
MboI	GATC	3 cut(s)	316, 382, 953
MboII	GAAGA	7 cut(s)	166, 169, 326, 447, 545, 919, 1040
MhlI	GDGCHC	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	5 cut(s)	120, 365, 497, 757, 920
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	2 cut(s)	17, 158
MmeI	TCCRAC	2 cut(s)	183, 792
Mox20I	TGGCCA	1 cut(s)	215
Mph1103I	ATGCAT	2 cut(s)	445, 700
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	8 cut(s)	123, 495, 564, 576, 714, 978, 1038, 1075
MslI	CAYNNNNRTG	1 cut(s)	798
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	2 cut(s)	50, 89
MspR9I	CCNGG	4 cut(s)	50, 212, 358, 435
MvaI	CCWGG	3 cut(s)	212, 358, 435
MwoI	GCNNNNNNNGC	5 cut(s)	11, 76, 79, 425, 896
NciI	CCSGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	3 cut(s)	316, 382, 953
NlaIII	CATG	2 cut(s)	383, 928
NlaIV	GGNNCC	2 cut(s)	93, 355
NmeAIII	GCCGAG	1 cut(s)	828
NmuCI	GTSAC	2 cut(s)	142, 1006
NsiI	ATGCAT	2 cut(s)	445, 700
NspV	TTCGAA	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	994
PceI	AGGCCT	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	56, 764, 833
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	5 cut(s)	72, 75, 78, 81, 107
PleI	GAGTC	2 cut(s)	16, 158
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	2 cut(s)	16, 158
Ppu21I	YACGTR	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	808
PshBI	ATTAAT	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	808
Psp6I	CCWGG	3 cut(s)	210, 356, 433
PspCI	CACGTG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	852
PspGI	CCWGG	3 cut(s)	210, 356, 433
PspN4I	GGNNCC	2 cut(s)	93, 355
PspPI	GGNCC	3 cut(s)	353, 728, 808
PspPPI	RGGWCCY	1 cut(s)	808
RsaI	GTAC	4 cut(s)	290, 755, 781, 936
RsaNI	GTAC	4 cut(s)	289, 754, 780, 935
RseI	CAYNNNNRTG	1 cut(s)	798
SaqAI	TTAA	8 cut(s)	123, 495, 564, 576, 714, 978, 1038, 1075
SatI	GCNGC	5 cut(s)	71, 74, 77, 80, 106
Sau3AI	GATC	3 cut(s)	316, 382, 953
Sau96I	GGNCC	3 cut(s)	353, 728, 808
SchI	GAGTC	2 cut(s)	17, 158
ScrFI	CCNGG	4 cut(s)	50, 212, 358, 435
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	1 cut(s)	866
SfuI	TTCGAA	1 cut(s)	312
SinI	GGWCC	3 cut(s)	353, 728, 808
SmiMI	CAYNNNNRTG	1 cut(s)	798
Sse9I	AATT	5 cut(s)	120, 365, 497, 757, 920
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	8 cut(s)	53, 68, 71, 74, 77, 80, 263, 938
SspI	AATATT	1 cut(s)	614
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	4 cut(s)	48, 210, 356, 433
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	4 cut(s)	139, 156, 312, 345
TaqII	GACCGA	3 cut(s)	160, 716, 1033
TasI	AATT	5 cut(s)	120, 365, 497, 757, 920
TauI	GCSGC	4 cut(s)	73, 76, 79, 82
TfiI	GAWTC	3 cut(s)	56, 764, 833
Tru1I	TTAA	8 cut(s)	123, 495, 564, 576, 714, 978, 1038, 1075
Tru9I	TTAA	8 cut(s)	123, 495, 564, 576, 714, 978, 1038, 1075
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	2 cut(s)	142, 1006
TseI	GCWGC	1 cut(s)	105
Tsp45I	GTSAC	2 cut(s)	142, 1006
TspDTI	ATGAA	3 cut(s)	891, 913, 926
TspGWI	ACGGA	2 cut(s)	359, 962
TspRI	CASTG	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	774
VpaK11BI	GGWCC	3 cut(s)	353, 728, 808
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	323
Zsp2I	ATGCAT	2 cut(s)	445, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.