Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006599

Physical Location & Seq

Genomic Coordinates Reverse (-)

101930 .. 104772

Gene Structure 2843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00191.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAAAAAAATGAAAATGAAAAAAAAAGAAAAAAGAGGTGGGAAGGCAGCATATGAGTCATCACACTCGATAGGCATCTACCAGCGAGCGATGGCAGAGTCAGAAGCAGCAGTAGCACCACCCACCCTTCCGAACCCTAACCACCACCCGCCTGAATCTCCACCTCCGCCACCGCCGCCAGCTCCGAATCCGATAGCGAGCTGCATCTCCTCCAAAATCAAAAGGCCTTCGGTCCGAGTGACGTCGGAGTTCGACAGCGACTCGGCGGTGTTCTTCCACAAGGTGTCATGCAAGGTGTTGGACAGTCTGGCCAAGCTGAAGCTCTCCTTCAGCAACGACCACAAGGGCGACCTCTCTCCGCCTCACCTCTCCTTCATCTCTCGCTACCTCTCCCTCCACTACAACTTTGAAGATCAGTCCACTCTCCTCAACAGCTCCATCGATGTTGGTCCCCGTGTGCAGTTCCGTGCTTCCCATGATCTCAAGGCCCAACAAGGCGAGGTCTCAATGGTTACCCAGCTCGCTGACCCTGGCTATGCTCTTCAGCTCTCTTCTCATTTCCCTTCTGCTGGCTTTCCTAAAGCTACCCTTAAATTCCCCCTTGGTGAAGTTACTTTGGAGGAAAAAGAAGAGGAGGAGGCGAACAAAATATTATCTGTGGATGGCATTGTTAAAGCCCAACTTTTGAACGGCCTCTGCACTGCTCGCTATGTACATGACGATTTGAAGTTACGATACTCATTCAAGGATGAGGAGATGTCTTTTATCCCATCTATTTCTCTGCCTTCAAATGCATTGTCATTTGCTTTTAAGCGTCGGTTTGGTCCTTCAGACAAGTTGAGTTACTGGTACAATTTTGATTCCGACTACTGGAGTGCGGTTTACAAGCATACATATGGCAAGGACCTAAAACTTAAAGCTGGTTATGATTCAGAGGTGCGCCTCGGCTGGGCATCTCTTTGGGTTGGGGATGAAGCTGGCAAAGCAAAGACAGCTCCATTGAAGATGAAGGTTCAATTCATGCTCCAAGTACCGCAAGATGACATTAGATCATCAGCCTTGATGTTCCGGGTTAAAAAGAGATGGGACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

40.79

Weight (kDa)

9.17

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43950 AT2G43950
fragaria_vesca	FvH4_1g00191
malus_domestica	MD00G1087400.v1.1 MD09G1202400.v1.1 MD15G1143200.v1.1
prunus_persica	Prupe.7G269800_v2.0.a1 Prupe.7G269800_v2.0.a1
pyrus_communis	pycom15g12930 pycom290g00210
rosa_chinensis	RchiOBHm_Chr2g0084461 RchiOBHm_Chr7g0203201
rosa_laevigata	RLG00000015620
rosa_multiflora	Rmu_sc0009404.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156040
rosa_rugosa	Rorug01G0454200
rosa_samantha	Rh2AG002300 Rh2BG001900 Rh2CG002200 Rh2DG002400 Rh4BG135000 Rh4CG120800 Rh6BG047200
rosa_wichuraiana	Rw0G021540 Rw1G000710 Rw2G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	245
AciI	CCGC	8 cut(s)	149, 167, 173, 176, 266, 359, 878, 1034
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	593
AcuI	CTGAAG	4 cut(s)	313, 338, 527, 813
AcyI	GRCGYC	1 cut(s)	242
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	3 cut(s)	714, 851, 1032
AfiI	CCNNNNNNNGG	3 cut(s)	569, 870, 949
AgsI	TTSAA	7 cut(s)	410, 688, 727, 745, 789, 1003, 1016
AjnI	CCWGG	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	508
AoxI	GGCC	4 cut(s)	224, 309, 486, 691
ApeKI	GCWGC	3 cut(s)	47, 107, 201
ApoI	RAATTY	1 cut(s)	593
ArsI	GACNNNNNNTTYG	2 cut(s)	782, 814
AspLEI	GCGC	1 cut(s)	942
AspS9I	GGNCC	5 cut(s)	232, 449, 487, 824, 904
AsuC2I	CCSGG	1 cut(s)	1070
AsuHPI	GGTGA	2 cut(s)	356, 617
AvaII	GGWCC	4 cut(s)	232, 449, 824, 904
BalI	TGGCCA	1 cut(s)	311
BarI	GAAGNNNNNNTAC	2 cut(s)	719, 751
BbvI	GCAGC	3 cut(s)	59, 119, 188
BccI	CCATC	5 cut(s)	85, 446, 656, 778, 1077
BceAI	ACGGC	1 cut(s)	706
BciT130I	CCWGG	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	1070
BcoDI	GTCTC	1 cut(s)	508
BisI	GCNGC	4 cut(s)	48, 108, 176, 202
BlsI	GCNGC	4 cut(s)	49, 109, 177, 203
Bme1390I	CCNGG	2 cut(s)	531, 1070
Bme18I	GGWCC	4 cut(s)	232, 449, 824, 904
BmgT120I	GGNCC	5 cut(s)	232, 449, 487, 824, 904
BmiI	GGNNCC	1 cut(s)	451
BmrFI	CCNGG	2 cut(s)	531, 1070
BmsI	GCATC	3 cut(s)	84, 213, 962
BpmI	CTGGAG	1 cut(s)	892
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	1070
Bsa29I	ATCGAT	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	3 cut(s)	529, 601, 943
Bsc4I	CCNNNNNNNGG	3 cut(s)	569, 870, 949
Bse1I	ACTGG	2 cut(s)	851, 875
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	529, 601, 943
BseGI	GGATG	3 cut(s)	667, 754, 976
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	3 cut(s)	569, 870, 949
BseNI	ACTGG	2 cut(s)	851, 875
BseRI	GAGGAG	5 cut(s)	199, 416, 647, 650, 767
BseXI	GCAGC	3 cut(s)	59, 119, 188
BseYI	CCCAGC	2 cut(s)	516, 948
BsgI	GTGCAG	2 cut(s)	479, 682
BshFI	GGCC	4 cut(s)	226, 311, 488, 693
BshVI	ATCGAT	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	1069
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	3 cut(s)	569, 870, 949
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	4 cut(s)	226, 311, 488, 693
Bso31I	GGTCTC	1 cut(s)	508
Bsp1407I	TGTACA	1 cut(s)	712
Bsp143I	GATC	3 cut(s)	412, 478, 1049
BspACI	CCGC	8 cut(s)	149, 167, 173, 176, 266, 359, 878, 1034
BspANI	GGCC	4 cut(s)	226, 311, 488, 693
BspDI	ATCGAT	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	546
BspTNI	GGTCTC	1 cut(s)	508
BsrGI	TGTACA	1 cut(s)	712
BsrI	ACTGG	2 cut(s)	851, 875
BssECI	CCNNGG	3 cut(s)	529, 601, 943
BssMI	GATC	3 cut(s)	412, 478, 1049
BssNI	GRCGYC	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	3 cut(s)	546, 556, 624
BstACI	GRCGYC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	712
BstC8I	GCNNGC	7 cut(s)	87, 180, 199, 522, 571, 706, 979
BstEII	GGTNACC	1 cut(s)	511
BstF5I	GGATG	3 cut(s)	667, 754, 976
BstHHI	GCGC	1 cut(s)	942
BstKTI	GATC	3 cut(s)	415, 481, 1052
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	3 cut(s)	412, 478, 1049
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 175, 705, 983, 992
BstNI	CCWGG	1 cut(s)	531
BstPI	GGTNACC	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	529, 1068
BstV1I	GCAGC	3 cut(s)	59, 119, 188
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	4 cut(s)	226, 311, 488, 693
BsuTUI	ATCGAT	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	667, 754, 976
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	7 cut(s)	87, 180, 199, 522, 571, 706, 979
CfoI	GCGC	1 cut(s)	942
Cfr13I	GGNCC	5 cut(s)	232, 449, 487, 824, 904
ClaI	ATCGAT	1 cut(s)	441
CpoI	CGGWCCG	1 cut(s)	232
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	3 cut(s)	713, 850, 1031
CspI	CGGWCCG	1 cut(s)	232
CviAII	CATG	4 cut(s)	288, 476, 716, 1021
CviQI	GTAC	3 cut(s)	713, 850, 1031
DpnI	GATC	3 cut(s)	414, 480, 1051
DpnII	GATC	3 cut(s)	412, 478, 1049
DraIII	CACNNNGTG	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	3 cut(s)	546, 556, 624
EarI	CTCTTC	3 cut(s)	546, 556, 624
EciI	GGCGGA	2 cut(s)	156, 348
Eco130I	CCWWGG	1 cut(s)	601
Eco147I	AGGCCT	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	508
Eco47I	GGWCC	4 cut(s)	232, 449, 824, 904
Eco57I	CTGAAG	4 cut(s)	313, 338, 527, 813
Eco91I	GGTNACC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	904
EcoO65I	GGTNACC	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	601
EcoT22I	ATGCAT	1 cut(s)	796
ErhI	CCWWGG	1 cut(s)	601
FaeI	CATG	4 cut(s)	291, 479, 719, 1024
FalI	AAGNNNNNCTT	6 cut(s)	311, 343, 573, 605, 666, 698
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	4 cut(s)	287, 475, 715, 1020
FauI	CCCGC	1 cut(s)	156
FauNDI	CATATG	2 cut(s)	52, 895
Fnu4HI	GCNGC	4 cut(s)	48, 108, 176, 202
FokI	GGATG	3 cut(s)	674, 761, 983
Fsp4HI	GCNGC	4 cut(s)	48, 108, 176, 202
GlaI	GCGC	1 cut(s)	941
GluI	GCNGC	4 cut(s)	48, 108, 176, 202
GsaI	CCCAGC	2 cut(s)	520, 952
GsuI	CTGGAG	1 cut(s)	892
HaeIII	GGCC	4 cut(s)	226, 311, 488, 693
HapII	CCGG	1 cut(s)	1069
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	1 cut(s)	942
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	291, 479, 719, 1024
Hin6I	GCGC	1 cut(s)	940
HinP1I	GCGC	1 cut(s)	940
HinfI	GANTC	7 cut(s)	56, 98, 155, 187, 260, 860, 929
HpaII	CCGG	1 cut(s)	1069
HphI	GGTGA	2 cut(s)	356, 617
Hpy166II	GTNNAC	2 cut(s)	420, 883
Hpy188I	TCNGA	9 cut(s)	103, 132, 186, 192, 236, 247, 832, 865, 934
Hpy8I	GTNNAC	2 cut(s)	420, 883
Hpy99I	CGWCG	2 cut(s)	247, 819
HpyAV	CCTTC	9 cut(s)	37, 137, 237, 337, 382, 573, 795, 837, 1003
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	5 cut(s)	204, 291, 460, 699, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 175, 705, 983, 992
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	4 cut(s)	291, 479, 719, 1024
HspAI	GCGC	1 cut(s)	940
Kzo9I	GATC	3 cut(s)	412, 478, 1049
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	4 cut(s)	187, 440, 1000, 1029
Lsp1109I	GCAGC	3 cut(s)	59, 119, 188
LweI	GCATC	3 cut(s)	84, 213, 962
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	5 cut(s)	238, 511, 610, 729, 842
MalI	GATC	3 cut(s)	414, 480, 1051
MboI	GATC	3 cut(s)	412, 478, 1049
MboII	GAAGA	6 cut(s)	265, 422, 533, 543, 641, 1015
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	3 cut(s)	593, 853, 1016
MluNI	TGGCCA	1 cut(s)	311
MlyI	GAGTC	3 cut(s)	65, 107, 254
MmeI	TCCRAC	3 cut(s)	225, 279, 888
Mox20I	TGGCCA	1 cut(s)	311
Mph1103I	ATGCAT	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	5 cut(s)	591, 672, 810, 915, 1074
MslI	CAYNNNNRTG	1 cut(s)	894
Msp20I	TGGCCA	1 cut(s)	311
MspI	CCGG	1 cut(s)	1069
MspR9I	CCNGG	2 cut(s)	531, 1070
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	5 cut(s)	113, 175, 705, 983, 992
NciI	CCSGG	1 cut(s)	1070
NdeI	CATATG	2 cut(s)	52, 895
NdeII	GATC	3 cut(s)	412, 478, 1049
NlaIII	CATG	4 cut(s)	291, 479, 719, 1024
NlaIV	GGNNCC	1 cut(s)	451
NmeAIII	GCCGAG	2 cut(s)	242, 924
NmuCI	GTSAC	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	796
PceI	AGGCCT	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	546
PfeI	GAWTC	4 cut(s)	155, 187, 860, 929
PkrI	GCNGC	4 cut(s)	49, 109, 177, 203
PleI	GAGTC	3 cut(s)	64, 106, 254
PpsI	GAGTC	3 cut(s)	64, 106, 254
PpuMI	RGGWCCY	1 cut(s)	904
Psp5II	RGGWCCY	1 cut(s)	904
Psp6I	CCWGG	1 cut(s)	529
PspEI	GGTNACC	1 cut(s)	511
PspFI	CCCAGC	2 cut(s)	516, 948
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	451
PspPI	GGNCC	5 cut(s)	232, 449, 487, 824, 904
PspPPI	RGGWCCY	1 cut(s)	904
RsaI	GTAC	3 cut(s)	714, 851, 1032
RsaNI	GTAC	3 cut(s)	713, 850, 1031
RseI	CAYNNNNRTG	1 cut(s)	894
Rsr2I	CGGWCCG	1 cut(s)	232
RsrII	CGGWCCG	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	5 cut(s)	591, 672, 810, 915, 1074
SatI	GCNGC	4 cut(s)	48, 108, 176, 202
Sau3AI	GATC	3 cut(s)	412, 478, 1049
Sau96I	GGNCC	5 cut(s)	232, 449, 487, 824, 904
SchI	GAGTC	3 cut(s)	65, 107, 254
ScrFI	CCNGG	2 cut(s)	531, 1070
SfaNI	GCATC	3 cut(s)	84, 213, 962
SinI	GGWCC	4 cut(s)	232, 449, 824, 904
SmiMI	CAYNNNNRTG	1 cut(s)	894
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	3 cut(s)	593, 853, 1016
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	8 cut(s)	149, 167, 173, 176, 266, 359, 878, 1034
SspI	AATATT	1 cut(s)	651
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	529, 1068
StyI	CCWWGG	1 cut(s)	601
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	3 cut(s)	68, 252, 441
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	593, 853, 1016
TatI	WGTACW	1 cut(s)	712
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	4 cut(s)	155, 187, 860, 929
Tru1I	TTAA	5 cut(s)	591, 672, 810, 915, 1074
Tru9I	TTAA	5 cut(s)	591, 672, 810, 915, 1074
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	3 cut(s)	47, 107, 201
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	7 cut(s)	17, 26, 32, 364, 987, 1009, 1022
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	706
VpaK11BI	GGWCC	4 cut(s)	232, 449, 824, 904
XapI	RAATTY	1 cut(s)	593
ZraI	GACGTC	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.