Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Forward (+)

18414201 .. 18415335

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCACTGAGAAATGCAATTCTTCGTCACCTGAGGGTTCCGGTGCAAACCCTAGGATTGAATCAGTCTAAAATTGGGTTCCTTGGTACGATCCGGTCATTTTCTTCGCACGATGATCATCTTAGCAGAGAAGCTGTCGTCGATAGAGTACTCGATGTTGTCAAGAGCTTCCCCAAAGTCGATCCCTCTAAGGTGACTCCTGAGGTTCATTTCCAAAACGATTTGGGATTAGATAGTTTGGACACAGTGGAGATAGTGATGGCTATTGAAGAGGAATTCAAGCTGGAAATTCCAGACAAAGAAGCTGACAAGATCGATTCTTGCTCTCTCGCCATTGAATACGTTTACAATCATCCAATGTCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

122

Amino Acids

13.72

Weight (kDa)

5.1

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	48 - 102	8.7e-11	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	85, 176
AcsI	RAATTY	2 cut(s)	275, 288
AfaI	GTAC	2 cut(s)	88, 150
AgsI	TTSAA	4 cut(s)	61, 269, 280, 338
AluBI	AGCT	5 cut(s)	134, 168, 283, 305, 366
AluI	AGCT	5 cut(s)	134, 168, 283, 305, 366
AlwI	GGATC	2 cut(s)	85, 176
ApoI	RAATTY	2 cut(s)	275, 288
AspA2I	CCTAGG	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	20, 205
AvrII	CCTAGG	1 cut(s)	52
AxyI	CCTNAGG	2 cut(s)	32, 201
BccI	CCATC	1 cut(s)	253
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	2 cut(s)	53, 363
BlnI	CCTAGG	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	39, 80
Bsa29I	ATCGAT	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	52, 82
BsaWI	WCCGGW	2 cut(s)	40, 93
Bse21I	CCTNAGG	2 cut(s)	32, 201
Bse8I	GATNNNNATC	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	52, 82
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	23, 192
BshVI	ATCGAT	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	41, 94
Bsp143I	GATC	4 cut(s)	90, 115, 181, 312
BspCNI	CTCAG	2 cut(s)	24, 193
BspDI	ATCGAT	1 cut(s)	315
BspLI	GGNNCC	2 cut(s)	39, 80
BspPI	GGATC	2 cut(s)	85, 176
BssECI	CCNNGG	2 cut(s)	52, 82
BssMI	GATC	4 cut(s)	90, 115, 181, 312
BssT1I	CCWWGG	2 cut(s)	52, 82
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	264
BstDEI	CTNAG	5 cut(s)	8, 32, 122, 189, 201
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	4 cut(s)	93, 118, 184, 315
BstMBI	GATC	4 cut(s)	90, 115, 181, 312
Bsu15I	ATCGAT	1 cut(s)	315
Bsu36I	CCTNAGG	2 cut(s)	32, 201
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	5, 252
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	87, 149
CviJI	RGCY	6 cut(s)	134, 168, 263, 283, 305, 366
CviKI_1	RGCY	6 cut(s)	134, 168, 263, 283, 305, 366
CviQI	GTAC	2 cut(s)	87, 149
DdeI	CTNAG	5 cut(s)	8, 32, 122, 189, 201
DpnI	GATC	4 cut(s)	92, 117, 183, 314
DpnII	GATC	4 cut(s)	90, 115, 181, 312
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	2 cut(s)	52, 82
Eco81I	CCTNAGG	2 cut(s)	32, 201
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	2 cut(s)	52, 82
ErhI	CCWWGG	2 cut(s)	52, 82
FbaI	TGATCA	1 cut(s)	115
FokI	GGATG	1 cut(s)	339
FspBI	CTAG	2 cut(s)	53, 363
HapII	CCGG	2 cut(s)	41, 94
HinfI	GANTC	3 cut(s)	61, 196, 317
HpaII	CCGG	2 cut(s)	41, 94
HphI	GGTGA	2 cut(s)	20, 205
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188III	TCNNGA	3 cut(s)	163, 200, 293
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	17, 46
HpyF3I	CTNAG	5 cut(s)	8, 32, 122, 189, 201
HpySE526I	ACGT	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	90, 115, 181, 312
LpnPI	CCDG	6 cut(s)	44, 54, 107, 213, 269, 306
MaeI	CTAG	2 cut(s)	53, 363
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	26, 193
MalI	GATC	4 cut(s)	92, 117, 183, 314
MboI	GATC	4 cut(s)	90, 115, 181, 312
MboII	GAAGA	3 cut(s)	14, 96, 281
MluCI	AATT	4 cut(s)	18, 72, 275, 288
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	4 cut(s)	27, 196, 196, 265
MspI	CCGG	2 cut(s)	41, 94
NdeII	GATC	4 cut(s)	90, 115, 181, 312
NlaIV	GGNNCC	2 cut(s)	39, 80
NmuCI	GTSAC	2 cut(s)	26, 193
PfeI	GAWTC	2 cut(s)	61, 317
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	39, 80
RsaI	GTAC	2 cut(s)	88, 150
RsaNI	GTAC	2 cut(s)	87, 149
Sau3AI	GATC	4 cut(s)	90, 115, 181, 312
ScaI	AGTACT	1 cut(s)	150
SchI	GAGTC	1 cut(s)	190
SetI	ASST	9 cut(s)	33, 136, 170, 195, 207, 285, 307, 345, 368
Sse9I	AATT	4 cut(s)	18, 72, 275, 288
SspMI	CTAG	2 cut(s)	53, 363
StyI	CCWWGG	2 cut(s)	52, 82
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	4 cut(s)	141, 153, 180, 315
TasI	AATT	4 cut(s)	18, 72, 275, 288
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	61, 317
TscAI	CASTG	2 cut(s)	12, 252
TseFI	GTSAC	2 cut(s)	26, 193
Tsp45I	GTSAC	2 cut(s)	26, 193
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	12, 252
XapI	RAATTY	2 cut(s)	275, 288
XmaJI	CCTAGG	1 cut(s)	52
XspI	CTAG	2 cut(s)	53, 363
ZrmI	AGTACT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.