Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Forward (+)

23269391 .. 23275294

Gene Structure 5904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0171100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGGTTTCAGTCCTGCGGGCGGCGGCGGTGGCGGTGGTACGAGCAATGGTACCGGGAATAATAGCACCAGTAATATTAATAATAATAGTAATAATAGTAGCTGCTGCAACATGAGCCTCAAGTGTAGGTGTAAATGGAGGTGCCTGATGTCGTCGGGGTTCGTTTTCTTCTTCGGCTGTTTTGTGTTGTTTGGATCAGTCGCTACGATTTATGTGTGGTTTGCTTTCACGCCGTATTATTACGCTCGGACCACGGCGGTGGAGTCTTCGTCGTCGGCCGCCGTGCTTGGGTGTCAGGAGGACAATGAAGGTTCTTGGTCCGTTGGCGTTTTCTTCGGTGACTCTCCCTTTAATCTCAAGCCCATTGAAGCTACGAATGTATGGAGAGACAAGAGTGCCGCCTGGCCTGTGGCAAACCCTGTTGTGACTTGTGCTTCAGTTTCTGAATCTGGTTTCCCAAGTAATTTTGTTGCTGATCCTTTCCTTTATGTCCAGGGAGATACTTTGTACATGTTCTATGAAACCAAAAATTCAATCACTATGCAAGGAGATATTGGGGTTTCAAAAAGCTCTGATAAAGGAGCAACATGGCAGCAATTAGGCATTGCCTTGGATGAAGAGTGGCATCTCTCTTATCCATATGTCTTTCACTACCTTGGCCATATATATATGATGCCTGAAAGCAGCACGAATGGTGAAGTTCGTCTCTATCGAGCCCTCAGTTTTCCCATGCAATGGACTCTAGAAAAGGTGATCTTGAAAAAGCCTCTTGTCGACTCATTCCTTATCAATTACGATGGAGCCTATTGGCTTTTCGGTTCAGACCACAGTGGATTTGGCACCACAAAGAATGGACAGTTGGAAATCTGGTACAGTAGCTCGCCTTTGGGTCCTTGGAAACCACACAAGAAGAACCCTATATATAATGGTGACAAGAGCTTTGGGGCTCGAAATGGAGGCAGACCATTTTTTTACAACGGGAATCTCTATCGCTTTGGTCAAGACTGTGCTGAAACGTATGGGAGACGTGTGCGCACCTTTAAGGTGGAAGTTCTTACCAAAGATGAATATAAGGAAGTTGAAGTCCCGTTGGGCCTTCCTAAGCCAAGTAAGGGTCGCAATGCTTGGAATGGTGTTCGCTTCCATCATCTCGATGTGCAACAACTAAATACTGGAGGGTGGATTGCAGTAATGGATGGAGACCGTGTACCTTCTGGAGATTCTGTACACAGGTTTATTGTTGGTAGTGCTTCAGTTGCCATTGTCGCTATACTTGTTATCTTACTAGGTGTACTACTTGGAGCTGTGAAGTGCATGATTCCCCCCAATTGGTGCACTCACAACTCGGGTAAGAGAAGTGATGCATTCTTGGCTTGTGAAAGGTCATATCTGTGTTCGTCCAAACTGAGACGTTTTTGCAGCCGCTTGAACAGAGCAGTTTCATTCCTCAGAGGTAGGATTAAGCCTAATACCTGTGCTGGAAGACTAGTTCTTGCTATATATTTGGCATTTGGAGTGGCAGCTATGTGCACAGGGGTTAAATATATCTATGGCGGCAGCGGTGCAGAAGAAGCTTACCCATTAAAAGGTCATTACTCACAGTTCACATTATTAACAATGACTTATGATGCTCGTCTCTGGAATTTGAAAATGTATGTTAAACACTATTCTAGATGTTCATCGGTAAGAGAAATTGTTGTGGTGTGGAACAAGGGTATACCTCCTGAAGCGAGTGATTTTGACTCTGCTGTGCCAGTTAGGATCAGAGTAGAGAAACAGAACTCCCTGAATAACCGGTTCAAGTTGGATTCTTTGATAAAGACTCGAGCTGTTCTGGAGCTTGATGACGACATTATGATGACCTGCAATGATATTGAGAGAGGATTCAGGATATGGCGTCAACACCCGGATCGTATTGTGGGTTTCTACCCCCGGCTCATTGATGGAAGTCCATTGAAGTACAGAGGTGAGAAACATGCTCGGAGTCATAGAGGCTATAATATGATTCTCACTGGGGCAGCTTTCCTTGATAGCCAAGTTGCTTTTAAGAGGTATTGGAGTGAAGAAGCTAGCCCAGGGAGGGACTTTGTGGACAAGTCTTTCAATTGCGAGGACGTGCTTATGAATTACCTGTATGCAAATGCTAGCTCATCTCAGAATGTGGAGTATGTGAGGCCAGCATGGGCGATAGATACGTCGAAGTTATCTGGTGCTGCTATTAGCCGAAATACCCAAGTTCACTACAACAAGAGGAGCAACTGCCTGGTGAAATTTTCTGAAATGTATGGAACTTTGGCTGGGCGCAAGTGGGAATTTGATGGGCGGAAGGATGGGTGGGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

781

Amino Acids

87.56

Weight (kDa)

9.03

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GINT1_N	PF24793	98 - 401	2.1e-178	Glucosamine inositolphosphorylceramide transferase 1, N-terminal
Glyco_transf_64	PF09258	535 - 770	2.1e-63	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1034
Acc36I	ACCTGC	1 cut(s)	1871
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	3 cut(s)	50, 141, 839
AccB7I	CCANNNNNTGG	1 cut(s)	735
AccI	GTMKAC	2 cut(s)	774, 1717
AclWI	GGATC	4 cut(s)	202, 470, 1769, 1917
AcoI	YGGCCR	2 cut(s)	276, 658
AcsI	RAATTY	4 cut(s)	529, 1642, 2270, 2312
AcuI	CTGAAG	3 cut(s)	420, 1236, 1746
AcyI	GRCGYC	1 cut(s)	1897
AfaI	GTAC	8 cut(s)	40, 52, 509, 872, 1209, 1227, 1293, 1961
AfiI	CCNNNNNNNGG	7 cut(s)	20, 288, 735, 1112, 1329, 1586, 2080
AflIII	ACRYGT	2 cut(s)	510, 1027
AgeI	ACCGGT	1 cut(s)	1794
AhlI	ACTAGT	1 cut(s)	1486
AjiI	CACGTC	2 cut(s)	1028, 2116
AjnI	CCWGG	4 cut(s)	401, 492, 2074, 2262
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AleI	CACNNNNGTG	1 cut(s)	257
AloI	GAACNNNNNNTCC	2 cut(s)	1473, 1505
Alw21I	GWGCWC	2 cut(s)	1337, 1532
Alw26I	GTCTC	6 cut(s)	381, 710, 1018, 1194, 1402, 1640
Alw44I	GTGCAC	2 cut(s)	1333, 1528
AlwI	GGATC	4 cut(s)	202, 470, 1769, 1917
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	2 cut(s)	1345, 1824
AoxI	GGCC	5 cut(s)	276, 404, 658, 1093, 2174
ApaLI	GTGCAC	2 cut(s)	1333, 1528
ApeKI	GCWGC	9 cut(s)	102, 105, 592, 684, 1419, 1520, 1557, 2018, 2213
ApoI	RAATTY	4 cut(s)	529, 1642, 2270, 2312
ArsI	GACNNNNNNTTYG	2 cut(s)	923, 955
AseI	ATTAAT	1 cut(s)	78
AsiGI	ACCGGT	1 cut(s)	1794
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	1035, 2304
AspS9I	GGNCC	4 cut(s)	249, 318, 890, 1093
AsuC2I	CCSGG	3 cut(s)	55, 1907, 1933
AsuHPI	GGTGA	6 cut(s)	350, 707, 763, 941, 1979, 2278
AsuNHI	GCTAGC	2 cut(s)	2069, 2144
AvaI	CYCGRG	2 cut(s)	1345, 1824
AvaII	GGWCC	3 cut(s)	249, 318, 890
BaeGI	GKGCMC	2 cut(s)	1337, 1532
BalI	TGGCCA	1 cut(s)	660
BanI	GGYRCC	3 cut(s)	50, 141, 839
BanII	GRGCYC	2 cut(s)	718, 949
BbsI	GAAGAC	2 cut(s)	258, 1489
Bbv12I	GWGCWC	2 cut(s)	1337, 1532
BbvI	GCAGC	9 cut(s)	89, 92, 604, 696, 1431, 1532, 1569, 2030, 2200
BccI	CCATC	6 cut(s)	791, 1152, 1190, 1937, 2312, 2324
BceAI	ACGGC	3 cut(s)	217, 266, 270
BciT130I	CCWGG	4 cut(s)	403, 494, 2076, 2264
BcnI	CCSGG	3 cut(s)	55, 1907, 1933
BcoDI	GTCTC	6 cut(s)	381, 710, 1018, 1194, 1402, 1640
BcuI	ACTAGT	1 cut(s)	1486
BfaI	CTAG	6 cut(s)	743, 1286, 1487, 1671, 2070, 2145
BfuAI	ACCTGC	1 cut(s)	1871
Bme1390I	CCNGG	7 cut(s)	55, 403, 494, 1907, 1933, 2076, 2264
Bme18I	GGWCC	3 cut(s)	249, 318, 890
BmeT110I	CYCGRG	2 cut(s)	1345, 1824
BmgBI	CACGTC	2 cut(s)	1028, 2116
BmgT120I	GGNCC	4 cut(s)	249, 318, 890, 1093
BmiI	GGNNCC	5 cut(s)	52, 143, 802, 841, 891
BmrFI	CCNGG	7 cut(s)	55, 403, 494, 1907, 1933, 2076, 2264
BmrI	ACTGGG	1 cut(s)	2022
BmsI	GCATC	4 cut(s)	634, 663, 1351, 1618
BmtI	GCTAGC	2 cut(s)	2073, 2148
BmuI	ACTGGG	1 cut(s)	2022
BpiI	GAAGAC	2 cut(s)	258, 1489
BpmI	CTGGAG	3 cut(s)	1194, 1236, 1856
Bpu10I	CCTNAGC	1 cut(s)	1101
BpuEI	CTTGAG	2 cut(s)	104, 341
BpuMI	CCSGG	3 cut(s)	55, 1907, 1933
BsaBI	GATNNNNATC	1 cut(s)	1678
BsaHI	GRCGYC	1 cut(s)	1897
BsaI	GGTCTC	1 cut(s)	1194
BsaJI	CCNNGG	8 cut(s)	252, 493, 609, 655, 893, 1931, 2074, 2075
BsaWI	WCCGGW	1 cut(s)	1794
BsaXI	ACNNNNNCTCC	6 cut(s)	254, 284, 1191, 1209, 1221, 1239
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 288, 735, 1112, 1329, 1586, 2080
Bse118I	RCCGGY	1 cut(s)	1794
Bse1I	ACTGG	4 cut(s)	69, 1177, 1754, 2017
Bse3DI	GCAATG	5 cut(s)	52, 603, 740, 1126, 1873
Bse8I	GATNNNNATC	1 cut(s)	1678
BseBI	CCWGG	4 cut(s)	403, 494, 2076, 2264
BseDI	CCNNGG	8 cut(s)	252, 493, 609, 655, 893, 1931, 2074, 2075
BseGI	GGATG	4 cut(s)	619, 1201, 2335, 2344
BseJI	GATNNNNATC	1 cut(s)	1678
BseLI	CCNNNNNNNGG	7 cut(s)	20, 288, 735, 1112, 1329, 1586, 2080
BseMI	GCAATG	5 cut(s)	52, 603, 740, 1126, 1873
BseMII	CTCAG	4 cut(s)	733, 1397, 1462, 2168
BseNI	ACTGG	4 cut(s)	69, 1177, 1754, 2017
BseRI	GAGGAG	1 cut(s)	2266
BseSI	GKGCMC	2 cut(s)	1337, 1532
BseX3I	CGGCCG	1 cut(s)	276
BseXI	GCAGC	9 cut(s)	89, 92, 604, 696, 1431, 1532, 1569, 2030, 2200
BseYI	CCCAGC	1 cut(s)	2297
BsgI	GTGCAG	1 cut(s)	1584
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	5 cut(s)	278, 406, 660, 1095, 2176
BshNI	GGYRCC	3 cut(s)	50, 141, 839
BshTI	ACCGGT	1 cut(s)	1794
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	1337, 1532
BsiHKCI	CYCGRG	2 cut(s)	1345, 1824
BsiSI	CCGG	4 cut(s)	54, 1795, 1907, 1933
BslFI	GGGAC	2 cut(s)	1070, 2096
BslI	CCNNNNNNNGG	7 cut(s)	20, 288, 735, 1112, 1329, 1586, 2080
BsmAI	GTCTC	6 cut(s)	381, 710, 1018, 1194, 1402, 1640
BsmBI	CGTCTC	4 cut(s)	710, 1018, 1402, 1640
BsmFI	GGGAC	2 cut(s)	1070, 2096
BsmI	GAATGC	1 cut(s)	1364
BsnI	GGCC	5 cut(s)	278, 406, 660, 1095, 2176
Bso31I	GGTCTC	1 cut(s)	1194
BsoBI	CYCGRG	2 cut(s)	1345, 1824
Bsp1286I	GDGCHC	4 cut(s)	718, 949, 1337, 1532
Bsp1407I	TGTACA	2 cut(s)	507, 1225
Bsp143I	GATC	5 cut(s)	194, 475, 753, 1761, 1909
BspANI	GGCC	5 cut(s)	278, 406, 660, 1095, 2176
BspCNI	CTCAG	4 cut(s)	732, 1398, 1461, 2167
BspLI	GGNNCC	5 cut(s)	52, 143, 802, 841, 891
BspMI	ACCTGC	1 cut(s)	1871
BspOI	GCTAGC	2 cut(s)	2073, 2148
BspPI	GGATC	4 cut(s)	202, 470, 1769, 1917
BspT107I	GGYRCC	3 cut(s)	50, 141, 839
BspTNI	GGTCTC	1 cut(s)	1194
BsrDI	GCAATG	5 cut(s)	52, 603, 740, 1126, 1873
BsrFI	RCCGGY	1 cut(s)	1794
BsrGI	TGTACA	2 cut(s)	507, 1225
BsrI	ACTGG	4 cut(s)	69, 1177, 1754, 2017
BssAI	RCCGGY	1 cut(s)	1794
BssECI	CCNNGG	8 cut(s)	252, 493, 609, 655, 893, 1931, 2074, 2075
BssMI	GATC	5 cut(s)	194, 475, 753, 1761, 1909
BssNAI	GTATAC	1 cut(s)	1718
BssNI	GRCGYC	1 cut(s)	1897
BssT1I	CCWWGG	3 cut(s)	609, 655, 893
Bst1107I	GTATAC	1 cut(s)	1718
Bst2UI	CCWGG	4 cut(s)	403, 494, 2076, 2264
Bst4CI	ACNGT	6 cut(s)	830, 858, 875, 1007, 1205, 1602
Bst6I	CTCTTC	1 cut(s)	612
BstACI	GRCGYC	1 cut(s)	1897
BstAUI	TGTACA	2 cut(s)	507, 1225
BstC8I	GCNNGC	5 cut(s)	19, 881, 2071, 2146, 2178
BstDEI	CTNAG	5 cut(s)	719, 1101, 1406, 1448, 2154
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	4 cut(s)	619, 1201, 2335, 2344
BstHHI	GCGC	2 cut(s)	1035, 2304
BstKTI	GATC	5 cut(s)	197, 478, 756, 1764, 1912
BstMAI	GTCTC	6 cut(s)	381, 710, 1018, 1194, 1402, 1640
BstMBI	GATC	5 cut(s)	194, 475, 753, 1761, 1909
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 114, 1256, 1265, 1370, 1571
BstNI	CCWGG	4 cut(s)	403, 494, 2076, 2264
BstNSI	RCATGY	2 cut(s)	514, 1979
BstSCI	CCNGG	7 cut(s)	53, 401, 492, 1905, 1931, 2074, 2262
BstSLI	GKGCMC	2 cut(s)	1337, 1532
BstV1I	GCAGC	9 cut(s)	89, 92, 604, 696, 1431, 1532, 1569, 2030, 2200
BstV2I	GAAGAC	2 cut(s)	258, 1489
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	1718
BstZI	CGGCCG	1 cut(s)	276
BsuRI	GGCC	5 cut(s)	278, 406, 660, 1095, 2176
BtgI	CCRYGG	1 cut(s)	252
BtrI	CACGTC	2 cut(s)	1028, 2116
BtsCI	GGATG	4 cut(s)	619, 1201, 2335, 2344
BtsIMutI	CAGTG	2 cut(s)	835, 2010
BveI	ACCTGC	1 cut(s)	1871
Cac8I	GCNNGC	5 cut(s)	19, 881, 2071, 2146, 2178
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	2 cut(s)	1035, 2304
Cfr10I	RCCGGY	1 cut(s)	1794
Cfr13I	GGNCC	4 cut(s)	249, 318, 890, 1093
CseI	GACGC	1 cut(s)	1886
Csp6I	GTAC	8 cut(s)	39, 51, 508, 871, 1208, 1226, 1292, 1960
CspAI	ACCGGT	1 cut(s)	1794
CviAII	CATG	7 cut(s)	112, 511, 588, 730, 1315, 1976, 2181
CviQI	GTAC	8 cut(s)	39, 51, 508, 871, 1208, 1226, 1292, 1960
DdeI	CTNAG	5 cut(s)	719, 1101, 1406, 1448, 2154
DpnI	GATC	5 cut(s)	196, 477, 755, 1763, 1911
DpnII	GATC	5 cut(s)	194, 475, 753, 1761, 1909
EaeI	YGGCCR	2 cut(s)	276, 658
EagI	CGGCCG	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
EciI	GGCGGA	1 cut(s)	2338
EclXI	CGGCCG	1 cut(s)	276
Eco130I	CCWWGG	3 cut(s)	609, 655, 893
Eco24I	GRGCYC	2 cut(s)	718, 949
Eco31I	GGTCTC	1 cut(s)	1194
Eco47I	GGWCC	3 cut(s)	249, 318, 890
Eco52I	CGGCCG	1 cut(s)	276
Eco57I	CTGAAG	3 cut(s)	420, 1236, 1746
Eco88I	CYCGRG	2 cut(s)	1345, 1824
EcoO109I	RGGNCCY	1 cut(s)	890
EcoRII	CCWGG	4 cut(s)	401, 492, 2074, 2262
EcoT14I	CCWWGG	3 cut(s)	609, 655, 893
EcoT22I	ATGCAT	1 cut(s)	1366
EcoT38I	GRGCYC	2 cut(s)	718, 949
ErhI	CCWWGG	3 cut(s)	609, 655, 893
Esp3I	CGTCTC	4 cut(s)	710, 1018, 1402, 1640
FaeI	CATG	7 cut(s)	115, 514, 591, 733, 1318, 1979, 2184
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	2 cut(s)	1070, 2096
FatI	CATG	7 cut(s)	111, 510, 587, 729, 1314, 1975, 2180
FauI	CCCGC	1 cut(s)	10
FauNDI	CATATG	1 cut(s)	640
FblI	GTMKAC	2 cut(s)	774, 1717
FokI	GGATG	3 cut(s)	626, 1208, 2342
FriOI	GRGCYC	2 cut(s)	718, 949
FspAI	RTGCGCAY	1 cut(s)	1034
FspBI	CTAG	6 cut(s)	743, 1286, 1487, 1671, 2070, 2145
FspI	TGCGCA	1 cut(s)	1034
GlaI	GCGC	2 cut(s)	1034, 2303
GsaI	CCCAGC	1 cut(s)	2301
GsuI	CTGGAG	3 cut(s)	1194, 1236, 1856
HaeIII	GGCC	5 cut(s)	278, 406, 660, 1095, 2176
HapII	CCGG	4 cut(s)	54, 1795, 1907, 1933
HgaI	GACGC	1 cut(s)	1886
HhaI	GCGC	2 cut(s)	1035, 2304
Hin1I	GRCGYC	1 cut(s)	1897
Hin1II	CATG	7 cut(s)	115, 514, 591, 733, 1318, 1979, 2184
Hin6I	GCGC	2 cut(s)	1033, 2302
HinP1I	GCGC	2 cut(s)	1033, 2302
HincII	GTYRAC	2 cut(s)	775, 1901
HindII	GTYRAC	2 cut(s)	775, 1901
HindIII	AAGCTT	1 cut(s)	1572
HpaII	CCGG	4 cut(s)	54, 1795, 1907, 1933
HphI	GGTGA	6 cut(s)	350, 707, 763, 941, 1979, 2278
Hpy188I	TCNGA	9 cut(s)	249, 445, 574, 823, 1451, 1766, 1983, 2157, 2278
Hpy99I	CGWCG	4 cut(s)	157, 274, 277, 2200
HpyAV	CCTTC	4 cut(s)	302, 1106, 1221, 2320
HpyCH4III	ACNGT	6 cut(s)	830, 858, 875, 1007, 1205, 1602
HpyCH4IV	ACGT	5 cut(s)	1016, 1027, 1411, 2115, 2195
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 114, 1256, 1265, 1370, 1571
HpyF3I	CTNAG	5 cut(s)	719, 1101, 1406, 1448, 2154
HpySE526I	ACGT	5 cut(s)	1016, 1027, 1411, 2115, 2195
Hsp92I	GRCGYC	1 cut(s)	1897
Hsp92II	CATG	7 cut(s)	115, 514, 591, 733, 1318, 1979, 2184
HspAI	GCGC	2 cut(s)	1033, 2302
KpnI	GGTACC	1 cut(s)	54
Kzo9I	GATC	5 cut(s)	194, 475, 753, 1761, 1909
LmnI	GCTCC	5 cut(s)	581, 800, 1301, 1837, 2253
Lsp1109I	GCAGC	9 cut(s)	89, 92, 604, 696, 1431, 1532, 1569, 2030, 2200
LweI	GCATC	4 cut(s)	634, 663, 1351, 1618
MaeI	CTAG	6 cut(s)	743, 1286, 1487, 1671, 2070, 2145
MaeII	ACGT	5 cut(s)	1016, 1027, 1411, 2115, 2195
MaeIII	GTNAC	3 cut(s)	338, 424, 929
MalI	GATC	5 cut(s)	196, 477, 755, 1763, 1911
MboI	GATC	5 cut(s)	194, 475, 753, 1761, 1909
MboII	GAAGA	9 cut(s)	160, 163, 258, 325, 629, 922, 1494, 1580, 2075
MfeI	CAATTG	2 cut(s)	1327, 2104
MhlI	GDGCHC	4 cut(s)	718, 949, 1337, 1532
MlsI	TGGCCA	1 cut(s)	660
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	7 cut(s)	272, 335, 733, 770, 1736, 1816, 1993
MmeI	TCCRAC	2 cut(s)	840, 1785
Mox20I	TGGCCA	1 cut(s)	660
Mph1103I	ATGCAT	1 cut(s)	1366
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	9 cut(s)	78, 351, 1041, 1461, 1539, 1583, 1613, 1659, 2046
MslI	CAYNNNNRTG	4 cut(s)	257, 1152, 1390, 1856
Msp20I	TGGCCA	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	1560
MspI	CCGG	4 cut(s)	54, 1795, 1907, 1933
MspR9I	CCNGG	7 cut(s)	55, 403, 494, 1907, 1933, 2076, 2264
MunI	CAATTG	2 cut(s)	1327, 2104
Mva1269I	GAATGC	1 cut(s)	1364
MvaI	CCWGG	4 cut(s)	403, 494, 2076, 2264
MwoI	GCNNNNNNNGC	6 cut(s)	30, 114, 1256, 1265, 1370, 1571
NciI	CCSGG	3 cut(s)	55, 1907, 1933
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	5 cut(s)	194, 475, 753, 1761, 1909
NheI	GCTAGC	2 cut(s)	2069, 2144
NlaIII	CATG	7 cut(s)	115, 514, 591, 733, 1318, 1979, 2184
NlaIV	GGNNCC	5 cut(s)	52, 143, 802, 841, 891
NmuCI	GTSAC	3 cut(s)	338, 424, 929
NsbI	TGCGCA	1 cut(s)	1034
NsiI	ATGCAT	1 cut(s)	1366
NspI	RCATGY	2 cut(s)	514, 1979
OliI	CACNNNNGTG	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	1824
PasI	CCCWGGG	1 cut(s)	2075
PciI	ACATGT	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	709
PctI	GAATGC	1 cut(s)	1364
PfeI	GAWTC	7 cut(s)	446, 982, 1220, 1318, 1808, 1884, 2005
PflMI	CCANNNNNTGG	1 cut(s)	735
PinAI	ACCGGT	1 cut(s)	1794
PleI	GAGTC	7 cut(s)	271, 335, 733, 770, 1736, 1816, 1992
PpsI	GAGTC	7 cut(s)	271, 335, 733, 770, 1736, 1816, 1992
PpuMI	RGGWCCY	1 cut(s)	890
PscI	ACATGT	1 cut(s)	510
PshBI	ATTAAT	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	890
Psp6I	CCWGG	4 cut(s)	401, 492, 2074, 2262
PspFI	CCCAGC	1 cut(s)	2297
PspGI	CCWGG	4 cut(s)	401, 492, 2074, 2262
PspN4I	GGNNCC	5 cut(s)	52, 143, 802, 841, 891
PspPI	GGNCC	4 cut(s)	249, 318, 890, 1093
PspPPI	RGGWCCY	1 cut(s)	890
PspXI	VCTCGAGB	1 cut(s)	1824
PstNI	CAGNNNCTG	1 cut(s)	443
RsaI	GTAC	8 cut(s)	40, 52, 509, 872, 1209, 1227, 1293, 1961
RsaNI	GTAC	8 cut(s)	39, 51, 508, 871, 1208, 1226, 1292, 1960
RseI	CAYNNNNRTG	4 cut(s)	257, 1152, 1390, 1856
SalI	GTCGAC	1 cut(s)	773
SaqAI	TTAA	9 cut(s)	78, 351, 1041, 1461, 1539, 1583, 1613, 1659, 2046
Sau3AI	GATC	5 cut(s)	194, 475, 753, 1761, 1909
Sau96I	GGNCC	4 cut(s)	249, 318, 890, 1093
SchI	GAGTC	7 cut(s)	272, 335, 733, 770, 1736, 1816, 1993
ScrFI	CCNGG	7 cut(s)	55, 403, 494, 1907, 1933, 2076, 2264
SduI	GDGCHC	4 cut(s)	718, 949, 1337, 1532
SfaNI	GCATC	4 cut(s)	634, 663, 1351, 1618
Sfr274I	CTCGAG	1 cut(s)	1824
SinI	GGWCC	3 cut(s)	249, 318, 890
SlaI	CTCGAG	1 cut(s)	1824
SmiMI	CAYNNNNRTG	4 cut(s)	257, 1152, 1390, 1856
SmlI	CTYRAG	3 cut(s)	119, 356, 1824
SmoI	CTYRAG	3 cut(s)	119, 356, 1824
SpeI	ACTAGT	1 cut(s)	1486
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	6 cut(s)	743, 1286, 1487, 1671, 2070, 2145
StyD4I	CCNGG	7 cut(s)	53, 401, 492, 1905, 1931, 2074, 2262
StyI	CCWWGG	3 cut(s)	609, 655, 893
TaaI	ACNGT	6 cut(s)	830, 858, 875, 1007, 1205, 1602
TaiI	ACGT	5 cut(s)	1019, 1030, 1414, 2118, 2198
TaqI	TCGA	6 cut(s)	712, 774, 949, 1152, 1825, 2198
TatI	WGTACW	4 cut(s)	507, 1225, 1291, 1959
TauI	GCSGC	6 cut(s)	24, 27, 281, 401, 1425, 1557
TfiI	GAWTC	7 cut(s)	446, 982, 1220, 1318, 1808, 1884, 2005
Tru1I	TTAA	9 cut(s)	78, 351, 1041, 1461, 1539, 1583, 1613, 1659, 2046
Tru9I	TTAA	9 cut(s)	78, 351, 1041, 1461, 1539, 1583, 1613, 1659, 2046
TscAI	CASTG	2 cut(s)	835, 2017
TseFI	GTSAC	3 cut(s)	338, 424, 929
TseI	GCWGC	9 cut(s)	102, 105, 592, 684, 1419, 1520, 1557, 2018, 2213
Tsp45I	GTSAC	3 cut(s)	338, 424, 929
TspDTI	ATGAA	7 cut(s)	321, 534, 630, 1080, 1431, 1668, 2138
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	835, 2017
Van91I	CCANNNNNTGG	1 cut(s)	735
VneI	GTGCAC	2 cut(s)	1333, 1528
VpaK11BI	GGWCC	3 cut(s)	249, 318, 890
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	4 cut(s)	529, 1642, 2270, 2312
XbaI	TCTAGA	2 cut(s)	742, 1670
XceI	RCATGY	2 cut(s)	514, 1979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	833
XhoI	CTCGAG	1 cut(s)	1824
XmiI	GTMKAC	2 cut(s)	774, 1717
XspI	CTAG	6 cut(s)	743, 1286, 1487, 1671, 2070, 2145
Zsp2I	ATGCAT	1 cut(s)	1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.