Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Forward (+)

25262067 .. 25265016

Gene Structure 2950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG154000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGCTGAGAGCAGCCCTTCTGCGGCACGTGCGAGTTCCACTACAAACCCTAAACCCAGCGGTAACCCTAACCGGACCCAAATGGGGCCCACCTCCTCTCCGGTGGATGTCTTCGCACGACGATCATCTCACCAAAAACGAGGTCACCGATAGAGTCCTCTCCGTCGTCAAGTGCTTCCCCAAAGTCGATCCTTCTACGGTGACTCCTGATGTACATTTCCAAAAAGATTTGGGCTTAGATAGCTTGGATAATGTGGAGATTGTAATGGCTCTAGAAGAAGAGTTCAAGCTTGAGATTCCTGACAAGGAAGCTGATAAGATTGATTCTACAAATCTGGCCATTGAGTACATCTATAACCATCCAATGGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

125

Amino Acids

14.08

Weight (kDa)

5.24

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	52 - 108	3.1e-09	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	367
AciI	CCGC	2 cut(s)	25, 62
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	339
AcvI	CACGTG	1 cut(s)	31
AfaI	GTAC	2 cut(s)	216, 350
AfiI	CCNNNNNNNGG	3 cut(s)	24, 86, 367
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	3 cut(s)	246, 292, 314
AluI	AGCT	3 cut(s)	246, 292, 314
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	88, 339
ApaI	GGGCCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	77, 88, 89
AsuHPI	GGTGA	3 cut(s)	124, 139, 214
AvaII	GGWCC	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	92
BbrPI	CACGTG	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	15, 26
BlsI	GCNGC	2 cut(s)	16, 27
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	3 cut(s)	77, 88, 89
BmiI	GGNNCC	3 cut(s)	79, 89, 90
BpiI	GAAGAC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	31
BsaWI	WCCGGW	2 cut(s)	74, 102
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 190, 220
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 86, 367
BseGI	GGATG	2 cut(s)	114, 361
BseLI	CCNNNNNNNGG	3 cut(s)	24, 86, 367
BseRI	GAGGAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	90, 341
BsiSI	CCGG	2 cut(s)	75, 103
BslI	CCNNNNNNNGG	3 cut(s)	24, 86, 367
BsnI	GGCC	2 cut(s)	90, 341
Bsp120I	GGGCCC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	124, 190
BspACI	CCGC	2 cut(s)	25, 62
BspANI	GGCC	2 cut(s)	90, 341
BspLI	GGNNCC	3 cut(s)	79, 89, 90
BspPI	GGATC	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	214
BssMI	GATC	2 cut(s)	124, 190
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	8, 238
BstEII	GGTNACC	2 cut(s)	64, 145
BstF5I	GGATG	2 cut(s)	114, 361
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	127, 193
BstMBI	GATC	2 cut(s)	124, 190
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 31, 243
BstPI	GGTNACC	2 cut(s)	64, 145
BstSLI	GKGCMC	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	90, 341
BtsCI	GGATG	2 cut(s)	114, 361
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	77, 88, 89
Csp6I	GTAC	2 cut(s)	215, 349
CviJI	RGCY	9 cut(s)	17, 90, 237, 246, 272, 292, 314, 341, 371
CviKI_1	RGCY	9 cut(s)	17, 90, 237, 246, 272, 292, 314, 341, 371
CviQI	GTAC	2 cut(s)	215, 349
DdeI	CTNAG	2 cut(s)	8, 238
DpnI	GATC	2 cut(s)	126, 192
DpnII	GATC	2 cut(s)	124, 190
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	31
Eco91I	GGTNACC	2 cut(s)	64, 145
EcoO109I	RGGNCCY	1 cut(s)	88
EcoO65I	GGTNACC	2 cut(s)	64, 145
EcoT38I	GRGCYC	1 cut(s)	92
FaiI	YATR	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	15, 26
FokI	GGATG	2 cut(s)	121, 348
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	15, 26
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	15, 26
GsaI	CCCAGC	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	90, 341
HapII	CCGG	2 cut(s)	75, 103
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	4 cut(s)	156, 205, 298, 326
HpaII	CCGG	2 cut(s)	75, 103
HphI	GGTGA	3 cut(s)	124, 139, 214
Hpy188III	TCNNGA	3 cut(s)	209, 275, 302
Hpy99I	CGWCG	2 cut(s)	125, 170
HpyAV	CCTTC	2 cut(s)	29, 204
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 31, 243
HpyF3I	CTNAG	2 cut(s)	8, 238
HpySE526I	ACGT	1 cut(s)	30
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	124, 190
LpnPI	CCDG	6 cut(s)	72, 88, 116, 222, 315, 323
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	64, 145, 202
MalI	GATC	2 cut(s)	126, 192
MboI	GATC	2 cut(s)	124, 190
MboII	GAAGA	3 cut(s)	105, 290, 293
MhlI	GDGCHC	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	341
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	165, 199
MnlI	CCTC	4 cut(s)	105, 108, 136, 170
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	2 cut(s)	75, 103
MwoI	GCNNNNNNNGC	3 cut(s)	11, 31, 243
NdeII	GATC	2 cut(s)	124, 190
NlaIV	GGNNCC	3 cut(s)	79, 89, 90
NmuCI	GTSAC	2 cut(s)	145, 202
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	298, 326
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	16, 27
PleI	GAGTC	2 cut(s)	164, 199
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
PpsI	GAGTC	2 cut(s)	164, 199
Ppu21I	YACGTR	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	31
PspEI	GGTNACC	2 cut(s)	64, 145
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	79, 89, 90
PspOMI	GGGCCC	1 cut(s)	88
PspPI	GGNCC	3 cut(s)	77, 88, 89
RsaI	GTAC	2 cut(s)	216, 350
RsaNI	GTAC	2 cut(s)	215, 349
SatI	GCNGC	2 cut(s)	15, 26
Sau3AI	GATC	2 cut(s)	124, 190
Sau96I	GGNCC	3 cut(s)	77, 88, 89
SchI	GAGTC	2 cut(s)	165, 199
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	6 cut(s)	33, 97, 147, 248, 294, 316
SinI	GGWCC	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SsiI	CCGC	2 cut(s)	25, 62
SspMI	CTAG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	189
TatI	WGTACW	2 cut(s)	214, 348
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	298, 326
TseFI	GTSAC	2 cut(s)	145, 202
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	145, 202
TspGWI	ACGGA	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	77
XbaI	TCTAGA	1 cut(s)	274
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.