Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033183.1

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 153

Gene Structure 153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033183.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

aaagatttgggcttagatagcttggataatgtggagattgtaatggctctagaagaagagttcaagcttgagattcctgacaaggaagctgataagattgattctacaaatctggccattgagtacatctctaaccatccaatggcttcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

50

Amino Acids

5.61

Weight (kDa)

4.08

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	114
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	3 cut(s)	21, 67, 89
AluI	AGCT	3 cut(s)	21, 67, 89
AoxI	GGCC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	116
BccI	CCATC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	50
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpuEI	CTTGAG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	142
BsnI	GGCC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	124
CviJI	RGCY	7 cut(s)	12, 21, 47, 67, 89, 116, 146
CviKI_1	RGCY	7 cut(s)	12, 21, 47, 67, 89, 116, 146
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
FokI	GGATG	1 cut(s)	123
FspBI	CTAG	1 cut(s)	50
FspEI	CC	9 cut(s)	8, 17, 29, 68, 90, 98, 128, 130, 149
HaeIII	GGCC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	2 cut(s)	73, 101
Hpy188III	TCNNGA	2 cut(s)	50, 77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	13
LpnPI	CCDG	2 cut(s)	90, 98
MaeI	CTAG	1 cut(s)	50
MboII	GAAGA	2 cut(s)	65, 68
MlsI	TGGCCA	1 cut(s)	116
MluNI	TGGCCA	1 cut(s)	116
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	73, 101
PflMI	CCANNNNNTGG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SetI	ASST	3 cut(s)	23, 69, 91
SgeI	CNNG	7 cut(s)	34, 62, 76, 80, 89, 94, 125
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SspMI	CTAG	1 cut(s)	50
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	73, 101
Van91I	CCANNNNNTGG	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	49
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.