Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Reverse (-)

32019871 .. 32022296

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCGCTGAGAGCAGCCGTTCTGCGGCACGTGCGAGTTCCACTACAAACCCTAAACGGCCCAGCGGTAACCCTAACCGGACCCAAATGGGGCCCACCTTCTCTCCGGTGGATGTCTTCGCACGACGATCATCTCACCAAAAACGAGGTCACCGATAGAGTCCTCTCCGTCGTCAAGTGCTTCCCCAAAGTCGATCCTTCTACGATAGATGAGGTGACTCCTGATGTACATTTCCAAAAAGATTTGGGCTTAGATAGCTTGGATAATGTGGAGATTGTAATGGCTCTAGAAGAAGAGTTCAAGCTTGAGATTCCTGACAAGGAAGCTGATAAGATTGATTCTACAAATCTGGCCATTGAGTACATCTATAACCATCCAATGGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

129

Amino Acids

14.47

Weight (kDa)

4.96

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	68 - 112	1.4e-08	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	379
AciI	CCGC	2 cut(s)	25, 65
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	351
AcvI	CACGTG	1 cut(s)	31
AfaI	GTAC	2 cut(s)	228, 362
AfiI	CCNNNNNNNGG	3 cut(s)	24, 89, 379
AgsI	TTSAA	1 cut(s)	301
AluBI	AGCT	3 cut(s)	258, 304, 326
AluI	AGCT	3 cut(s)	258, 304, 326
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	3 cut(s)	58, 91, 351
ApaI	GGGCCC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	4 cut(s)	59, 80, 91, 92
AsuHPI	GGTGA	3 cut(s)	127, 142, 226
AvaII	GGWCC	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	95
BbrPI	CACGTG	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	381
BceAI	ACGGC	2 cut(s)	2, 73
BfaI	CTAG	1 cut(s)	287
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	15, 26
BlsI	GCNGC	2 cut(s)	16, 27
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	4 cut(s)	59, 80, 91, 92
BmiI	GGNNCC	3 cut(s)	82, 92, 93
BpiI	GAAGAC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	31
BsaWI	WCCGGW	2 cut(s)	77, 105
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 89, 379
BseGI	GGATG	2 cut(s)	117, 373
BseLI	CCNNNNNNNGG	3 cut(s)	24, 89, 379
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	61
BshFI	GGCC	3 cut(s)	60, 93, 353
BsiSI	CCGG	2 cut(s)	78, 106
BslI	CCNNNNNNNGG	3 cut(s)	24, 89, 379
BsnI	GGCC	3 cut(s)	60, 93, 353
Bsp120I	GGGCCC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	127, 193
BspACI	CCGC	2 cut(s)	25, 65
BspANI	GGCC	3 cut(s)	60, 93, 353
BspLI	GGNNCC	3 cut(s)	82, 92, 93
BspPI	GGATC	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	226
BssMI	GATC	2 cut(s)	127, 193
Bst6I	CTCTTC	1 cut(s)	288
BstAUI	TGTACA	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	8, 250
BstEII	GGTNACC	2 cut(s)	67, 148
BstF5I	GGATG	2 cut(s)	117, 373
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	130, 196
BstMBI	GATC	2 cut(s)	127, 193
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 31, 255
BstPI	GGTNACC	2 cut(s)	67, 148
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	60, 93, 353
BtsCI	GGATG	2 cut(s)	117, 373
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	4 cut(s)	59, 80, 91, 92
Csp6I	GTAC	2 cut(s)	227, 361
CviQI	GTAC	2 cut(s)	227, 361
DdeI	CTNAG	2 cut(s)	8, 250
DpnI	GATC	2 cut(s)	129, 195
DpnII	GATC	2 cut(s)	127, 193
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	80
Eco72I	CACGTG	1 cut(s)	31
Eco91I	GGTNACC	2 cut(s)	67, 148
EcoO109I	RGGNCCY	1 cut(s)	91
EcoO65I	GGTNACC	2 cut(s)	67, 148
EcoT38I	GRGCYC	1 cut(s)	95
FaiI	YATR	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	15, 26
FokI	GGATG	2 cut(s)	124, 360
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	15, 26
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	15, 26
GsaI	CCCAGC	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	60, 93, 353
HapII	CCGG	2 cut(s)	78, 106
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	4 cut(s)	159, 217, 310, 338
HpaII	CCGG	2 cut(s)	78, 106
HphI	GGTGA	3 cut(s)	127, 142, 226
Hpy188III	TCNNGA	3 cut(s)	221, 287, 314
Hpy99I	CGWCG	2 cut(s)	128, 173
HpyAV	CCTTC	2 cut(s)	108, 207
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 31, 255
HpyF3I	CTNAG	2 cut(s)	8, 250
HpySE526I	ACGT	1 cut(s)	30
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	127, 193
LpnPI	CCDG	6 cut(s)	75, 91, 119, 234, 327, 335
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	67, 148, 214
MalI	GATC	2 cut(s)	129, 195
MboI	GATC	2 cut(s)	127, 193
MboII	GAAGA	3 cut(s)	108, 302, 305
MhlI	GDGCHC	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	353
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	2 cut(s)	168, 211
MnlI	CCTC	3 cut(s)	139, 173, 205
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	78, 106
MwoI	GCNNNNNNNGC	3 cut(s)	11, 31, 255
NdeII	GATC	2 cut(s)	127, 193
NlaIV	GGNNCC	3 cut(s)	82, 92, 93
NmuCI	GTSAC	2 cut(s)	148, 214
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	310, 338
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	16, 27
PleI	GAGTC	2 cut(s)	167, 211
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
PpsI	GAGTC	2 cut(s)	167, 211
Ppu21I	YACGTR	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	31
PspEI	GGTNACC	2 cut(s)	67, 148
PspFI	CCCAGC	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	82, 92, 93
PspOMI	GGGCCC	1 cut(s)	91
PspPI	GGNCC	4 cut(s)	59, 80, 91, 92
RsaI	GTAC	2 cut(s)	228, 362
RsaNI	GTAC	2 cut(s)	227, 361
SatI	GCNGC	2 cut(s)	15, 26
Sau3AI	GATC	2 cut(s)	127, 193
Sau96I	GGNCC	4 cut(s)	59, 80, 91, 92
SchI	GAGTC	2 cut(s)	168, 211
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	7 cut(s)	33, 100, 150, 216, 260, 306, 328
SinI	GGWCC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SsiI	CCGC	2 cut(s)	25, 65
SspMI	CTAG	1 cut(s)	287
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	192
TatI	WGTACW	2 cut(s)	226, 360
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	310, 338
TseFI	GTSAC	2 cut(s)	148, 214
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	148, 214
TspGWI	ACGGA	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	80
XbaI	TCTAGA	1 cut(s)	286
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.