Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Reverse (-)

23305221 .. 23307694

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0171200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGTTCGAAATGGGGTGCTAAATTACAGTCATGCTTGGAGATCATGGAGAAAATTGATGAGTTTCGGCGTTCAGAAATGACCGAGGAAGAGTTGATATTGAAGTTCCATGAAGAATCATTTGAATGGCATTTGAAGAGGTTAGGTATTTTGTGCCCAGAACTGATGGTGATTCGTTCCATTGATGATGAGAAAGTAGTAGAATTTAATCCCGACAACAATTATTCAGTTAATCATCTGGAACTGAGCCTTACAAATGATGATGTTCGATCATCAATGAATGAAACGCAACTGCAGACAATTATGGACATCCGTGCTTGGATTCATAATAGTTGTCGTCTTGAAATGGGGATGGATGAACTCTCAAGAGAGATAGTTCTTGACACTGAAATATTTGCTGATGAGAAAGCGGATTTTCTGAAGCAAATAAGTGAAATATTGGTGCTATGTCCTAAATGGATAGAGGAGAAACATTTGGACAACAACCGGGTCTTCAGGTTTGATGAAAATAATTTTTCAGAGGAACAAGGTCTACTTAAGAATGCAATAGCAGGAAAACTGGCAGAGATGCAAAACACAACCTCGCGCGCTATAATTGGTACCACGATTCGAAAAGTGCAGAACAAAATAGTGGAACTTTCATCTGACGAGAGAAAGGGGCCACTTCCAGTTGAAGAACTTATTAAGCTGTGCCTTGAAGGTAAAAGCGCCGAGCTGTTGCTGCTGGCCTTTGACTTGTTTGTATGGAGTAGCTCCTCCATCCGTAGGACTCATGCACACTCGTTACACATTTGTTGGAAAGAGTCCATTGATCAGGATGATTGGATTAAACTCTATCAAGCATCTATATCAGAAATGTGGAATGATGAGGAAACCTTGCAGAGTCTGAAAGACACAGTACTTTTCAAGGCTTCCAAAAAATGCTATGGACCCAAGCAAGAACTTCCTGACGGTTTGATAGAAGAATTTTCCGAAGTGCTGCAACTGAGGAAACCTGTGAATTCTGATTCGGTTTCTTCTGTAGAAGCAATACTAGAGCAGCACAAGGACCATCCAAAGGCAGGTATGCTGATGCTGAAGGCAATCATTTTGGGCAGTTCATATGATGGTGAGAAAGAAGGTCCTACAGCTATGGAGTGGAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

382

Amino Acids

44.06

Weight (kDa)

4.91

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1052
Acc65I	GGTACC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	532
AccII	CGCG	2 cut(s)	586, 588
AciI	CCGC	1 cut(s)	410
AcsI	RAATTY	3 cut(s)	203, 965, 1000
AcuI	CTGAAG	3 cut(s)	440, 478, 1097
AfaI	GTAC	2 cut(s)	601, 900
AfiI	CCNNNNNNNGG	3 cut(s)	765, 1057, 1061
AflII	CTTAAG	1 cut(s)	536
AgsI	TTSAA	7 cut(s)	103, 125, 136, 344, 674, 698, 907
AluBI	AGCT	4 cut(s)	688, 715, 753, 1130
AluI	AGCT	4 cut(s)	688, 715, 753, 1130
AlwNI	CAGNNNCTG	1 cut(s)	886
AoxI	GGCC	2 cut(s)	659, 726
ApeKI	GCWGC	3 cut(s)	721, 979, 1039
ApoI	RAATTY	3 cut(s)	203, 965, 1000
Asp718I	GGTACC	1 cut(s)	599
AspLEI	GCGC	3 cut(s)	588, 590, 710
AspS9I	GGNCC	4 cut(s)	659, 929, 1048, 1121
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	181, 1121
AsuII	TTCGAA	2 cut(s)	8, 610
AvaII	GGWCC	3 cut(s)	929, 1048, 1121
BaeGI	GKGCMC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	484
BbvI	GCAGC	3 cut(s)	708, 966, 1051
BccI	CCATC	5 cut(s)	160, 346, 767, 1059, 1100
BclI	TGATCA	1 cut(s)	811
BcnI	CCSGG	1 cut(s)	488
BfaI	CTAG	1 cut(s)	1034
BfmI	CTRYAG	3 cut(s)	293, 1020, 1125
BfoI	RGCGCY	1 cut(s)	711
BfrI	CTTAAG	1 cut(s)	536
BfuAI	ACCTGC	1 cut(s)	1052
BisI	GCNGC	3 cut(s)	722, 980, 1040
BlsI	GCNGC	3 cut(s)	723, 981, 1041
BmcAI	AGTACT	1 cut(s)	900
Bme1390I	CCNGG	1 cut(s)	488
Bme18I	GGWCC	3 cut(s)	929, 1048, 1121
BmgT120I	GGNCC	4 cut(s)	659, 929, 1048, 1121
BmiI	GGNNCC	3 cut(s)	601, 660, 931
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	3 cut(s)	558, 851, 1062
BpiI	GAAGAC	1 cut(s)	484
Bpu14I	TTCGAA	2 cut(s)	8, 610
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	488
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	3 cut(s)	765, 1057, 1061
Bse1I	ACTGG	2 cut(s)	564, 668
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	6 cut(s)	309, 357, 361, 759, 823, 1051
BseLI	CCNNNNNNNGG	3 cut(s)	765, 1057, 1061
BseMII	CTCAG	2 cut(s)	236, 977
BseNI	ACTGG	2 cut(s)	564, 668
BsePI	GCGCGC	1 cut(s)	586
BseRI	GAGGAG	2 cut(s)	479, 745
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	3 cut(s)	708, 966, 1051
BsgI	GTGCAG	1 cut(s)	638
Bsh1236I	CGCG	2 cut(s)	586, 588
BshFI	GGCC	2 cut(s)	661, 728
BshNI	GGYRCC	1 cut(s)	599
BsiSI	CCGG	1 cut(s)	487
BslI	CCNNNNNNNGG	3 cut(s)	765, 1057, 1061
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	2 cut(s)	661, 728
Bsp119I	TTCGAA	2 cut(s)	8, 610
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	42, 269, 811
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	2 cut(s)	661, 728
BspCNI	CTCAG	2 cut(s)	237, 978
BspFNI	CGCG	2 cut(s)	586, 588
BspLI	GGNNCC	3 cut(s)	601, 660, 931
BspMAI	CTGCAG	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	1052
BspT104I	TTCGAA	2 cut(s)	8, 610
BspT107I	GGYRCC	1 cut(s)	599
BspTI	CTTAAG	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	564, 668
BssECI	CCNNGG	1 cut(s)	84
BssHII	GCGCGC	1 cut(s)	586
BssMI	GATC	3 cut(s)	42, 269, 811
Bst4CI	ACNGT	3 cut(s)	30, 898, 953
Bst6I	CTCTTC	2 cut(s)	84, 131
BstAFI	CTTAAG	1 cut(s)	536
BstBI	TTCGAA	2 cut(s)	8, 610
BstC8I	GCNNGC	2 cut(s)	588, 726
BstDEI	CTNAG	2 cut(s)	245, 986
BstF5I	GGATG	6 cut(s)	309, 357, 361, 759, 823, 1051
BstFNI	CGCG	2 cut(s)	586, 588
BstH2I	RGCGCY	1 cut(s)	711
BstHHI	GCGC	3 cut(s)	588, 590, 710
BstKTI	GATC	3 cut(s)	45, 272, 814
BstMBI	GATC	3 cut(s)	42, 269, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	721
BstSCI	CCNGG	1 cut(s)	486
BstSFI	CTRYAG	3 cut(s)	293, 1020, 1125
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	2 cut(s)	586, 588
BstV1I	GCAGC	3 cut(s)	708, 966, 1051
BstV2I	GAAGAC	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	661, 728
BtsCI	GGATG	6 cut(s)	309, 357, 361, 759, 823, 1051
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	1052
Cac8I	GCNNGC	2 cut(s)	588, 726
CaiI	CAGNNNCTG	1 cut(s)	886
CfoI	GCGC	3 cut(s)	588, 590, 710
Cfr13I	GGNCC	4 cut(s)	659, 929, 1048, 1121
Csp6I	GTAC	2 cut(s)	600, 899
CviAII	CATG	4 cut(s)	33, 46, 110, 773
CviJI	RGCY	8 cut(s)	249, 661, 688, 715, 728, 753, 911, 1130
CviKI_1	RGCY	8 cut(s)	249, 661, 688, 715, 728, 753, 911, 1130
CviQI	GTAC	2 cut(s)	600, 899
DdeI	CTNAG	2 cut(s)	245, 986
DpnI	GATC	3 cut(s)	44, 271, 813
DpnII	GATC	3 cut(s)	42, 269, 811
Eam1104I	CTCTTC	2 cut(s)	84, 131
EarI	CTCTTC	2 cut(s)	84, 131
Eco47I	GGWCC	3 cut(s)	929, 1048, 1121
Eco57I	CTGAAG	3 cut(s)	440, 478, 1097
EcoO109I	RGGNCCY	1 cut(s)	1121
EcoRI	GAATTC	1 cut(s)	1000
FaeI	CATG	4 cut(s)	36, 49, 113, 776
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FatI	CATG	4 cut(s)	32, 45, 109, 772
FauNDI	CATATG	1 cut(s)	1102
FbaI	TGATCA	1 cut(s)	811
FblI	GTMKAC	1 cut(s)	532
Fnu4HI	GCNGC	3 cut(s)	722, 980, 1040
FokI	GGATG	6 cut(s)	296, 364, 368, 746, 830, 1038
Fsp4HI	GCNGC	3 cut(s)	722, 980, 1040
FspBI	CTAG	1 cut(s)	1034
GlaI	GCGC	3 cut(s)	587, 589, 709
GluI	GCNGC	3 cut(s)	722, 980, 1040
HaeII	RGCGCY	1 cut(s)	711
HaeIII	GGCC	2 cut(s)	661, 728
HapII	CCGG	1 cut(s)	487
HhaI	GCGC	3 cut(s)	588, 590, 710
Hin1II	CATG	4 cut(s)	36, 49, 113, 776
Hin6I	GCGC	3 cut(s)	586, 588, 708
HinP1I	GCGC	3 cut(s)	586, 588, 708
HinfI	GANTC	8 cut(s)	116, 172, 322, 607, 769, 803, 883, 1007
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	2 cut(s)	181, 1121
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	8 cut(s)	76, 420, 520, 646, 853, 888, 973, 1006
Hpy188III	TCNNGA	7 cut(s)	212, 239, 341, 366, 380, 815, 947
Hpy8I	GTNNAC	1 cut(s)	533
HpyAV	CCTTC	3 cut(s)	692, 1072, 1112
HpyCH4III	ACNGT	3 cut(s)	30, 898, 953
HpyCH4V	TGCA	7 cut(s)	295, 545, 571, 619, 776, 880, 982
HpyF10VI	GCNNNNNNNGC	1 cut(s)	721
HpyF3I	CTNAG	2 cut(s)	245, 986
Hsp92II	CATG	4 cut(s)	36, 49, 113, 776
HspAI	GCGC	3 cut(s)	586, 588, 708
KpnI	GGTACC	1 cut(s)	603
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	3 cut(s)	42, 269, 811
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	3 cut(s)	708, 966, 1051
LweI	GCATC	3 cut(s)	558, 851, 1062
MaeI	CTAG	1 cut(s)	1034
MaeIII	GTNAC	1 cut(s)	783
MalI	GATC	3 cut(s)	44, 271, 813
MboI	GATC	3 cut(s)	42, 269, 811
MboII	GAAGA	7 cut(s)	101, 125, 148, 484, 686, 974, 1008
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	9 cut(s)	23, 54, 203, 220, 300, 511, 594, 965, 1000
MlyI	GAGTC	3 cut(s)	763, 812, 892
MmeI	TCCRAC	1 cut(s)	776
MnlI	CCTC	8 cut(s)	79, 132, 457, 514, 592, 766, 862, 981
MseI	TTAA	5 cut(s)	207, 231, 537, 684, 828
MslI	CAYNNNNRTG	1 cut(s)	124
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	1 cut(s)	487
MspR9I	CCNGG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	547
MvnI	CGCG	2 cut(s)	586, 588
MwoI	GCNNNNNNNGC	1 cut(s)	721
NciI	CCSGG	1 cut(s)	488
NdeI	CATATG	1 cut(s)	1102
NdeII	GATC	3 cut(s)	42, 269, 811
NlaIII	CATG	4 cut(s)	36, 49, 113, 776
NlaIV	GGNNCC	3 cut(s)	601, 660, 931
NmeAIII	GCCGAG	1 cut(s)	736
NspV	TTCGAA	2 cut(s)	8, 610
PauI	GCGCGC	1 cut(s)	586
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	5 cut(s)	116, 172, 322, 607, 1007
PkrI	GCNGC	3 cut(s)	723, 981, 1041
PleI	GAGTC	3 cut(s)	763, 811, 891
PpsI	GAGTC	3 cut(s)	763, 811, 891
PpuMI	RGGWCCY	1 cut(s)	1121
Psp5II	RGGWCCY	1 cut(s)	1121
PspN4I	GGNNCC	3 cut(s)	601, 660, 931
PspPI	GGNCC	4 cut(s)	659, 929, 1048, 1121
PspPPI	RGGWCCY	1 cut(s)	1121
PsrI	GAACNNNNNNTAC	2 cut(s)	516, 548
PstI	CTGCAG	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	886
PteI	GCGCGC	1 cut(s)	586
RsaI	GTAC	2 cut(s)	601, 900
RsaNI	GTAC	2 cut(s)	600, 899
RseI	CAYNNNNRTG	1 cut(s)	124
SaqAI	TTAA	5 cut(s)	207, 231, 537, 684, 828
SatI	GCNGC	3 cut(s)	722, 980, 1040
Sau3AI	GATC	3 cut(s)	42, 269, 811
Sau96I	GGNCC	4 cut(s)	659, 929, 1048, 1121
ScaI	AGTACT	1 cut(s)	900
SchI	GAGTC	3 cut(s)	763, 812, 892
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	3 cut(s)	558, 851, 1062
SfcI	CTRYAG	3 cut(s)	293, 1020, 1125
SfuI	TTCGAA	2 cut(s)	8, 610
SinI	GGWCC	3 cut(s)	929, 1048, 1121
SmiMI	CAYNNNNRTG	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	364, 536
SmoI	CTYRAG	2 cut(s)	364, 536
Sse9I	AATT	9 cut(s)	23, 54, 203, 220, 300, 511, 594, 965, 1000
SsiI	CCGC	1 cut(s)	410
SspI	AATATT	2 cut(s)	393, 438
SspMI	CTAG	1 cut(s)	1034
StyD4I	CCNGG	1 cut(s)	486
TaaI	ACNGT	3 cut(s)	30, 898, 953
TaqI	TCGA	3 cut(s)	8, 268, 610
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	9 cut(s)	23, 54, 203, 220, 300, 511, 594, 965, 1000
TatI	WGTACW	1 cut(s)	898
TfiI	GAWTC	5 cut(s)	116, 172, 322, 607, 1007
Tru1I	TTAA	5 cut(s)	207, 231, 537, 684, 828
Tru9I	TTAA	5 cut(s)	207, 231, 537, 684, 828
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	3 cut(s)	721, 979, 1039
TspDTI	ATGAA	8 cut(s)	126, 293, 297, 314, 372, 519, 630, 1089
TspGWI	ACGGA	2 cut(s)	302, 752
TspRI	CASTG	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	3 cut(s)	929, 1048, 1121
XapI	RAATTY	3 cut(s)	203, 965, 1000
XmiI	GTMKAC	1 cut(s)	532
XspI	CTAG	1 cut(s)	1034
ZrmI	AGTACT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.