Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Forward (+)

38295935 .. 38298138

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGCCAAACACGTGACTGTAAAGCTTTTAGTTCAGCACCCCTATTTTCACCAGCAGCAAACCAAAGACCGAGAGAGAGAGAGAGCAAAGCTTGGCACAAGAGAAGAAGCAGCAGCAGTAGAGAGAGTGAGATGGCGGTGAGAGCAGCTCTTCTGCGGCACGTGCGAGTTCCACTACAAACCCTAAACCCAGCCGTAACCCTAACCGGACCCAAATGGGGCCCACCTTCTCTCCGGTGGATGTCTTCGCACGACGATCATCTCACCAAAAACGAGGTCACCGATAGAGTCCTCTCCGTCGTCAAGTGCTTCCCCAAAGTCGATCCTTCTACGGTGACTCCTGATGTACATTTCCAAAAAGATTTGGGCTTAGATAGCTTGGATAATGTGGAGATTGTAATGGCTCTAGAAGAAGAGTTCAAGCTTGAGATTCCTGACAAGGAAGCTGATAAGATTGATTCTACAAATCTGGCCATTGAGTACATCTCTAACCATCCAATGGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

169

Amino Acids

19.06

Weight (kDa)

6.59

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	96 - 151	6.1e-09	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	499
AciI	CCGC	2 cut(s)	137, 157
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	471
AcvI	CACGTG	2 cut(s)	14, 163
AfaI	GTAC	2 cut(s)	348, 482
AfiI	CCNNNNNNNGG	2 cut(s)	218, 499
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	421
AluBI	AGCT	6 cut(s)	26, 92, 149, 378, 424, 446
AluI	AGCT	6 cut(s)	26, 92, 149, 378, 424, 446
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	220, 471
ApaI	GGGCCC	1 cut(s)	224
ApeKI	GCWGC	4 cut(s)	56, 111, 114, 146
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AspS9I	GGNCC	3 cut(s)	209, 220, 221
AsuHPI	GGTGA	5 cut(s)	42, 151, 256, 271, 346
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	224
BbrPI	CACGTG	2 cut(s)	14, 163
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	68, 123, 126, 158
BccI	CCATC	2 cut(s)	127, 501
BceAI	ACGGC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	407
BisI	GCNGC	5 cut(s)	57, 112, 115, 147, 158
BlsI	GCNGC	5 cut(s)	58, 113, 116, 148, 159
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	3 cut(s)	209, 220, 221
BmiI	GGNNCC	3 cut(s)	211, 221, 222
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	4 cut(s)	133, 165, 470, 502
BpuEI	CTTGAG	1 cut(s)	446
BsaAI	YACGTR	2 cut(s)	14, 163
BsaWI	WCCGGW	2 cut(s)	206, 234
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 322, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 499
BseGI	GGATG	2 cut(s)	246, 493
BseLI	CCNNNNNNNGG	2 cut(s)	218, 499
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	4 cut(s)	68, 123, 126, 158
BseYI	CCCAGC	1 cut(s)	190
BshFI	GGCC	2 cut(s)	222, 473
BsiSI	CCGG	2 cut(s)	207, 235
BslI	CCNNNNNNNGG	2 cut(s)	218, 499
BsnI	GGCC	2 cut(s)	222, 473
Bsp120I	GGGCCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	256, 322
BspACI	CCGC	2 cut(s)	137, 157
BspANI	GGCC	2 cut(s)	222, 473
BspLI	GGNNCC	3 cut(s)	211, 221, 222
BspPI	GGATC	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	346
BssMI	GATC	2 cut(s)	256, 322
Bst4CI	ACNGT	2 cut(s)	20, 334
Bst6I	CTCTTC	2 cut(s)	156, 408
BstAUI	TGTACA	1 cut(s)	346
BstBAI	YACGTR	2 cut(s)	14, 163
BstDEI	CTNAG	1 cut(s)	370
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	246, 493
BstKTI	GATC	2 cut(s)	259, 325
BstMBI	GATC	2 cut(s)	256, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 163, 375
BstPI	GGTNACC	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	4 cut(s)	68, 123, 126, 158
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	222, 473
BtsCI	GGATG	2 cut(s)	246, 493
Cfr13I	GGNCC	3 cut(s)	209, 220, 221
Csp6I	GTAC	2 cut(s)	347, 481
CviQI	GTAC	2 cut(s)	347, 481
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	2 cut(s)	258, 324
DpnII	GATC	2 cut(s)	256, 322
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	2 cut(s)	156, 408
EarI	CTCTTC	2 cut(s)	156, 408
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	209
Eco72I	CACGTG	2 cut(s)	14, 163
Eco91I	GGTNACC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	224
Fnu4HI	GCNGC	5 cut(s)	57, 112, 115, 147, 158
FokI	GGATG	2 cut(s)	253, 480
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	5 cut(s)	57, 112, 115, 147, 158
FspBI	CTAG	1 cut(s)	407
GluI	GCNGC	5 cut(s)	57, 112, 115, 147, 158
GsaI	CCCAGC	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	222, 473
HapII	CCGG	2 cut(s)	207, 235
HindIII	AAGCTT	3 cut(s)	24, 90, 422
HinfI	GANTC	4 cut(s)	288, 337, 430, 458
HpaII	CCGG	2 cut(s)	207, 235
HphI	GGTGA	5 cut(s)	42, 151, 256, 271, 346
Hpy188III	TCNNGA	3 cut(s)	341, 407, 434
Hpy99I	CGWCG	2 cut(s)	257, 302
HpyAV	CCTTC	2 cut(s)	237, 336
HpyCH4III	ACNGT	2 cut(s)	20, 334
HpyCH4IV	ACGT	2 cut(s)	13, 162
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 163, 375
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	2 cut(s)	13, 162
Kzo9I	GATC	2 cut(s)	256, 322
LguI	GCTCTTC	1 cut(s)	156
LpnPI	CCDG	7 cut(s)	66, 204, 220, 248, 354, 447, 455
Lsp1109I	GCAGC	4 cut(s)	68, 123, 126, 158
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	2 cut(s)	13, 162
MaeIII	GTNAC	4 cut(s)	14, 196, 277, 334
MalI	GATC	2 cut(s)	258, 324
MboI	GATC	2 cut(s)	256, 322
MboII	GAAGA	5 cut(s)	117, 143, 237, 422, 425
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	473
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	2 cut(s)	297, 331
MnlI	CCTC	2 cut(s)	268, 302
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	473
MspI	CCGG	2 cut(s)	207, 235
MwoI	GCNNNNNNNGC	3 cut(s)	143, 163, 375
NdeII	GATC	2 cut(s)	256, 322
NlaIV	GGNNCC	3 cut(s)	211, 221, 222
NmuCI	GTSAC	3 cut(s)	14, 277, 334
PciSI	GCTCTTC	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	430, 458
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	5 cut(s)	58, 113, 116, 148, 159
PleI	GAGTC	2 cut(s)	296, 331
PmaCI	CACGTG	2 cut(s)	14, 163
PmlI	CACGTG	2 cut(s)	14, 163
PpsI	GAGTC	2 cut(s)	296, 331
Ppu21I	YACGTR	2 cut(s)	14, 163
PspCI	CACGTG	2 cut(s)	14, 163
PspEI	GGTNACC	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	190
PspN4I	GGNNCC	3 cut(s)	211, 221, 222
PspOMI	GGGCCC	1 cut(s)	220
PspPI	GGNCC	3 cut(s)	209, 220, 221
RsaI	GTAC	2 cut(s)	348, 482
RsaNI	GTAC	2 cut(s)	347, 481
SapI	GCTCTTC	1 cut(s)	156
SatI	GCNGC	5 cut(s)	57, 112, 115, 147, 158
Sau3AI	GATC	2 cut(s)	256, 322
Sau96I	GGNCC	3 cut(s)	209, 220, 221
SchI	GAGTC	2 cut(s)	297, 331
SduI	GDGCHC	1 cut(s)	224
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SsiI	CCGC	2 cut(s)	137, 157
SspMI	CTAG	1 cut(s)	407
TaaI	ACNGT	2 cut(s)	20, 334
TaiI	ACGT	2 cut(s)	16, 165
TaqI	TCGA	1 cut(s)	321
TaqII	GACCGA	1 cut(s)	85
TatI	WGTACW	2 cut(s)	346, 480
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	430, 458
TseFI	GTSAC	3 cut(s)	14, 277, 334
TseI	GCWGC	4 cut(s)	56, 111, 114, 146
Tsp45I	GTSAC	3 cut(s)	14, 277, 334
TspGWI	ACGGA	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	209
XbaI	TCTAGA	1 cut(s)	406
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.