Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Reverse (-)

64059524 .. 64059809

Gene Structure 286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGAAGGTGACTCCTGATGCACATTTCCAAAAAGATTTGGGCTTAGATAGCTTGGATAATGTGGAGATTGTAATGGCTCTAGAAGAAGAGTTCAAGCTTGAGATTCCTGACAAGGAAGCTGATAAGATTGATTCTACAAATCTGGATATTGAGTACATCTATAACCATCCAATGGCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

60

Amino Acids

6.98

Weight (kDa)

4.19

Isoelectric Point (pI)

20.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	3 - 40	2.8e-08	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	3 cut(s)	51, 97, 119
AluI	AGCT	3 cut(s)	51, 97, 119
AsuHPI	GGTGA	1 cut(s)	19
BccI	CCATC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	154
CviJI	RGCY	6 cut(s)	42, 51, 77, 97, 119, 176
CviKI_1	RGCY	6 cut(s)	42, 51, 77, 97, 119, 176
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
FaiI	YATR	1 cut(s)	162
FokI	GGATG	1 cut(s)	153
FspBI	CTAG	1 cut(s)	80
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	3 cut(s)	10, 103, 131
HphI	GGTGA	1 cut(s)	19
Hpy188III	TCNNGA	4 cut(s)	14, 80, 107, 143
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	27, 120, 128
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	7
MboII	GAAGA	2 cut(s)	95, 98
MlyI	GAGTC	1 cut(s)	4
MwoI	GCNNNNNNNGC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	103, 131
PflMI	CCANNNNNTGG	1 cut(s)	172
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	4
SetI	ASST	4 cut(s)	9, 53, 99, 121
SfaNI	GCATC	1 cut(s)	7
SgeI	CNNG	8 cut(s)	26, 64, 92, 106, 110, 119, 124, 155
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SspMI	CTAG	1 cut(s)	80
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	103, 131
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	172
XbaI	TCTAGA	1 cut(s)	79
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.