Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Reverse (-)

32026345 .. 32038343

Gene Structure 11999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGCATTTGGGCTCGATAGCTTGGATAATGTGGAGATTGTAATGGCTCTAGAAGAAGAGTTCAAACTTGAGATTCCCGATAAGGAAGCCGATAAGATTGATTCTGCAAATCTGGCCATTGATTACATCCATAACCATCCAATGGCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

50

Amino Acids

5.6

Weight (kDa)

4.12

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	2 - 40	1e-05	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
AoxI	GGCC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	15
BccI	CCATC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	126, 136
BseLI	CCNNNNNNNGG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	142
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	126, 136
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	126, 136
CviJI	RGCY	6 cut(s)	13, 21, 47, 89, 116, 146
CviKI_1	RGCY	6 cut(s)	13, 21, 47, 89, 116, 146
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	15
FaiI	YATR	2 cut(s)	132, 151
FokI	GGATG	2 cut(s)	113, 123
FriOI	GRGCYC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	116
HinfI	GANTC	2 cut(s)	73, 101
Hpy188III	TCNNGA	2 cut(s)	50, 77
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
LpnPI	CCDG	1 cut(s)	98
MaeI	CTAG	1 cut(s)	50
MboII	GAAGA	2 cut(s)	65, 68
MhlI	GDGCHC	1 cut(s)	15
MlsI	TGGCCA	1 cut(s)	116
MluNI	TGGCCA	1 cut(s)	116
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	73, 101
PflMI	CCANNNNNTGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	1 cut(s)	23
SgeI	CNNG	6 cut(s)	26, 34, 62, 80, 89, 125
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SspMI	CTAG	1 cut(s)	50
TaqI	TCGA	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	73, 101
TspDTI	ATGAA	1 cut(s)	138
Van91I	CCANNNNNTGG	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	49
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.