Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Reverse (-)

26409243 .. 26411835

Gene Structure 2593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1225300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTCTGAGAGCAGCCGTACTGCGGCACGTGCGAGTTCCGGTACAAACCCTAAACCCAGCCCTAACCCTAACCGGAGGCAAATGGGCCCCACCTTCTCTCCGGTGGATGTCATCGCACGGCGACGATCATCTGACCAAAAGCGAGGTCACCGACAGAGTCCTCTCCGTTGTCAAGAGCTTCCCCAAAGTCGATCCTTCTACGGTGACTCCTGATGTAAATTTTCAGAAGGATTTGGGCTTGGATAGCTTGGATAACGTGGAGATTGTTATTGCTCTAGAAGAAGAGTTCAAGCTAGAGATTCCAGACTTGGAAGCTGTTAGGATCGACTCCGCTAATCTGGCCATTGAGTACATCTATAACCATCCAATGGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

127

Amino Acids

13.97

Weight (kDa)

5.07

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	52 - 111	4.2e-10	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	370
AciI	CCGC	2 cut(s)	25, 333
AclWI	GGATC	2 cut(s)	188, 332
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	220
AcvI	CACGTG	1 cut(s)	31
AfaI	GTAC	3 cut(s)	21, 45, 353
AfiI	CCNNNNNNNGG	2 cut(s)	24, 370
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	4 cut(s)	180, 249, 295, 317
AluI	AGCT	4 cut(s)	180, 249, 295, 317
AlwI	GGATC	2 cut(s)	188, 332
AoxI	GGCC	2 cut(s)	87, 342
ApaI	GGGCCC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	220
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspS9I	GGNCC	2 cut(s)	87, 88
AsuHPI	GGTGA	2 cut(s)	142, 217
BaeGI	GKGCMC	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	91
BbrPI	CACGTG	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	372
BceAI	ACGGC	2 cut(s)	2, 136
BfaI	CTAG	2 cut(s)	278, 296
BisI	GCNGC	2 cut(s)	15, 26
BlsI	GCNGC	2 cut(s)	16, 27
BmgT120I	GGNCC	2 cut(s)	87, 88
BmiI	GGNNCC	2 cut(s)	89, 90
BsaAI	YACGTR	1 cut(s)	31
BsaWI	WCCGGW	3 cut(s)	40, 74, 102
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 193, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 370
BseGI	GGATG	2 cut(s)	114, 364
BseLI	CCNNNNNNNGG	2 cut(s)	24, 370
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	89, 344
BsiSI	CCGG	3 cut(s)	41, 75, 103
BslI	CCNNNNNNNGG	2 cut(s)	24, 370
BsnI	GGCC	2 cut(s)	89, 344
Bsp120I	GGGCCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	127, 193, 324
BspACI	CCGC	2 cut(s)	25, 333
BspANI	GGCC	2 cut(s)	89, 344
BspLI	GGNNCC	2 cut(s)	89, 90
BspPI	GGATC	2 cut(s)	188, 332
BssMI	GATC	3 cut(s)	127, 193, 324
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	8
BstEII	GGTNACC	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	114, 364
BstKTI	GATC	3 cut(s)	130, 196, 327
BstMBI	GATC	3 cut(s)	127, 193, 324
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 31, 246, 341
BstPI	GGTNACC	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	89, 344
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	114, 364
Cfr13I	GGNCC	2 cut(s)	87, 88
Csp6I	GTAC	3 cut(s)	20, 44, 352
CviQI	GTAC	3 cut(s)	20, 44, 352
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	3 cut(s)	129, 195, 326
DpnII	GATC	3 cut(s)	127, 193, 324
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	91
Eco72I	CACGTG	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	91
FaiI	YATR	1 cut(s)	360
Fnu4HI	GCNGC	2 cut(s)	15, 26
FokI	GGATG	2 cut(s)	121, 351
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	15, 26
FspBI	CTAG	2 cut(s)	278, 296
GluI	GCNGC	2 cut(s)	15, 26
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	89, 344
HapII	CCGG	3 cut(s)	41, 75, 103
HinfI	GANTC	4 cut(s)	159, 208, 301, 329
HpaII	CCGG	3 cut(s)	41, 75, 103
HphI	GGTGA	2 cut(s)	142, 217
Hpy188I	TCNGA	3 cut(s)	9, 135, 228
Hpy188III	TCNNGA	4 cut(s)	175, 212, 278, 305
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	105, 207, 223
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	2 cut(s)	30, 258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 31, 246, 341
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	2 cut(s)	30, 258
Kzo9I	GATC	3 cut(s)	127, 193, 324
LpnPI	CCDG	7 cut(s)	54, 72, 88, 116, 225, 318, 326
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	2 cut(s)	278, 296
MaeII	ACGT	2 cut(s)	30, 258
MaeIII	GTNAC	2 cut(s)	148, 205
MalI	GATC	3 cut(s)	129, 195, 326
MboI	GATC	3 cut(s)	127, 193, 324
MboII	GAAGA	2 cut(s)	293, 296
MhlI	GDGCHC	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	1 cut(s)	220
MluNI	TGGCCA	1 cut(s)	344
MlyI	GAGTC	3 cut(s)	168, 202, 323
MnlI	CCTC	3 cut(s)	71, 139, 173
Mox20I	TGGCCA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	344
MspI	CCGG	3 cut(s)	41, 75, 103
MwoI	GCNNNNNNNGC	4 cut(s)	11, 31, 246, 341
NdeII	GATC	3 cut(s)	127, 193, 324
NlaIV	GGNNCC	2 cut(s)	89, 90
NmuCI	GTSAC	2 cut(s)	148, 205
PfeI	GAWTC	1 cut(s)	301
PflFI	GACNNNGTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	16, 27
PleI	GAGTC	3 cut(s)	167, 202, 323
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
PpsI	GAGTC	3 cut(s)	167, 202, 323
Ppu21I	YACGTR	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	89, 90
PspOMI	GGGCCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	87, 88
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	3 cut(s)	21, 45, 353
RsaNI	GTAC	3 cut(s)	20, 44, 352
SatI	GCNGC	2 cut(s)	15, 26
Sau3AI	GATC	3 cut(s)	127, 193, 324
Sau96I	GGNCC	2 cut(s)	87, 88
SchI	GAGTC	3 cut(s)	168, 202, 323
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	8 cut(s)	33, 97, 150, 182, 251, 261, 297, 319
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	25, 333
SspMI	CTAG	2 cut(s)	278, 296
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	2 cut(s)	33, 261
TaqI	TCGA	2 cut(s)	192, 327
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	301
TseFI	GTSAC	2 cut(s)	148, 205
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	148, 205
TspGWI	ACGGA	1 cut(s)	157
Tth111I	GACNNNGTC	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	370
XapI	RAATTY	1 cut(s)	220
XbaI	TCTAGA	1 cut(s)	277
XspI	CTAG	2 cut(s)	278, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.