Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Forward (+)

6462340 .. 6464430

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCGCTGAGAGCAGCCGTACTGCGGCACGTTCGAGTTCCGGTAACCCTAAACCCGGCCCTAACCCTAACTGGAGGCAAATGGGCCCCACCCTCTCTCCGATGGATGTCATCGCACGGCGACGATCGATCTGACAGCTTCCAAATCTGGAAAAGCGAGGTCACCGACAGAGTCCTCTCCGTTGTCAAGAGCTTCCCGATAGTCGATCCTTCCACGGTGACTCCTGATGTACATTTTCAGAAGGATTTGGGCTTGGATAGCTTGGATAATGTGGAGATTGTGATTGCTCTAGAAGAAGAGTTCAAGCTAGAGATTCCAGATTTGGAAGCTGTTAGGATCGACTCCACTAATCTGGCAATTGAGTACGTCTATAACCATCCAATGGCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

131

Amino Acids

14.52

Weight (kDa)

4.93

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	57 - 110	5.3e-08	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	200, 344
AfaI	GTAC	3 cut(s)	21, 231, 365
AfiI	CCNNNNNNNGG	3 cut(s)	24, 55, 382
AgsI	TTSAA	1 cut(s)	304
AluBI	AGCT	5 cut(s)	138, 192, 261, 307, 329
AluI	AGCT	5 cut(s)	138, 192, 261, 307, 329
AlwI	GGATC	2 cut(s)	200, 344
AoxI	GGCC	2 cut(s)	57, 84
ApaI	GGGCCC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	14, 386
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	58, 84, 85
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	154, 229
BaeGI	GKGCMC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	26, 373
BccI	CCATC	2 cut(s)	96, 384
BceAI	ACGGC	2 cut(s)	2, 133
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	2 cut(s)	290, 308
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	3 cut(s)	15, 26, 387
BlsI	GCNGC	3 cut(s)	16, 27, 388
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	3 cut(s)	58, 84, 85
BmiI	GGNNCC	2 cut(s)	86, 87
BmrFI	CCNGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 205, 235
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 55, 382
Bse1I	ACTGG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	111, 376
BseLI	CCNNNNNNNGG	3 cut(s)	24, 55, 382
BseNI	ACTGG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	26, 373
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	59, 86
BshVI	ATCGAT	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	41, 56
BslI	CCNNNNNNNGG	3 cut(s)	24, 55, 382
BsnI	GGCC	2 cut(s)	59, 86
Bsp120I	GGGCCC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	124, 128, 205, 336
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	59, 86
BspDI	ATCGAT	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	86, 87
BspPI	GGATC	2 cut(s)	200, 344
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	4 cut(s)	124, 128, 205, 336
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	213
BstEII	GGTNACC	2 cut(s)	43, 160
BstF5I	GGATG	2 cut(s)	111, 376
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	127, 131, 208, 339
BstMBI	GATC	4 cut(s)	124, 128, 205, 336
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 258
BstPI	GGTNACC	2 cut(s)	43, 160
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	26, 373
BstXI	CCANNNNNNTGG	1 cut(s)	352
Bsu15I	ATCGAT	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	59, 86
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	111, 376
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	58, 84, 85
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	20, 230, 364
CviQI	GTAC	3 cut(s)	20, 230, 364
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	4 cut(s)	126, 130, 207, 338
DpnII	GATC	4 cut(s)	124, 128, 205, 336
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	88
Eco91I	GGTNACC	2 cut(s)	43, 160
EcoO109I	RGGNCCY	1 cut(s)	85
EcoO65I	GGTNACC	2 cut(s)	43, 160
EcoT38I	GRGCYC	1 cut(s)	88
FaiI	YATR	1 cut(s)	372
Fnu4HI	GCNGC	3 cut(s)	15, 26, 387
FokI	GGATG	2 cut(s)	118, 363
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	15, 26, 387
FspBI	CTAG	2 cut(s)	290, 308
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	15, 26, 387
GsuI	CTGGAG	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	59, 86
HapII	CCGG	2 cut(s)	41, 56
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	4 cut(s)	171, 220, 313, 341
HpaII	CCGG	2 cut(s)	41, 56
HphI	GGTGA	2 cut(s)	154, 229
Hpy188I	TCNGA	3 cut(s)	101, 133, 240
Hpy188III	TCNNGA	6 cut(s)	148, 187, 196, 224, 290, 317
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	219, 235
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	30, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 258
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	2 cut(s)	30, 366
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	124, 128, 205, 336
LpnPI	CCDG	7 cut(s)	54, 57, 69, 133, 237, 330, 338
Lsp1109I	GCAGC	2 cut(s)	26, 373
MaeI	CTAG	2 cut(s)	290, 308
MaeII	ACGT	2 cut(s)	30, 366
MaeIII	GTNAC	3 cut(s)	43, 160, 217
MalI	GATC	4 cut(s)	126, 130, 207, 338
MboI	GATC	4 cut(s)	124, 128, 205, 336
MboII	GAAGA	2 cut(s)	305, 308
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	357
MlyI	GAGTC	3 cut(s)	180, 214, 335
MnlI	CCTC	4 cut(s)	68, 103, 151, 185
MspI	CCGG	2 cut(s)	41, 56
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	11, 258
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	4 cut(s)	124, 128, 205, 336
NlaIV	GGNNCC	2 cut(s)	86, 87
NmuCI	GTSAC	2 cut(s)	160, 217
PfeI	GAWTC	1 cut(s)	313
PflFI	GACNNNGTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	16, 27, 388
Ple19I	CGATCG	1 cut(s)	127
PleI	GAGTC	3 cut(s)	179, 214, 335
PpsI	GAGTC	3 cut(s)	179, 214, 335
PspEI	GGTNACC	2 cut(s)	43, 160
PspN4I	GGNNCC	2 cut(s)	86, 87
PspOMI	GGGCCC	1 cut(s)	84
PspPI	GGNCC	3 cut(s)	58, 84, 85
PsyI	GACNNNGTC	1 cut(s)	170
PvuI	CGATCG	1 cut(s)	127
RsaI	GTAC	3 cut(s)	21, 231, 365
RsaNI	GTAC	3 cut(s)	20, 230, 364
SatI	GCNGC	3 cut(s)	15, 26, 387
Sau3AI	GATC	4 cut(s)	124, 128, 205, 336
Sau96I	GGNCC	3 cut(s)	58, 84, 85
SchI	GAGTC	3 cut(s)	180, 214, 335
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	8 cut(s)	33, 140, 162, 194, 263, 309, 331, 369
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	290, 308
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	33, 369
TaqI	TCGA	4 cut(s)	34, 127, 204, 339
TasI	AATT	1 cut(s)	357
TatI	WGTACW	1 cut(s)	229
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	160, 217
TseI	GCWGC	2 cut(s)	14, 386
Tsp45I	GTSAC	2 cut(s)	160, 217
TspGWI	ACGGA	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	382
XbaI	TCTAGA	1 cut(s)	289
XspI	CTAG	2 cut(s)	290, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.