Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Forward (+)

17342373 .. 17345145

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGCTGAGAGCAGCCCTACTGCGGCACGTGCGAATTCCGGCACAAACCCTAAACCCAGCCCTAACCCTAACCGGAGGAAAATGGGGCCCACCTTCTCTCCGGTGGATGTCATCGCACGACGATCATCTCACCAAATCCGAGGTCACCGAGAGAGTCCTCTCTGTTGTCAAGAGCTTCCCAAAAGTCGATCCTTCCACGGTGACTTCTGATGTACATTTCCAGAAGGATTTGGGCTTGGATAGCTTGGATAATGTGGAGATTGTGATGGCTCTGGAAGAAGAGTTCAAGCTAGAGATTCCAGACAAGGAAGCCGATAAGATTGACTCTACTAATCTGGCCATTGAGTACATCTACAACCATCCAATGGCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

126

Amino Acids

13.95

Weight (kDa)

5.26

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	367, 371
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	36
AcvI	CACGTG	1 cut(s)	31
AfaI	GTAC	2 cut(s)	216, 350
AfiI	CCNNNNNNNGG	3 cut(s)	24, 367, 371
AgsI	TTSAA	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	269, 301
AluBI	AGCT	3 cut(s)	177, 246, 292
AluI	AGCT	3 cut(s)	177, 246, 292
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	88, 339
ApaI	GGGCCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	36
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	88, 89
AsuHPI	GGTGA	3 cut(s)	124, 139, 214
BaeGI	GKGCMC	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	92
BbrPI	CACGTG	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	262, 369
BfaI	CTAG	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	15, 26
BlsI	GCNGC	2 cut(s)	16, 27
BmgT120I	GGNCC	2 cut(s)	88, 89
BmiI	GGNNCC	2 cut(s)	89, 90
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	141, 198
BsaWI	WCCGGW	2 cut(s)	74, 102
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 367, 371
BseDI	CCNNGG	2 cut(s)	141, 198
BseGI	GGATG	2 cut(s)	114, 361
BseLI	CCNNNNNNNGG	3 cut(s)	24, 367, 371
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	2 cut(s)	58, 371
BshFI	GGCC	2 cut(s)	90, 341
BsiSI	CCGG	3 cut(s)	41, 75, 103
BslI	CCNNNNNNNGG	3 cut(s)	24, 367, 371
BsnI	GGCC	2 cut(s)	90, 341
Bsp120I	GGGCCC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	124, 190
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	90, 341
BspLI	GGNNCC	2 cut(s)	89, 90
BspPI	GGATC	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	141, 198
BssMI	GATC	2 cut(s)	124, 190
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	198
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	114, 361
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	127, 193
BstMBI	GATC	2 cut(s)	124, 190
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 31, 243
BstPI	GGTNACC	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	90, 341
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	114, 361
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	88, 89
Csp6I	GTAC	2 cut(s)	215, 349
CviQI	GTAC	2 cut(s)	215, 349
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	2 cut(s)	126, 192
DpnII	GATC	2 cut(s)	124, 190
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	92
Eco72I	CACGTG	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	15, 26
FokI	GGATG	2 cut(s)	121, 348
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	15, 26
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	15, 26
GsaI	CCCAGC	2 cut(s)	62, 375
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	90, 341
HapII	CCGG	3 cut(s)	41, 75, 103
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	156, 298, 326
HpaII	CCGG	3 cut(s)	41, 75, 103
HphI	GGTGA	3 cut(s)	124, 139, 214
Hpy188I	TCNGA	2 cut(s)	142, 211
Hpy188III	TCNNGA	4 cut(s)	172, 223, 275, 302
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	105, 204, 220
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 31, 243
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	30
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	124, 190
LpnPI	CCDG	9 cut(s)	54, 72, 88, 116, 236, 260, 315, 323, 357
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	145, 202
MalI	GATC	2 cut(s)	126, 192
MboI	GATC	2 cut(s)	124, 190
MboII	GAAGA	2 cut(s)	290, 293
MhlI	GDGCHC	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	1 cut(s)	36
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	165, 320
MnlI	CCTC	3 cut(s)	71, 136, 170
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	3 cut(s)	41, 75, 103
MwoI	GCNNNNNNNGC	3 cut(s)	11, 31, 243
NdeII	GATC	2 cut(s)	124, 190
NlaIV	GGNNCC	2 cut(s)	89, 90
NmuCI	GTSAC	2 cut(s)	145, 202
PfeI	GAWTC	1 cut(s)	298
PflMI	CCANNNNNTGG	2 cut(s)	367, 371
PkrI	GCNGC	2 cut(s)	16, 27
PleI	GAGTC	2 cut(s)	164, 320
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
PpsI	GAGTC	2 cut(s)	164, 320
Ppu21I	YACGTR	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	145
PspFI	CCCAGC	2 cut(s)	58, 371
PspN4I	GGNNCC	2 cut(s)	89, 90
PspOMI	GGGCCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	88, 89
RsaI	GTAC	2 cut(s)	216, 350
RsaNI	GTAC	2 cut(s)	215, 349
SatI	GCNGC	2 cut(s)	15, 26
Sau3AI	GATC	2 cut(s)	124, 190
Sau96I	GGNCC	2 cut(s)	88, 89
SchI	GAGTC	2 cut(s)	165, 320
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	6 cut(s)	33, 97, 147, 179, 248, 294
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	36
TatI	WGTACW	2 cut(s)	214, 348
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	298
TseFI	GTSAC	2 cut(s)	145, 202
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	145, 202
Van91I	CCANNNNNTGG	2 cut(s)	367, 371
XapI	RAATTY	1 cut(s)	36
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.