Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Reverse (-)

30276254 .. 30279610

Gene Structure 3357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028930

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGATTCTAACAATTTGGTTCCTAACATAACCGGACCCAAATGGGGCCCACCTTCTCTCCGGTGGATGTCTTCGCACGACGATCATCTCACCAAAAACGAGGTCAACGACAGAGTCAATCCTTCCATGGTGACTCCTGATGTACATTTCCAAAAAAATTTGGGCTTAGATAGCTTGGATAATGTGGAGATTTTAATGGCTCTAGAAGAAAAGTTCAAGCTTGAGATTCTTGACAAGGAAGCCTATAAGATTGATTCTGCAAATCTGGCCATTGAGTACATCTATAACCATCCAATGGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

102

Amino Acids

11.52

Weight (kDa)

4.85

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	39 - 88	1.4e-06	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	157
AfaI	GTAC	2 cut(s)	144, 278
AfiI	CCNNNNNNNGG	2 cut(s)	44, 295
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	2 cut(s)	174, 220
AluI	AGCT	2 cut(s)	174, 220
AoxI	GGCC	2 cut(s)	46, 267
ApaI	GGGCCC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspS9I	GGNCC	3 cut(s)	35, 46, 47
AsuHPI	GGTGA	2 cut(s)	82, 142
AvaII	GGWCC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	63
BccI	CCATC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	35, 46, 47
BmiI	GGNNCC	4 cut(s)	21, 37, 47, 48
BpiI	GAAGAC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	2 cut(s)	32, 60
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 295
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	2 cut(s)	72, 289
BseLI	CCNNNNNNNGG	2 cut(s)	44, 295
BseSI	GKGCMC	1 cut(s)	50
BshFI	GGCC	2 cut(s)	48, 269
BsiSI	CCGG	2 cut(s)	33, 61
BslI	CCNNNNNNNGG	2 cut(s)	44, 295
BsnI	GGCC	2 cut(s)	48, 269
Bsp120I	GGGCCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	82
Bsp19I	CCATGG	1 cut(s)	126
BspANI	GGCC	2 cut(s)	48, 269
BspLI	GGNNCC	4 cut(s)	21, 37, 47, 48
BsrGI	TGTACA	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	166
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	72, 289
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 266
BstSLI	GKGCMC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	48, 269
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	72, 289
Cfr13I	GGNCC	3 cut(s)	35, 46, 47
Csp6I	GTAC	2 cut(s)	143, 277
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	8 cut(s)	48, 165, 174, 200, 220, 242, 269, 299
CviKI_1	RGCY	8 cut(s)	48, 165, 174, 200, 220, 242, 269, 299
CviQI	GTAC	2 cut(s)	143, 277
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	29, 128, 246, 285
FatI	CATG	1 cut(s)	126
FokI	GGATG	2 cut(s)	79, 276
FriOI	GRGCYC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	48, 269
HapII	CCGG	2 cut(s)	33, 61
Hin1II	CATG	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	5 cut(s)	5, 114, 133, 226, 254
HpaII	CCGG	2 cut(s)	33, 61
HphI	GGTGA	2 cut(s)	82, 142
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	3 cut(s)	137, 203, 230
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	63, 132
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 266
HpyF3I	CTNAG	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	46, 74, 150, 251
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	2 cut(s)	63, 218
MhlI	GDGCHC	1 cut(s)	50
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	2 cut(s)	13, 157
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	123, 127
MnlI	CCTC	1 cut(s)	94
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	2 cut(s)	33, 61
MwoI	GCNNNNNNNGC	2 cut(s)	171, 266
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	4 cut(s)	21, 37, 47, 48
NmuCI	GTSAC	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	3 cut(s)	5, 226, 254
PflFI	GACNNNGTC	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	295
PleI	GAGTC	2 cut(s)	122, 127
PpsI	GAGTC	2 cut(s)	122, 127
PspN4I	GGNNCC	4 cut(s)	21, 37, 47, 48
PspOMI	GGGCCC	1 cut(s)	46
PspPI	GGNCC	3 cut(s)	35, 46, 47
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	144, 278
RsaNI	GTAC	2 cut(s)	143, 277
SaqAI	TTAA	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	3 cut(s)	35, 46, 47
SchI	GAGTC	2 cut(s)	123, 127
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	4 cut(s)	55, 105, 176, 222
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	13, 157
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	126
TasI	AATT	2 cut(s)	13, 157
TatI	WGTACW	2 cut(s)	142, 276
TfiI	GAWTC	3 cut(s)	5, 226, 254
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
Tth111I	GACNNNGTC	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	157
XbaI	TCTAGA	1 cut(s)	202
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.